Wall clock time and date at job start Fri Apr 10 2020 20:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86803 * 120.00014 * 2 1 4 4 H 1.48499 * 109.47142 * 269.99980 * 3 2 1 5 5 H 1.48503 * 109.47050 * 29.99873 * 3 2 1 6 6 H 1.48498 * 109.47142 * 149.99936 * 3 2 1 7 7 C 1.38948 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00409 * 170.31453 * 7 2 1 9 9 N 1.37103 * 120.00001 * 350.31471 * 7 2 1 10 10 C 1.46496 * 119.99968 * 316.54033 * 9 7 2 11 11 C 1.53002 * 109.47300 * 264.37441 * 10 9 7 12 12 C 1.50690 * 109.47532 * 179.97438 * 11 10 9 13 13 O 1.20829 * 120.00063 * 359.97438 * 12 11 10 14 14 O 1.34229 * 120.00557 * 180.02562 * 12 11 10 15 15 C 1.34780 * 119.99893 * 136.53839 * 9 7 2 16 16 O 1.21293 * 119.99660 * 186.26352 * 15 9 7 17 17 C 1.50698 * 119.99948 * 6.25758 * 15 9 7 18 18 C 1.52950 * 109.40750 * 152.82363 * 17 15 9 19 19 C 1.53185 * 109.44592 * 183.09436 * 18 17 15 20 20 C 1.53143 * 108.88335 * 303.42880 * 19 18 17 21 21 C 1.52810 * 117.74971 * 199.62419 * 20 19 18 22 22 C 1.52841 * 117.67864 * 268.50465 * 20 19 18 23 23 C 1.53152 * 115.00830 * 53.94019 * 20 19 18 24 24 C 1.52940 * 109.41549 * 273.17899 * 17 15 9 25 25 H 0.97001 * 120.00201 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47198 * 24.37411 * 10 9 7 27 27 H 1.09002 * 109.47234 * 144.37442 * 10 9 7 28 28 H 1.08996 * 109.46900 * 300.00275 * 11 10 9 29 29 H 1.09002 * 109.46976 * 59.99844 * 11 10 9 30 30 H 0.96697 * 117.00391 * 180.02562 * 14 12 11 31 31 H 1.09004 * 109.35358 * 33.00834 * 17 15 9 32 32 H 1.09000 * 109.47705 * 63.10614 * 18 17 15 33 33 H 1.09003 * 109.47910 * 303.08445 * 18 17 15 34 34 H 1.08997 * 109.57085 * 183.60643 * 19 18 17 35 35 H 1.09006 * 109.56496 * 63.25108 * 19 18 17 36 36 H 1.08996 * 117.50083 * 0.14799 * 21 20 19 37 37 H 1.09005 * 117.50268 * 215.10539 * 21 20 19 38 38 H 1.09001 * 117.50261 * 144.77748 * 22 20 19 39 39 H 1.08996 * 117.52835 * 359.71766 * 22 20 19 40 40 H 1.09005 * 109.56858 * 65.88727 * 23 20 19 41 41 H 1.09000 * 109.57166 * 186.24549 * 23 20 19 42 42 H 1.08993 * 109.47580 * 296.90652 * 24 17 15 43 43 H 1.09004 * 109.46720 * 56.92047 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0773 -1.2101 -0.1568 9 7 1.3380 -2.3821 0.2008 10 6 0.3149 -2.4744 1.2453 11 6 0.9367 -3.0509 2.5188 12 6 -0.1155 -3.1452 3.5934 13 8 -1.2466 -2.7875 3.3644 14 8 0.2040 -3.6256 4.8054 15 6 1.6198 -3.4561 -0.5633 16 8 0.9507 -4.4629 -0.4645 17 6 2.7661 -3.4058 -1.5403 18 6 3.3064 -4.8192 -1.7630 19 6 4.5201 -4.7602 -2.6957 20 6 4.1084 -4.0756 -4.0022 21 6 4.9862 -4.3035 -5.2322 22 6 3.6083 -4.9630 -5.1417 23 6 3.4587 -2.6988 -3.8351 24 6 2.2781 -2.8220 -2.8669 25 1 -0.4850 0.8400 -0.0004 26 1 -0.0831 -1.4810 1.4528 27 1 -0.4913 -3.1256 0.9076 28 1 1.3348 -4.0441 2.3113 29 1 1.7430 -2.3996 2.8565 30 1 -0.5046 -3.6673 5.4620 31 1 3.5578 -2.7749 -1.1361 32 1 2.5308 -5.4377 -2.2148 33 1 3.6035 -5.2497 -0.8067 34 1 4.8677 -5.7714 -2.9071 35 1 5.3183 -4.1898 -2.2204 36 1 5.8598 -4.9447 -5.1152 37 1 5.1019 -3.4731 -5.9288 38 1 2.8176 -4.5665 -5.7786 39 1 3.5754 -6.0382 -4.9657 40 1 4.1892 -1.9969 -3.4327 41 1 3.1024 -2.3434 -4.8019 42 1 1.5225 -3.4793 -3.2971 43 1 1.8462 -1.8364 -2.6932 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:18:20 Heat of formation + Delta-G solvation = -124.309462 kcal Electronic energy + Delta-G solvation = -24802.111244 eV Core-core repulsion = 21233.108769 eV Total energy + Delta-G solvation = -3569.002475 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.85630 -39.47788 -38.10578 -35.80663 -35.00375 -34.05807 -31.93675 -30.70449 -30.34178 -27.49763 -25.18208 -23.95887 -22.40992 -22.34761 -21.33172 -20.21308 -19.08192 -18.30531 -17.73216 -16.82622 -16.12100 -15.84798 -15.42886 -15.14891 -14.90680 -14.49609 -14.18776 -13.72120 -13.28667 -13.11891 -13.03094 -12.62307 -12.51099 -12.24929 -11.86598 -11.78356 -11.56161 -11.43227 -11.25374 -11.20943 -11.13302 -10.98087 -10.83042 -10.61110 -10.42075 -10.15608 -10.11325 -9.96599 -9.73741 -9.61168 -9.38251 -9.10476 -8.36016 -7.49674 -6.35144 -4.18973 2.68465 3.09818 3.19127 3.20840 3.42901 3.86692 3.94282 4.12321 4.75406 4.82382 4.95017 4.95936 5.09037 5.23130 5.55993 5.60843 5.68844 5.72771 5.74854 5.80200 5.86600 5.92554 5.97691 6.00654 6.06582 6.19552 6.24223 6.30553 6.34938 6.39717 6.43732 6.56646 6.65707 6.69468 6.83981 6.93437 6.99624 7.00914 7.33752 7.49019 7.96952 8.30731 8.34618 9.05255 9.47366 9.90516 10.66498 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.005283 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.636834 B = 5298.446178 C = 6747.908973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.341 4.341 8 H 0.089 0.911 9 N -0.442 5.442 10 C 0.129 3.871 11 C -0.126 4.126 12 C 0.482 3.518 13 O -0.513 6.513 14 O -0.525 6.525 15 C 0.484 3.516 16 O -0.601 6.601 17 C -0.084 4.084 18 C -0.097 4.097 19 C -0.079 4.079 20 C -0.114 4.114 21 C -0.183 4.183 22 C -0.175 4.175 23 C -0.078 4.078 24 C -0.097 4.097 25 H 0.271 0.729 26 H 0.116 0.884 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.401 0.599 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.953 -4.348 -2.030 9.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.161 4.161 3 Si 0.739 3.261 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.469 4.469 8 H 0.107 0.893 9 N -0.161 5.161 10 C 0.004 3.996 11 C -0.165 4.165 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.337 6.337 15 C 0.274 3.726 16 O -0.486 6.486 17 C -0.105 4.105 18 C -0.135 4.135 19 C -0.116 4.116 20 C -0.114 4.114 21 C -0.220 4.220 22 C -0.212 4.212 23 C -0.115 4.115 24 C -0.135 4.135 25 H 0.081 0.919 26 H 0.133 0.867 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.258 0.742 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.439 -4.551 -2.329 9.027 hybrid contribution -0.080 0.932 0.486 1.054 sum 7.360 -3.619 -1.843 8.406 Atomic orbital electron populations 1.69826 1.06060 1.27772 1.46136 1.25478 0.95247 0.99742 0.95604 0.86155 0.79545 0.81715 0.78637 1.20114 1.20814 1.19333 1.19351 0.92291 0.82963 1.52319 0.89343 1.43335 1.35143 1.09808 1.27796 1.21148 0.90535 1.03822 0.84054 1.21909 0.96904 1.04470 0.93187 1.23803 0.89546 0.72343 0.81835 1.90707 1.23063 1.45256 1.81039 1.84591 1.46761 1.78337 1.24022 1.20615 0.86331 0.84078 0.81621 1.90524 1.53344 1.33907 1.70819 1.20941 0.97259 0.96794 0.95502 1.21346 0.96856 0.96665 0.98636 1.21153 0.97928 0.98964 0.93563 1.21546 1.02300 0.97382 0.90172 1.22970 0.94273 1.03276 1.01438 1.22973 0.97134 0.98710 1.02429 1.21153 0.97462 0.93595 0.99292 1.21297 0.96837 1.02226 0.93113 0.91898 0.86673 0.91965 0.88665 0.87899 0.74179 0.89592 0.91375 0.92371 0.92344 0.91704 0.89301 0.89209 0.89122 0.89193 0.91438 0.92270 0.92465 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.54 11.28 55.50 0.63 -21.92 16 2 C 0.05 1.11 5.14 -17.47 -0.09 1.02 16 3 Si 0.91 18.80 29.56 -169.99 -5.03 13.78 16 4 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.34 -8.11 8.03 -14.93 -0.12 -8.23 16 8 H 0.09 1.99 6.55 -52.48 -0.34 1.64 16 9 N -0.44 -10.63 2.51 -114.81 -0.29 -10.92 16 10 C 0.13 3.07 4.19 -4.04 -0.02 3.05 16 11 C -0.13 -2.47 6.09 -27.89 -0.17 -2.64 16 12 C 0.48 8.92 8.33 36.00 0.30 9.22 16 13 O -0.51 -11.09 16.74 -18.75 -0.31 -11.40 16 14 O -0.53 -7.54 13.42 -39.26 -0.53 -8.07 16 15 C 0.48 11.29 6.66 -10.98 -0.07 11.22 16 16 O -0.60 -15.49 15.83 5.55 0.09 -15.40 16 17 C -0.08 -1.59 1.76 -91.83 -0.16 -1.76 16 18 C -0.10 -1.62 4.71 -26.66 -0.13 -1.75 16 19 C -0.08 -1.07 5.67 -26.56 -0.15 -1.22 16 20 C -0.11 -1.52 1.97 -154.54 -0.31 -1.83 16 21 C -0.18 -2.06 9.99 -26.81 -0.27 -2.33 16 22 C -0.18 -2.15 9.93 -26.80 -0.27 -2.42 16 23 C -0.08 -1.14 5.67 -26.56 -0.15 -1.29 16 24 C -0.10 -1.75 5.14 -26.67 -0.14 -1.89 16 25 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 26 H 0.12 3.00 5.58 -51.93 -0.29 2.71 16 27 H 0.06 1.62 7.47 -51.93 -0.39 1.23 16 28 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 29 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 30 H 0.40 3.81 9.10 45.56 0.41 4.22 16 31 H 0.09 1.61 6.52 -51.93 -0.34 1.27 16 32 H 0.07 1.23 7.96 -51.93 -0.41 0.82 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.66 7.63 -51.93 -0.40 1.26 16 LS Contribution 350.67 15.07 5.28 5.28 Total: -1.00 -29.74 350.67 -7.85 -37.59 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -5.96 Total: 11.88 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.73 Total: -0.82 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.34 Total: -32.84 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.75 Total: -34.87 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.74 -7.85 -37.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.723 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds