Wall clock time and date at job start Fri Apr 10 2020 20:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99839 * 2 1 4 4 O 1.20822 * 120.00212 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99734 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47271 * 60.00938 * 5 3 2 7 7 C 1.52998 * 109.47470 * 299.99963 * 5 3 2 8 8 C 1.53000 * 109.47031 * 180.02562 * 7 5 3 9 9 C 1.52988 * 109.47386 * 60.00284 * 8 7 5 10 10 C 1.53005 * 109.47240 * 299.99651 * 9 8 7 11 11 C 1.53000 * 109.46646 * 59.99896 * 10 9 8 12 12 H 1.09003 * 109.46960 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47321 * 60.00392 * 11 10 9 14 14 O 1.21292 * 119.99539 * 246.66467 * 13 11 10 15 15 N 1.34772 * 119.99932 * 66.65869 * 13 11 10 16 16 C 1.37100 * 119.99634 * 185.06520 * 15 13 11 17 17 H 1.08001 * 120.00352 * 331.87910 * 16 15 13 18 18 C 1.38952 * 119.99821 * 151.88154 * 16 15 13 19 19 N 1.31418 * 120.00312 * 348.73883 * 18 16 15 20 20 Si 1.86806 * 120.00142 * 168.73511 * 18 16 15 21 21 H 1.48502 * 109.46835 * 59.99892 * 20 18 16 22 22 H 1.48500 * 109.46905 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47136 * 300.00213 * 20 18 16 24 24 C 1.46497 * 120.00162 * 5.06748 * 15 13 11 25 25 C 1.53000 * 117.49929 * 134.45145 * 24 15 13 26 26 C 1.52996 * 117.49894 * 65.78776 * 24 15 13 27 27 H 1.09004 * 109.47043 * 299.99635 * 1 2 3 28 28 H 1.08991 * 109.47324 * 59.99632 * 1 2 3 29 29 H 1.09005 * 109.46751 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47190 * 300.00551 * 7 5 3 31 31 H 1.09006 * 109.46442 * 60.00427 * 7 5 3 32 32 H 1.09007 * 109.46994 * 299.99945 * 8 7 5 33 33 H 1.09003 * 109.46960 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.47283 * 180.02562 * 9 8 7 35 35 H 1.08998 * 109.47294 * 60.00032 * 9 8 7 36 36 H 1.08998 * 109.47288 * 300.00385 * 10 9 8 37 37 H 1.08999 * 109.47190 * 179.97438 * 10 9 8 38 38 H 0.96994 * 120.00233 * 185.05572 * 19 18 16 39 39 H 1.09003 * 115.54766 * 280.11753 * 24 15 13 40 40 H 1.09000 * 117.49947 * 359.97438 * 25 24 15 41 41 H 1.08995 * 117.50217 * 145.02080 * 25 24 15 42 42 H 1.09003 * 117.50168 * 214.97650 * 26 24 15 43 43 H 1.09000 * 117.49864 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7811 -0.8909 7 6 4.1139 0.5811 1.2483 8 6 5.6418 0.6617 1.2479 9 6 6.0751 2.1290 1.2484 10 6 5.5275 2.8229 -0.0005 11 6 3.9996 2.7422 -0.0002 12 1 3.6095 3.2370 -0.8896 13 6 3.4608 3.4248 1.2307 14 8 2.9000 2.7752 2.0879 15 7 3.6022 4.7568 1.3790 16 6 3.2058 5.3628 2.5432 17 1 2.4097 4.9321 3.1323 18 6 3.8284 6.5311 2.9652 19 7 4.9330 6.9357 2.3792 20 14 3.0954 7.5269 4.3654 21 1 3.0361 6.6894 5.5903 22 1 3.9431 8.7189 4.6218 23 1 1.7246 7.9636 3.9976 24 6 4.1792 5.5573 0.2962 25 6 3.4720 6.8633 -0.0710 26 6 3.3867 5.6564 -1.0087 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.7245 1.0749 2.1385 31 1 3.8049 -0.4642 1.2480 32 1 6.0315 0.1680 0.3576 33 1 6.0319 0.1671 2.1374 34 1 7.1636 2.1864 1.2476 35 1 5.6854 2.6226 2.1386 36 1 5.9172 2.3293 -0.8908 37 1 5.8358 3.8684 0.0001 38 1 5.4075 7.7098 2.7204 39 1 5.2667 5.5363 0.2243 40 1 2.5771 7.1268 0.4927 41 1 4.0940 7.7015 -0.3850 42 1 3.9527 5.7011 -1.9392 43 1 2.4361 5.1256 -1.0617 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906400621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:18:11 Heat of formation + Delta-G solvation = -92.033143 kcal Electronic energy + Delta-G solvation = -26299.918408 eV Core-core repulsion = 22732.315539 eV Total energy + Delta-G solvation = -3567.602869 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.61417 -39.05859 -37.07056 -35.88635 -35.55594 -32.87512 -31.42751 -30.90201 -30.19006 -27.44650 -25.27236 -23.46322 -22.81584 -21.42364 -21.21198 -20.41663 -20.26074 -18.01413 -17.09484 -16.80338 -16.31122 -16.02096 -15.45664 -15.07427 -14.66519 -14.19157 -13.95885 -13.83516 -13.50455 -13.07614 -12.82902 -12.79387 -12.39985 -12.12300 -12.04310 -11.64916 -11.61274 -11.41497 -11.13261 -11.00064 -10.62787 -10.61559 -10.46863 -10.41917 -10.30293 -10.28729 -10.05360 -9.91230 -9.59534 -9.48252 -9.27569 -8.71579 -8.02238 -7.50213 -6.20641 -3.78138 2.78464 3.12762 3.24263 3.28668 3.33188 4.04288 4.19510 4.75801 4.81483 4.97293 5.09189 5.15793 5.30525 5.32225 5.38472 5.48504 5.54696 5.62541 5.70586 5.74103 5.80633 5.86732 5.88631 5.97539 6.00466 6.16046 6.23056 6.35325 6.37612 6.42869 6.52883 6.55915 6.69935 6.79917 6.81919 6.84382 7.01746 7.05606 7.25734 7.68523 8.27875 8.30576 8.62943 9.32099 9.55807 10.13885 10.86073 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.006236 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.405001 B = 4489.082502 C = 4805.095372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.470 3.530 4 O -0.489 6.489 5 C -0.051 4.051 6 H 0.098 0.902 7 C -0.129 4.129 8 C -0.110 4.110 9 C -0.123 4.123 10 C -0.108 4.108 11 C -0.092 4.092 12 H 0.090 0.910 13 C 0.489 3.511 14 O -0.579 6.579 15 N -0.421 5.421 16 C -0.307 4.307 17 H 0.092 0.908 18 C 0.041 3.959 19 N -0.874 5.874 20 Si 0.916 3.084 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.276 1.276 24 C 0.133 3.867 25 C -0.140 4.140 26 C -0.228 4.228 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.265 0.735 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 -9.223 -7.717 12.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.284 6.284 3 C 0.312 3.688 4 O -0.373 6.373 5 C -0.070 4.070 6 H 0.115 0.885 7 C -0.166 4.166 8 C -0.148 4.148 9 C -0.160 4.160 10 C -0.145 4.145 11 C -0.114 4.114 12 H 0.108 0.892 13 C 0.278 3.722 14 O -0.463 6.463 15 N -0.139 5.139 16 C -0.435 4.435 17 H 0.110 0.890 18 C -0.163 4.163 19 N -0.512 5.512 20 Si 0.743 3.257 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.201 1.201 24 C 0.028 3.972 25 C -0.177 4.177 26 C -0.266 4.266 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.395 -8.994 -7.291 11.585 hybrid contribution -0.519 0.835 0.566 1.134 sum -0.123 -8.159 -6.724 10.574 Atomic orbital electron populations 1.23132 0.77390 1.02782 1.02369 1.86468 1.22645 1.34323 1.84976 1.23656 0.91966 0.81047 0.72153 1.90669 1.66825 1.36091 1.43754 1.20786 0.86860 0.97950 1.01420 0.88453 1.21918 0.95583 0.99855 0.99276 1.21472 0.95413 0.96799 1.01085 1.21555 0.99700 0.95458 0.99311 1.21529 0.92784 1.02211 0.98008 1.21186 0.96841 0.93126 1.00199 0.89186 1.19518 0.83172 0.82111 0.87422 1.90362 1.46856 1.63489 1.45643 1.42887 1.54551 1.03726 1.12778 1.19427 1.17803 1.06592 0.99692 0.89045 1.25214 0.95222 0.97901 0.97919 1.69845 1.14960 1.26172 1.40271 0.86162 0.78894 0.79072 0.81541 1.20031 1.21049 1.20128 1.21066 0.94565 0.95831 0.85781 1.22680 1.02638 0.91611 1.00782 1.23578 1.02995 1.05252 0.94775 0.92002 0.92467 0.88781 0.86876 0.92073 0.92685 0.92062 0.92326 0.90766 0.92017 0.90146 0.92436 0.87767 0.89280 0.89876 0.89721 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.01 10.47 -39.26 -0.41 -6.43 16 3 C 0.47 8.94 6.34 36.00 0.23 9.17 16 4 O -0.49 -11.01 14.10 -25.30 -0.36 -11.36 16 5 C -0.05 -0.86 2.38 -91.77 -0.22 -1.08 16 6 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 7 C -0.13 -2.15 4.87 -26.73 -0.13 -2.28 16 8 C -0.11 -1.58 5.92 -26.74 -0.16 -1.74 16 9 C -0.12 -2.01 5.70 -26.73 -0.15 -2.17 16 10 C -0.11 -1.76 5.31 -26.73 -0.14 -1.90 16 11 C -0.09 -1.73 1.47 -91.77 -0.13 -1.87 16 12 H 0.09 1.68 6.15 -51.93 -0.32 1.36 16 13 C 0.49 11.74 4.23 -10.98 -0.05 11.70 16 14 O -0.58 -15.53 11.75 -13.77 -0.16 -15.69 16 15 N -0.42 -10.69 2.91 -107.73 -0.31 -11.01 16 16 C -0.31 -8.60 8.76 -14.93 -0.13 -8.73 16 17 H 0.09 2.74 7.47 -52.49 -0.39 2.35 16 18 C 0.04 1.09 4.66 -17.46 -0.08 1.01 16 19 N -0.87 -22.83 10.85 55.50 0.60 -22.23 16 20 Si 0.92 21.13 29.57 -169.99 -5.03 16.10 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 C 0.13 2.96 2.59 -67.93 -0.18 2.78 16 25 C -0.14 -2.97 8.56 -26.69 -0.23 -3.20 16 26 C -0.23 -4.36 8.68 -26.69 -0.23 -4.59 16 27 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 28 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.11 2.36 5.27 -51.93 -0.27 2.08 16 31 H 0.06 0.91 8.11 -51.93 -0.42 0.48 16 32 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.52 7.22 -51.93 -0.37 1.14 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.41 5.38 -51.93 -0.28 1.13 16 38 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 39 H 0.11 2.33 6.45 -51.93 -0.34 1.99 16 40 H 0.09 2.08 7.84 -51.93 -0.41 1.67 16 41 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.09 1.78 7.98 -51.93 -0.41 1.37 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -31.48 332.58 -7.77 -39.25 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.58 Total: 7.68 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -0.54 Total: -1.33 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.29 Total: -33.24 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.93 Total: -33.48 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.48 -7.77 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906400621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.780 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds