Wall clock time and date at job start Fri Apr 10 2020 20:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99905 * 2 1 4 4 H 1.48497 * 109.47251 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47194 * 299.99703 * 3 2 1 6 6 H 1.48504 * 109.47306 * 60.00035 * 3 2 1 7 7 C 1.37878 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99798 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00002 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.52576 * 299.92257 * 9 7 2 11 11 C 1.53046 * 109.49577 * 60.00123 * 9 7 2 12 12 C 1.53039 * 109.52798 * 181.31010 * 11 9 7 13 13 C 1.53200 * 109.31160 * 298.64112 * 12 11 9 14 14 N 1.46931 * 108.77279 * 54.63574 * 13 12 11 15 15 C 1.34771 * 120.63030 * 126.37310 * 14 13 12 16 16 O 1.21285 * 119.99986 * 180.02562 * 15 14 13 17 17 C 1.50704 * 120.00168 * 359.97438 * 15 14 13 18 18 H 1.09003 * 110.32637 * 40.70197 * 17 15 14 19 19 C 1.54914 * 110.36533 * 278.46555 * 17 15 14 20 20 C 1.55157 * 101.58100 * 204.14735 * 19 17 15 21 21 C 1.54324 * 102.93875 * 35.50545 * 20 19 17 22 22 N 1.47183 * 107.29584 * 337.71086 * 21 20 19 23 23 C 1.34771 * 125.73554 * 179.04453 * 22 21 20 24 24 N 1.34783 * 120.00382 * 0.05839 * 23 22 21 25 25 O 1.21589 * 120.00072 * 180.02562 * 23 22 21 26 26 C 1.46928 * 118.73792 * 306.39072 * 14 13 12 27 27 H 0.96991 * 119.99542 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46115 * 61.29463 * 11 9 7 29 29 H 1.09004 * 109.45806 * 301.32348 * 11 9 7 30 30 H 1.08997 * 109.49901 * 58.58690 * 12 11 9 31 31 H 1.08992 * 109.50107 * 178.69269 * 12 11 9 32 32 H 1.08998 * 109.58358 * 174.41666 * 13 12 11 33 33 H 1.08995 * 109.58474 * 294.70356 * 13 12 11 34 34 H 1.08996 * 111.00714 * 322.22666 * 19 17 15 35 35 H 1.09007 * 110.99960 * 86.07435 * 19 17 15 36 36 H 1.09006 * 110.71388 * 153.86319 * 20 19 17 37 37 H 1.09000 * 110.72269 * 277.14090 * 20 19 17 38 38 H 1.09007 * 109.88345 * 97.22588 * 21 20 19 39 39 H 1.09001 * 109.88054 * 218.23300 * 21 20 19 40 40 H 0.97001 * 119.99320 * 359.97438 * 24 23 22 41 41 H 0.96994 * 120.00221 * 180.02562 * 24 23 22 42 42 H 1.08999 * 109.58766 * 173.40097 * 26 14 13 43 43 H 1.09002 * 109.58364 * 293.68193 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0017 10 1 0.6256 -2.5578 0.8923 11 6 0.3706 -2.5817 -1.2473 12 6 -0.4196 -3.8922 -1.2305 13 6 0.5567 -5.0727 -1.2480 14 7 1.5003 -4.9225 -0.1318 15 6 1.6779 -5.9207 0.7563 16 8 2.4594 -5.7842 1.6737 17 6 0.9045 -7.2059 0.6100 18 1 0.8505 -7.4980 -0.4387 19 6 -0.5193 -7.0484 1.1998 20 6 -0.8828 -8.5195 1.5332 21 6 0.4676 -9.1154 1.9838 22 7 1.5304 -8.2751 1.4089 23 6 2.8549 -8.4520 1.5839 24 7 3.3044 -9.4724 2.3411 25 8 3.6446 -7.6914 1.0581 26 6 2.2463 -3.6634 -0.0018 27 1 -0.4849 0.8400 0.0004 28 1 0.9988 -2.5478 -2.1375 29 1 -0.3221 -1.7401 -1.2595 30 1 -1.0293 -3.9379 -0.3282 31 1 -1.0637 -3.9400 -2.1084 32 1 0.0041 -6.0055 -1.1363 33 1 1.1022 -5.0818 -2.1916 34 1 -0.5033 -6.4359 2.1012 35 1 -1.2049 -6.6345 0.4603 36 1 -1.6124 -8.5625 2.3420 37 1 -1.2556 -9.0348 0.6481 38 1 0.5328 -9.1050 3.0719 39 1 0.5627 -10.1373 1.6167 40 1 2.6745 -10.0792 2.7604 41 1 4.2577 -9.5994 2.4673 42 1 2.8085 -3.6665 0.9320 43 1 2.9331 -3.5574 -0.8415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118778708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:15 Heat of formation + Delta-G solvation = -59.891740 kcal Electronic energy + Delta-G solvation = -25289.775020 eV Core-core repulsion = 21755.858659 eV Total energy + Delta-G solvation = -3533.916362 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64713 -38.88113 -37.27476 -36.40770 -33.60331 -33.39136 -31.34340 -31.14531 -30.49232 -29.11975 -25.10912 -24.83271 -23.65783 -21.74742 -21.54783 -20.85522 -19.38319 -18.57326 -17.59938 -17.47202 -16.56084 -16.21764 -15.39372 -15.28255 -14.70232 -14.54948 -14.35245 -14.06884 -13.60970 -13.47668 -13.25326 -13.09195 -12.72888 -12.50858 -12.28479 -12.16085 -11.92877 -11.60931 -11.48572 -11.04057 -10.95748 -10.77278 -10.65823 -10.24604 -9.98604 -9.90725 -9.71714 -9.56190 -9.36742 -9.21818 -8.78845 -8.47696 -8.32943 -7.72413 -5.97832 -4.04038 2.63735 3.23081 3.31961 3.39914 3.43534 3.45521 3.68543 4.18567 4.35383 4.46981 4.50714 4.68976 4.91231 5.04298 5.14418 5.31001 5.35544 5.40704 5.50702 5.62884 5.69334 5.70700 5.83639 5.98977 6.02168 6.21099 6.39518 6.49898 6.56413 6.76930 6.79657 6.91165 6.97954 7.09999 7.25589 7.40331 7.74511 7.96046 7.98766 8.12740 8.16867 8.44301 8.74904 8.91734 9.00768 9.60591 11.07713 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.024778 B = 0.004184 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.753519 B = 6691.153741 C = 7321.149938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.112 4.112 12 C -0.133 4.133 13 C 0.109 3.891 14 N -0.604 5.604 15 C 0.509 3.491 16 O -0.517 6.517 17 C 0.136 3.864 18 H 0.092 0.908 19 C -0.123 4.123 20 C -0.128 4.128 21 C 0.101 3.899 22 N -0.624 5.624 23 C 0.724 3.276 24 N -0.869 5.869 25 O -0.560 6.560 26 C 0.122 3.878 27 H 0.259 0.741 28 H 0.035 0.965 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.391 0.609 41 H 0.413 0.587 42 H 0.076 0.924 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.087 -20.845 0.983 21.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.015 4.015 14 N -0.338 5.338 15 C 0.294 3.706 16 O -0.392 6.392 17 C 0.028 3.972 18 H 0.109 0.891 19 C -0.162 4.162 20 C -0.166 4.166 21 C -0.022 4.022 22 N -0.365 5.365 23 C 0.424 3.576 24 N -0.438 5.438 25 O -0.434 6.434 26 C 0.001 3.999 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.219 0.781 41 H 0.245 0.755 42 H 0.095 0.905 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.275 -20.048 1.065 20.526 hybrid contribution 0.418 0.510 0.203 0.690 sum -3.857 -19.537 1.268 19.955 Atomic orbital electron populations 1.69884 1.05862 1.26246 1.50946 1.24927 0.94852 0.99024 0.95020 0.86535 0.80274 0.83718 0.77487 1.19725 1.21065 1.21073 1.21150 0.93091 0.90336 1.50383 0.92453 1.18968 0.92970 0.91230 0.94703 0.95358 1.21622 0.99447 0.95317 0.98621 1.22001 0.97573 0.96762 1.00829 1.21749 0.91406 0.98701 0.89627 1.48153 1.42482 1.16089 1.27062 1.20159 0.83035 0.84527 0.82856 1.90689 1.35620 1.80452 1.32447 1.21700 0.92489 0.87029 0.95973 0.89064 1.22800 0.93476 0.97194 1.02697 1.22610 0.95974 0.95540 1.02429 1.22010 0.87447 0.94335 0.98399 1.47293 1.03691 1.31017 1.54475 1.15363 0.81024 0.81242 0.79959 1.42926 1.11471 1.32809 1.56578 1.91049 1.53680 1.45740 1.52948 1.21914 0.94879 0.81651 1.01431 0.93127 0.94611 0.88662 0.92383 0.92541 0.91501 0.92079 0.89692 0.88664 0.89521 0.90123 0.91629 0.91497 0.78134 0.75549 0.90515 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.21 11.31 55.43 0.63 -24.58 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.24 8.56 -34.44 -0.29 -14.54 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.04 1.02 2.25 -91.67 -0.21 0.82 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.54 4.96 -26.69 -0.13 -2.67 16 12 C -0.13 -2.34 6.08 -26.61 -0.16 -2.50 16 13 C 0.11 1.73 6.20 -3.70 -0.02 1.71 16 14 N -0.60 -12.02 2.97 -172.78 -0.51 -12.54 16 15 C 0.51 10.17 6.06 -10.99 -0.07 10.11 16 16 O -0.52 -12.59 13.32 -18.30 -0.24 -12.84 16 17 C 0.14 1.96 2.55 -67.57 -0.17 1.78 16 18 H 0.09 1.18 6.89 -51.93 -0.36 0.82 16 19 C -0.12 -1.33 6.24 -24.58 -0.15 -1.49 16 20 C -0.13 -0.91 6.95 -24.90 -0.17 -1.08 16 21 C 0.10 0.84 6.16 -2.98 -0.02 0.82 16 22 N -0.62 -8.47 3.14 -169.90 -0.53 -9.00 16 23 C 0.72 11.63 8.01 -86.92 -0.70 10.93 16 24 N -0.87 -9.16 8.84 27.63 0.24 -8.91 16 25 O -0.56 -12.16 14.63 -18.57 -0.27 -12.43 16 26 C 0.12 2.86 5.65 -3.73 -0.02 2.83 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.10 2.43 6.04 -51.93 -0.31 2.12 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.83 4.80 -51.93 -0.25 0.58 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.08 8.05 -51.93 -0.42 0.67 16 35 H 0.09 0.89 7.35 -51.92 -0.38 0.51 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.39 2.73 7.82 -40.82 -0.32 2.41 16 41 H 0.41 3.89 8.93 -40.82 -0.36 3.53 16 42 H 0.08 1.96 7.00 -51.93 -0.36 1.60 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -36.63 334.40 -9.42 -46.06 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.54 Total: 4.32 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -2.21 Total: 8.36 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.18 Total: -55.04 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.52 Total: -25.26 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.63 -9.42 -46.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118778708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.836 kcal (2) G-P(sol) polarization free energy of solvation -36.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds