Wall clock time and date at job start Fri Apr 10 2020 20:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86803 * 120.00014 * 2 1 4 4 H 1.48499 * 109.47142 * 269.99980 * 3 2 1 5 5 H 1.48503 * 109.47050 * 29.99873 * 3 2 1 6 6 H 1.48498 * 109.47142 * 149.99936 * 3 2 1 7 7 C 1.38948 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00409 * 170.31453 * 7 2 1 9 9 N 1.37103 * 120.00001 * 350.31471 * 7 2 1 10 10 C 1.46496 * 119.99968 * 316.54033 * 9 7 2 11 11 C 1.53002 * 109.47300 * 264.37441 * 10 9 7 12 12 C 1.50690 * 109.47532 * 179.97438 * 11 10 9 13 13 O 1.20829 * 120.00063 * 359.97438 * 12 11 10 14 14 O 1.34229 * 120.00557 * 180.02562 * 12 11 10 15 15 C 1.34780 * 119.99893 * 136.53839 * 9 7 2 16 16 O 1.21293 * 119.99660 * 186.26352 * 15 9 7 17 17 C 1.50698 * 119.99948 * 6.25758 * 15 9 7 18 18 C 1.52950 * 109.40750 * 152.82363 * 17 15 9 19 19 C 1.53185 * 109.44592 * 183.09436 * 18 17 15 20 20 C 1.53143 * 108.88335 * 303.42880 * 19 18 17 21 21 C 1.52810 * 117.74971 * 199.62419 * 20 19 18 22 22 C 1.52841 * 117.67864 * 268.50465 * 20 19 18 23 23 C 1.53152 * 115.00830 * 53.94019 * 20 19 18 24 24 C 1.52940 * 109.41549 * 273.17899 * 17 15 9 25 25 H 0.97001 * 120.00201 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47198 * 24.37411 * 10 9 7 27 27 H 1.09002 * 109.47234 * 144.37442 * 10 9 7 28 28 H 1.08996 * 109.46900 * 300.00275 * 11 10 9 29 29 H 1.09002 * 109.46976 * 59.99844 * 11 10 9 30 30 H 0.96697 * 117.00391 * 180.02562 * 14 12 11 31 31 H 1.09004 * 109.35358 * 33.00834 * 17 15 9 32 32 H 1.09000 * 109.47705 * 63.10614 * 18 17 15 33 33 H 1.09003 * 109.47910 * 303.08445 * 18 17 15 34 34 H 1.08997 * 109.57085 * 183.60643 * 19 18 17 35 35 H 1.09006 * 109.56496 * 63.25108 * 19 18 17 36 36 H 1.08996 * 117.50083 * 0.14799 * 21 20 19 37 37 H 1.09005 * 117.50268 * 215.10539 * 21 20 19 38 38 H 1.09001 * 117.50261 * 144.77748 * 22 20 19 39 39 H 1.08996 * 117.52835 * 359.71766 * 22 20 19 40 40 H 1.09005 * 109.56858 * 65.88727 * 23 20 19 41 41 H 1.09000 * 109.57166 * 186.24549 * 23 20 19 42 42 H 1.08993 * 109.47580 * 296.90652 * 24 17 15 43 43 H 1.09004 * 109.46720 * 56.92047 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0773 -1.2101 -0.1568 9 7 1.3380 -2.3821 0.2008 10 6 0.3149 -2.4744 1.2453 11 6 0.9367 -3.0509 2.5188 12 6 -0.1155 -3.1452 3.5934 13 8 -1.2466 -2.7875 3.3644 14 8 0.2040 -3.6256 4.8054 15 6 1.6198 -3.4561 -0.5633 16 8 0.9507 -4.4629 -0.4645 17 6 2.7661 -3.4058 -1.5403 18 6 3.3064 -4.8192 -1.7630 19 6 4.5201 -4.7602 -2.6957 20 6 4.1084 -4.0756 -4.0022 21 6 4.9862 -4.3035 -5.2322 22 6 3.6083 -4.9630 -5.1417 23 6 3.4587 -2.6988 -3.8351 24 6 2.2781 -2.8220 -2.8669 25 1 -0.4850 0.8400 -0.0004 26 1 -0.0831 -1.4810 1.4528 27 1 -0.4913 -3.1256 0.9076 28 1 1.3348 -4.0441 2.3113 29 1 1.7430 -2.3996 2.8565 30 1 -0.5046 -3.6673 5.4620 31 1 3.5578 -2.7749 -1.1361 32 1 2.5308 -5.4377 -2.2148 33 1 3.6035 -5.2497 -0.8067 34 1 4.8677 -5.7714 -2.9071 35 1 5.3183 -4.1898 -2.2204 36 1 5.8598 -4.9447 -5.1152 37 1 5.1019 -3.4731 -5.9288 38 1 2.8176 -4.5665 -5.7786 39 1 3.5754 -6.0382 -4.9657 40 1 4.1892 -1.9969 -3.4327 41 1 3.1024 -2.3434 -4.8019 42 1 1.5225 -3.4793 -3.2971 43 1 1.8462 -1.8364 -2.6932 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:18:20 Heat of formation + Delta-G solvation = -141.246217 kcal Electronic energy + Delta-G solvation = -24802.845677 eV Core-core repulsion = 21233.108769 eV Total energy + Delta-G solvation = -3569.736908 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41057 -40.93866 -39.53421 -37.25521 -36.79183 -35.46398 -33.79005 -32.33165 -31.72872 -28.81934 -27.05056 -25.63134 -23.67321 -23.38349 -22.67704 -21.73277 -20.89382 -19.53891 -19.19522 -18.51835 -17.78430 -17.54751 -16.98595 -16.34964 -16.21984 -16.12304 -15.79208 -15.35404 -14.81541 -14.56535 -14.31052 -14.22428 -14.01726 -13.64675 -13.40012 -13.11812 -13.06813 -12.89206 -12.77465 -12.58046 -12.57369 -12.54450 -12.25785 -12.08556 -11.92060 -11.88155 -11.67618 -11.45808 -11.02182 -10.93635 -10.83608 -10.45938 -10.13772 -9.41945 -8.22597 -6.12384 1.17653 1.46350 1.50733 1.61318 1.93936 2.10353 2.39831 2.93248 3.10045 3.12517 3.76508 3.85558 3.99236 4.04345 4.08896 4.14485 4.30625 4.34514 4.41394 4.49168 4.51944 4.63681 4.66539 4.74794 4.88121 4.95178 5.00654 5.02338 5.09849 5.12618 5.21142 5.24364 5.30984 5.37916 5.38387 5.40370 5.52586 5.58399 5.60333 5.61554 6.10152 6.42744 6.99206 7.16050 7.59835 8.03170 8.79988 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.005283 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.636834 B = 5298.446178 C = 6747.908973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.980 3.020 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.252 1.252 7 C -0.344 4.344 8 H 0.105 0.895 9 N -0.452 5.452 10 C 0.133 3.867 11 C -0.116 4.116 12 C 0.495 3.505 13 O -0.551 6.551 14 O -0.506 6.506 15 C 0.471 3.529 16 O -0.634 6.634 17 C -0.076 4.076 18 C -0.091 4.091 19 C -0.070 4.070 20 C -0.134 4.134 21 C -0.157 4.157 22 C -0.183 4.183 23 C -0.069 4.069 24 C -0.090 4.090 25 H 0.268 0.732 26 H 0.093 0.907 27 H 0.026 0.974 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.427 0.573 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.086 -4.270 -2.321 12.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.201 4.201 3 Si 0.804 3.196 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.175 1.175 7 C -0.471 4.471 8 H 0.123 0.877 9 N -0.170 5.170 10 C 0.009 3.991 11 C -0.155 4.155 12 C 0.338 3.662 13 O -0.441 6.441 14 O -0.320 6.320 15 C 0.262 3.738 16 O -0.522 6.522 17 C -0.097 4.097 18 C -0.129 4.129 19 C -0.107 4.107 20 C -0.134 4.134 21 C -0.194 4.194 22 C -0.220 4.220 23 C -0.107 4.107 24 C -0.128 4.128 25 H 0.078 0.922 26 H 0.111 0.889 27 H 0.044 0.956 28 H 0.118 0.882 29 H 0.138 0.862 30 H 0.288 0.712 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.601 -4.490 -2.589 11.800 hybrid contribution -1.141 0.842 0.631 1.552 sum 9.460 -3.648 -1.958 10.326 Atomic orbital electron populations 1.69988 1.07920 1.28374 1.47806 1.26328 0.95748 1.03026 0.95013 0.85118 0.78659 0.77120 0.78709 1.19648 1.21618 1.17515 1.19726 0.92968 0.82807 1.51630 0.87718 1.43586 1.34897 1.10378 1.28140 1.20888 0.90281 1.01881 0.86062 1.21643 0.97276 1.04664 0.91930 1.23390 0.88342 0.71738 0.82720 1.90708 1.24360 1.47116 1.81947 1.84501 1.47627 1.76979 1.22888 1.21465 0.87189 0.83343 0.81831 1.90489 1.54847 1.35021 1.71803 1.20957 0.95524 0.98725 0.94519 1.21287 0.97775 0.94438 0.99379 1.21101 0.96317 1.00443 0.92846 1.21494 1.04264 0.96707 0.90935 1.23038 0.94014 1.03164 0.99168 1.23048 0.98198 0.98906 1.01839 1.21069 0.95950 0.95081 0.98560 1.21193 0.98086 0.99838 0.93675 0.92211 0.88938 0.95562 0.88199 0.86225 0.71173 0.88832 0.93393 0.92599 0.90412 0.90494 0.87594 0.88169 0.89388 0.88750 0.90657 0.91228 0.94245 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.94 11.28 21.66 0.24 -48.69 16 2 C 0.00 0.05 5.14 84.93 0.44 0.49 16 3 Si 0.98 38.21 29.56 68.60 2.03 40.23 16 4 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.29 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.25 -9.05 7.11 99.48 0.71 -8.35 16 7 C -0.34 -16.42 8.03 84.04 0.67 -15.75 16 8 H 0.11 4.58 6.55 -2.91 -0.02 4.56 16 9 N -0.45 -22.38 2.51 -635.52 -1.59 -23.97 16 10 C 0.13 6.66 4.19 86.38 0.36 7.02 16 11 C -0.12 -4.61 6.09 29.85 0.18 -4.42 16 12 C 0.49 18.19 8.33 71.23 0.59 18.78 16 13 O -0.55 -24.32 16.74 21.96 0.37 -23.95 16 14 O -0.51 -13.49 13.42 -51.41 -0.69 -14.18 16 15 C 0.47 22.67 6.66 87.66 0.58 23.25 16 16 O -0.63 -34.15 15.83 -3.07 -0.05 -34.20 16 17 C -0.08 -2.91 1.76 -11.58 -0.02 -2.93 16 18 C -0.09 -2.98 4.71 30.64 0.14 -2.83 16 19 C -0.07 -1.71 5.67 30.70 0.17 -1.53 16 20 C -0.13 -3.23 1.97 -52.20 -0.10 -3.33 16 21 C -0.16 -2.94 9.99 30.54 0.31 -2.63 16 22 C -0.18 -4.05 9.93 30.55 0.30 -3.75 16 23 C -0.07 -1.91 5.67 30.70 0.17 -1.74 16 24 C -0.09 -3.29 5.14 30.63 0.16 -3.14 16 25 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 26 H 0.09 5.07 5.58 -2.38 -0.01 5.05 16 27 H 0.03 1.45 7.47 -2.39 -0.02 1.43 16 28 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 29 H 0.12 4.32 8.14 -2.39 -0.02 4.30 16 30 H 0.43 7.03 9.10 -74.06 -0.67 6.35 16 31 H 0.09 3.40 6.52 -2.38 -0.02 3.39 16 32 H 0.05 1.75 7.96 -2.39 -0.02 1.73 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 35 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.07 1.96 8.14 -2.38 -0.02 1.95 16 41 H 0.07 1.77 8.09 -2.39 -0.02 1.75 16 42 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.05 2.17 7.63 -2.39 -0.02 2.15 16 Total: -1.00 -67.17 350.67 4.62 -62.55 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.34 Total: 34.71 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 3.97 Total: 7.50 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.35 Total: -72.66 kcal Atomic # 8 Polarization: -71.96 SS G_CDS: -0.37 Total: -72.33 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.23 kcal Total: -67.17 4.62 -62.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.694 kcal (2) G-P(sol) polarization free energy of solvation -67.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds