Wall clock time and date at job start Fri Apr 10 2020 20:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99711 * 2 1 4 4 O 1.42907 * 109.47007 * 75.00126 * 3 2 1 5 5 C 1.36098 * 116.99653 * 74.99954 * 4 3 2 6 6 C 1.38469 * 120.02664 * 0.02562 * 5 4 3 7 7 C 1.38275 * 120.07111 * 179.97438 * 6 5 4 8 8 C 1.38707 * 120.11938 * 0.02562 * 7 6 5 9 9 O 1.35978 * 119.97389 * 180.02562 * 8 7 6 10 10 C 1.42901 * 116.99634 * 359.97438 * 9 8 7 11 11 C 1.38644 * 120.05334 * 359.78641 * 8 7 6 12 12 C 1.38703 * 119.92351 * 0.44467 * 11 8 7 13 13 N 1.39957 * 120.05767 * 179.81150 * 12 11 8 14 14 C 1.46499 * 119.99952 * 359.72472 * 13 12 11 15 15 C 1.53000 * 109.46840 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47291 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99920 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47282 * 89.99593 * 21 19 17 23 23 H 1.48498 * 109.47211 * 210.00040 * 21 19 17 24 24 H 1.48506 * 109.46856 * 330.00220 * 21 19 17 25 25 H 1.09000 * 109.47320 * 60.00035 * 1 2 3 26 26 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47434 * 299.99833 * 1 2 3 28 28 H 1.08995 * 109.47339 * 315.00462 * 3 2 1 29 29 H 1.08997 * 109.47517 * 194.99948 * 3 2 1 30 30 H 1.08004 * 119.96484 * 359.97438 * 6 5 4 31 31 H 1.07990 * 119.94032 * 180.02562 * 7 6 5 32 32 H 1.08994 * 109.47425 * 299.99977 * 10 9 8 33 33 H 1.09005 * 109.46994 * 60.00174 * 10 9 8 34 34 H 1.09007 * 109.46901 * 179.97438 * 10 9 8 35 35 H 1.07993 * 120.04142 * 180.25504 * 11 8 7 36 36 H 0.97000 * 119.99627 * 179.71779 * 13 12 11 37 37 H 1.09002 * 109.47391 * 59.99749 * 14 13 12 38 38 H 1.09001 * 109.46813 * 299.99805 * 14 13 12 39 39 H 1.09001 * 109.47194 * 299.99493 * 15 14 13 40 40 H 1.08992 * 109.47399 * 59.99666 * 15 14 13 41 41 H 1.09001 * 109.47109 * 299.99380 * 16 15 14 42 42 H 1.09002 * 109.47508 * 59.99571 * 16 15 14 43 43 H 0.97000 * 119.99425 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 8 1.8853 1.8825 1.3014 5 6 2.7199 1.4124 2.2683 6 6 3.6372 0.4193 1.9689 7 6 4.4860 -0.0586 2.9504 8 6 4.4208 0.4547 4.2373 9 8 5.2572 -0.0170 5.2001 10 6 6.1767 -1.0412 4.8156 11 6 3.5069 1.4519 4.5417 12 6 2.6513 1.9294 3.5599 13 7 1.7249 2.9332 3.8650 14 6 1.6543 3.4763 5.2238 15 6 0.5670 4.5508 5.2876 16 6 0.4936 5.1184 6.7065 17 6 -0.5769 6.1772 6.7693 18 1 -1.1476 6.4212 5.8854 19 6 -0.8278 6.8345 7.9550 20 7 -0.1332 6.5370 9.0315 21 14 -2.1553 8.1464 8.0331 22 1 -3.4515 7.5183 8.3947 23 1 -1.7922 9.1577 9.0581 24 1 -2.2776 8.8061 6.7082 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.4940 1.9330 -0.7266 29 1 3.0647 1.2338 -0.2660 30 1 3.6899 0.0175 0.9678 31 1 5.2009 -0.8328 2.7145 32 1 5.6242 -1.9094 4.4566 33 1 6.8242 -0.6688 4.0218 34 1 6.7833 -1.3261 5.6753 35 1 3.4591 1.8543 5.5427 36 1 1.1298 3.2693 3.1768 37 1 2.6157 3.9154 5.4900 38 1 1.4146 2.6753 5.9232 39 1 0.8062 5.3518 4.5882 40 1 -0.3943 4.1112 5.0216 41 1 0.2545 4.3176 7.4063 42 1 1.4550 5.5581 6.9722 43 1 -0.3100 6.9992 9.8658 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:30 Heat of formation + Delta-G solvation = -106.523510 kcal Electronic energy + Delta-G solvation = -23334.103664 eV Core-core repulsion = 19765.872446 eV Total energy + Delta-G solvation = -3568.231218 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51204 -39.24420 -37.82773 -36.41794 -35.30379 -33.46967 -31.53248 -30.04545 -28.78739 -27.73481 -27.11838 -26.09234 -25.36383 -23.35905 -21.83464 -21.25297 -20.29585 -18.43260 -17.92898 -17.14650 -17.02316 -16.33739 -15.73302 -15.69560 -15.39233 -15.22131 -14.76753 -14.71457 -14.41214 -14.06914 -13.82795 -13.65764 -12.92293 -12.62019 -12.50842 -12.31805 -12.09346 -11.95762 -11.81356 -11.70320 -11.32074 -10.96076 -10.88494 -10.65527 -10.61530 -10.55818 -10.31369 -9.95964 -9.58069 -9.44721 -9.11183 -8.36033 -8.05033 -6.97934 -6.00962 -4.03603 1.51574 1.69403 3.17595 3.25468 3.31684 3.37927 3.41120 3.47506 3.85310 3.94465 4.45724 4.71217 4.80060 4.92258 5.05925 5.07630 5.09316 5.12021 5.22017 5.31130 5.34960 5.39975 5.48488 5.62100 5.70315 5.79165 5.82798 5.91844 6.17369 6.33973 6.44863 6.58248 6.59128 6.63489 6.71213 7.01339 7.21209 7.44272 7.64543 7.69709 7.77812 7.98112 8.04350 8.40156 9.02957 9.60503 11.10396 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.013737 B = 0.003206 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.737969 B = 8730.547670 C =10538.203876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.398 6.398 3 C 0.216 3.784 4 O -0.334 6.334 5 C 0.011 3.989 6 C -0.110 4.110 7 C -0.242 4.242 8 C 0.146 3.854 9 O -0.318 6.318 10 C 0.031 3.969 11 C -0.208 4.208 12 C 0.245 3.755 13 N -0.733 5.733 14 C 0.120 3.880 15 C -0.119 4.119 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.138 0.862 36 H 0.404 0.596 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.032 -15.668 -17.539 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.317 6.317 3 C 0.102 3.898 4 O -0.250 6.250 5 C -0.036 4.036 6 C -0.129 4.129 7 C -0.264 4.264 8 C 0.100 3.900 9 O -0.231 6.231 10 C -0.065 4.065 11 C -0.232 4.232 12 C 0.138 3.862 13 N -0.361 5.361 14 C -0.004 4.004 15 C -0.157 4.157 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.156 0.844 36 H 0.239 0.761 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.020 -15.496 -16.922 24.655 hybrid contribution -0.902 0.708 -0.456 1.234 sum 8.118 -14.788 -17.378 24.220 Atomic orbital electron populations 1.22795 0.80242 1.02895 1.00626 1.88022 1.21038 1.28951 1.93737 1.24058 0.99357 0.83161 0.83177 1.86138 1.58259 1.60868 1.19774 1.18175 0.96791 1.00637 0.88037 1.20697 0.95747 0.96786 0.99715 1.20653 1.06087 1.06875 0.92746 1.18559 0.90592 0.93520 0.87311 1.86076 1.47424 1.53581 1.36025 1.22988 0.91830 0.89688 1.01977 1.19626 1.00428 1.02934 1.00252 1.16906 0.90402 0.89506 0.89380 1.44928 1.38781 1.39694 1.12659 1.21651 1.00208 0.96660 0.81846 1.21839 0.96019 0.95880 1.01998 1.19029 0.97356 0.95738 0.89204 1.21216 1.18895 1.20186 0.95695 0.92686 1.25025 0.96410 0.97231 0.95792 1.69967 1.40546 1.42290 1.00546 0.86585 0.82028 0.81545 0.77781 1.20664 1.21201 1.19896 0.93869 0.89648 0.93020 0.88211 0.88465 0.85316 0.85962 0.92855 0.92882 0.88594 0.84392 0.76083 0.92386 0.92424 0.92785 0.92815 0.96317 0.96299 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.89 101.05 1.10 1.36 16 2 O -0.40 -4.15 10.19 -59.04 -0.60 -4.75 16 3 C 0.22 2.01 6.39 101.05 0.65 2.65 16 4 O -0.33 -4.26 9.44 -43.86 -0.41 -4.67 16 5 C 0.01 0.15 6.64 -39.10 -0.26 -0.11 16 6 C -0.11 -1.38 8.78 -39.48 -0.35 -1.73 16 7 C -0.24 -3.02 9.03 -39.39 -0.36 -3.38 16 8 C 0.15 2.08 6.68 -39.26 -0.26 1.81 16 9 O -0.32 -4.23 10.50 -19.67 -0.21 -4.44 16 10 C 0.03 0.26 9.81 101.05 0.99 1.25 16 11 C -0.21 -3.25 9.25 -39.26 -0.36 -3.61 16 12 C 0.24 3.81 6.67 -83.58 -0.56 3.25 16 13 N -0.73 -11.65 5.73 -58.51 -0.34 -11.99 16 14 C 0.12 2.10 4.92 -4.04 -0.02 2.08 16 15 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 18 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 21 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.04 0.29 8.11 -51.93 -0.42 -0.13 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.50 8.03 -51.93 -0.42 0.09 16 28 H 0.10 0.68 8.01 -51.93 -0.42 0.27 16 29 H 0.10 0.75 6.70 -51.93 -0.35 0.41 16 30 H 0.13 1.37 5.85 -52.48 -0.31 1.06 16 31 H 0.12 1.22 6.28 -52.49 -0.33 0.89 16 32 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 33 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.14 2.19 6.73 -52.49 -0.35 1.84 16 36 H 0.40 6.15 7.83 -40.82 -0.32 5.83 16 37 H 0.06 1.03 7.94 -51.93 -0.41 0.61 16 38 H 0.06 1.02 7.96 -51.93 -0.41 0.61 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 357.54 15.07 5.39 5.39 Total: -1.00 -32.21 357.54 -7.18 -39.39 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.61 Total: 2.60 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -0.12 Total: -12.01 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.40 Total: -38.16 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.22 Total: -13.86 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.21 -7.18 -39.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.133 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds