Wall clock time and date at job start Fri Apr 10 2020 20:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99905 * 2 1 4 4 H 1.48497 * 109.47251 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47194 * 299.99703 * 3 2 1 6 6 H 1.48504 * 109.47306 * 60.00035 * 3 2 1 7 7 C 1.37878 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99798 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00002 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.52576 * 299.92257 * 9 7 2 11 11 C 1.53046 * 109.49577 * 60.00123 * 9 7 2 12 12 C 1.53039 * 109.52798 * 181.31010 * 11 9 7 13 13 C 1.53200 * 109.31160 * 298.64112 * 12 11 9 14 14 N 1.46931 * 108.77279 * 54.63574 * 13 12 11 15 15 C 1.34771 * 120.63030 * 126.37310 * 14 13 12 16 16 O 1.21285 * 119.99986 * 180.02562 * 15 14 13 17 17 C 1.50704 * 120.00168 * 359.97438 * 15 14 13 18 18 H 1.09003 * 110.32637 * 40.70197 * 17 15 14 19 19 C 1.54914 * 110.36533 * 278.46555 * 17 15 14 20 20 C 1.55157 * 101.58100 * 204.14735 * 19 17 15 21 21 C 1.54324 * 102.93875 * 35.50545 * 20 19 17 22 22 N 1.47183 * 107.29584 * 337.71086 * 21 20 19 23 23 C 1.34771 * 125.73554 * 179.04453 * 22 21 20 24 24 N 1.34783 * 120.00382 * 0.05839 * 23 22 21 25 25 O 1.21589 * 120.00072 * 180.02562 * 23 22 21 26 26 C 1.46928 * 118.73792 * 306.39072 * 14 13 12 27 27 H 0.96991 * 119.99542 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46115 * 61.29463 * 11 9 7 29 29 H 1.09004 * 109.45806 * 301.32348 * 11 9 7 30 30 H 1.08997 * 109.49901 * 58.58690 * 12 11 9 31 31 H 1.08992 * 109.50107 * 178.69269 * 12 11 9 32 32 H 1.08998 * 109.58358 * 174.41666 * 13 12 11 33 33 H 1.08995 * 109.58474 * 294.70356 * 13 12 11 34 34 H 1.08996 * 111.00714 * 322.22666 * 19 17 15 35 35 H 1.09007 * 110.99960 * 86.07435 * 19 17 15 36 36 H 1.09006 * 110.71388 * 153.86319 * 20 19 17 37 37 H 1.09000 * 110.72269 * 277.14090 * 20 19 17 38 38 H 1.09007 * 109.88345 * 97.22588 * 21 20 19 39 39 H 1.09001 * 109.88054 * 218.23300 * 21 20 19 40 40 H 0.97001 * 119.99320 * 359.97438 * 24 23 22 41 41 H 0.96994 * 120.00221 * 180.02562 * 24 23 22 42 42 H 1.08999 * 109.58766 * 173.40097 * 26 14 13 43 43 H 1.09002 * 109.58364 * 293.68193 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0017 10 1 0.6256 -2.5578 0.8923 11 6 0.3706 -2.5817 -1.2473 12 6 -0.4196 -3.8922 -1.2305 13 6 0.5567 -5.0727 -1.2480 14 7 1.5003 -4.9225 -0.1318 15 6 1.6779 -5.9207 0.7563 16 8 2.4594 -5.7842 1.6737 17 6 0.9045 -7.2059 0.6100 18 1 0.8505 -7.4980 -0.4387 19 6 -0.5193 -7.0484 1.1998 20 6 -0.8828 -8.5195 1.5332 21 6 0.4676 -9.1154 1.9838 22 7 1.5304 -8.2751 1.4089 23 6 2.8549 -8.4520 1.5839 24 7 3.3044 -9.4724 2.3411 25 8 3.6446 -7.6914 1.0581 26 6 2.2463 -3.6634 -0.0018 27 1 -0.4849 0.8400 0.0004 28 1 0.9988 -2.5478 -2.1375 29 1 -0.3221 -1.7401 -1.2595 30 1 -1.0293 -3.9379 -0.3282 31 1 -1.0637 -3.9400 -2.1084 32 1 0.0041 -6.0055 -1.1363 33 1 1.1022 -5.0818 -2.1916 34 1 -0.5033 -6.4359 2.1012 35 1 -1.2049 -6.6345 0.4603 36 1 -1.6124 -8.5625 2.3420 37 1 -1.2556 -9.0348 0.6481 38 1 0.5328 -9.1050 3.0719 39 1 0.5627 -10.1373 1.6167 40 1 2.6745 -10.0792 2.7604 41 1 4.2577 -9.5994 2.4673 42 1 2.8085 -3.6665 0.9320 43 1 2.9331 -3.5574 -0.8415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118778708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:14 Heat of formation + Delta-G solvation = -87.219321 kcal Electronic energy + Delta-G solvation = -25290.960033 eV Core-core repulsion = 21755.858659 eV Total energy + Delta-G solvation = -3535.101375 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.85703 -40.30848 -38.47686 -37.95555 -35.37331 -34.67721 -33.06532 -32.18122 -32.02961 -30.29016 -27.05851 -26.29734 -24.81444 -23.36002 -22.56420 -22.07459 -20.83976 -19.90227 -18.98502 -18.68558 -18.22211 -17.57019 -16.75685 -16.68970 -16.34356 -15.94704 -15.61809 -15.36934 -15.06733 -14.84173 -14.60889 -14.34585 -14.14616 -14.05933 -13.62088 -13.59135 -13.27568 -12.89833 -12.74096 -12.69585 -12.53947 -12.22808 -11.90263 -11.85196 -11.69253 -11.57947 -11.32009 -11.23480 -10.85218 -10.69569 -10.56293 -10.42772 -9.58265 -9.40334 -8.12038 -6.26883 1.37803 1.39724 1.51654 1.58524 1.81744 2.16052 2.32790 2.43846 3.13778 3.30541 3.55054 3.62529 3.76155 3.99195 4.15560 4.18822 4.27848 4.36136 4.46124 4.53533 4.61989 4.74434 4.78885 4.85643 4.88225 4.89803 4.97876 5.08907 5.15639 5.23054 5.31384 5.34875 5.50047 5.60046 5.61306 5.93402 5.94193 6.02828 6.14019 6.35254 6.63061 6.81418 7.01506 7.33745 7.40784 7.73744 8.91704 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.024778 B = 0.004184 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.753519 B = 6691.153741 C = 7321.149938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.021 3.979 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.044 0.956 9 C 0.046 3.954 10 H -0.011 1.011 11 C -0.106 4.106 12 C -0.123 4.123 13 C 0.107 3.893 14 N -0.610 5.610 15 C 0.496 3.504 16 O -0.573 6.573 17 C 0.137 3.863 18 H 0.116 0.884 19 C -0.122 4.122 20 C -0.112 4.112 21 C 0.091 3.909 22 N -0.628 5.628 23 C 0.711 3.289 24 N -0.846 5.846 25 O -0.629 6.629 26 C 0.136 3.864 27 H 0.263 0.737 28 H 0.032 0.968 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.412 0.588 41 H 0.418 0.582 42 H 0.039 0.961 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.400 -23.401 0.021 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.179 4.179 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.063 0.937 9 C 0.027 3.973 10 H 0.007 0.993 11 C -0.144 4.144 12 C -0.161 4.161 13 C -0.014 4.014 14 N -0.343 5.343 15 C 0.284 3.716 16 O -0.451 6.451 17 C 0.029 3.971 18 H 0.133 0.867 19 C -0.161 4.161 20 C -0.150 4.150 21 C -0.030 4.030 22 N -0.368 5.368 23 C 0.411 3.589 24 N -0.416 5.416 25 O -0.508 6.508 26 C 0.013 3.987 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.133 0.867 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.243 0.757 41 H 0.250 0.750 42 H 0.058 0.942 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.663 -22.680 0.117 23.639 hybrid contribution 1.146 1.297 0.571 1.822 sum -5.517 -21.383 0.689 22.094 Atomic orbital electron populations 1.69995 1.06868 1.27189 1.50796 1.25637 0.95759 1.02034 0.94434 0.85569 0.78823 0.79718 0.77922 1.19884 1.19743 1.20571 1.21456 0.92843 0.92237 1.51491 0.93732 1.18837 0.92974 0.91100 0.94431 0.99309 1.21421 0.98719 0.97552 0.96685 1.21899 0.97558 0.94251 1.02412 1.22037 0.90675 1.00115 0.88606 1.48260 1.42814 1.14770 1.28457 1.21349 0.82563 0.86087 0.81576 1.90651 1.38080 1.81678 1.34674 1.21880 0.93300 0.84028 0.97931 0.86662 1.22860 0.91387 0.99865 1.01938 1.22669 0.95523 0.92282 1.04478 1.22420 0.86484 0.95149 0.98915 1.47433 1.03862 1.31188 1.54293 1.15776 0.81557 0.81499 0.80108 1.42662 1.12293 1.31574 1.55060 1.90999 1.55721 1.48366 1.55733 1.21412 0.94527 0.83471 0.99295 0.92797 0.94874 0.91552 0.92833 0.88693 0.86662 0.90881 0.92474 0.86461 0.87370 0.87197 0.90944 0.88148 0.75748 0.74959 0.94215 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.68 11.31 21.45 0.24 -52.44 16 2 C 0.02 1.18 5.30 84.65 0.45 1.63 16 3 Si 0.95 45.12 29.54 68.60 2.03 47.14 16 4 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 7 C -0.54 -31.74 8.56 25.60 0.22 -31.52 16 8 H 0.04 2.64 7.74 -2.91 -0.02 2.62 16 9 C 0.05 2.44 2.25 -11.47 -0.03 2.42 16 10 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 11 C -0.11 -4.87 4.96 30.62 0.15 -4.72 16 12 C -0.12 -4.10 6.08 30.67 0.19 -3.91 16 13 C 0.11 3.17 6.20 86.36 0.54 3.71 16 14 N -0.61 -24.69 2.97 -818.94 -2.43 -27.12 16 15 C 0.50 20.24 6.06 87.66 0.53 20.77 16 16 O -0.57 -29.54 13.32 19.77 0.26 -29.28 16 17 C 0.14 3.65 2.55 44.73 0.11 3.76 16 18 H 0.12 2.53 6.89 -2.39 -0.02 2.51 16 19 C -0.12 -2.26 6.24 31.99 0.20 -2.06 16 20 C -0.11 -1.02 6.95 31.78 0.22 -0.80 16 21 C 0.09 1.15 6.16 86.70 0.53 1.68 16 22 N -0.63 -15.85 3.14 -809.69 -2.54 -18.40 16 23 C 0.71 22.61 8.01 179.05 1.43 24.04 16 24 N -0.85 -16.77 8.84 -184.74 -1.63 -18.40 16 25 O -0.63 -28.32 14.63 18.81 0.28 -28.05 16 26 C 0.14 6.76 5.65 86.35 0.49 7.25 16 27 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 3.46 6.04 -2.39 -0.01 3.44 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.12 2.32 4.80 -2.39 -0.01 2.31 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.39 8.05 -2.39 -0.02 1.37 16 35 H 0.12 1.64 7.35 -2.38 -0.02 1.63 16 36 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.41 4.67 7.82 -92.71 -0.73 3.95 16 41 H 0.42 7.61 8.93 -92.71 -0.83 6.78 16 42 H 0.04 2.22 7.00 -2.39 -0.02 2.20 16 43 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -88.73 334.40 0.72 -88.01 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -0.52 Total: 16.28 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 5.04 Total: 22.26 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -6.37 Total: -116.36 kcal Atomic # 8 Polarization: -57.87 SS G_CDS: 0.54 Total: -57.33 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -88.73 0.72 -88.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118778708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.795 kcal (2) G-P(sol) polarization free energy of solvation -88.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds