Wall clock time and date at job start Fri Apr 10 2020 20:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36174 * 119.45362 * 2 1 4 4 C 1.40521 * 119.95817 * 180.02562 * 3 2 1 5 5 C 1.40580 * 121.19485 * 179.97438 * 4 3 2 6 6 C 1.36096 * 119.66273 * 180.02562 * 5 4 3 7 7 C 1.39353 * 120.97034 * 359.97438 * 6 5 4 8 8 C 1.36158 * 120.96267 * 0.02562 * 7 6 5 9 9 C 1.40359 * 119.66971 * 359.96022 * 8 7 6 10 10 C 1.41142 * 121.25799 * 180.02562 * 9 8 7 11 11 N 1.39317 * 120.30632 * 0.02562 * 10 9 8 12 12 C 1.46497 * 119.99985 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.41793 * 35.14334 * 12 11 10 14 14 C 1.52963 * 109.41416 * 155.00273 * 12 11 10 15 15 C 1.53227 * 109.40733 * 183.70714 * 14 12 11 16 16 C 1.51269 * 108.53442 * 305.37116 * 15 14 12 17 17 C 1.37878 * 120.84795 * 231.32244 * 16 15 14 18 18 N 1.31516 * 120.00070 * 190.01123 * 17 16 15 19 19 Si 1.86802 * 120.00130 * 10.01424 * 17 16 15 20 20 H 1.48498 * 109.46961 * 179.97438 * 19 17 16 21 21 H 1.48501 * 109.46877 * 60.00007 * 19 17 16 22 22 H 1.48496 * 109.46825 * 299.99886 * 19 17 16 23 23 C 1.51265 * 118.30126 * 51.60093 * 16 15 14 24 24 C 1.52963 * 109.41835 * 275.35458 * 12 11 10 25 25 C 1.37886 * 119.39024 * 180.29488 * 10 9 8 26 26 H 1.09005 * 109.47186 * 89.99924 * 1 2 3 27 27 H 1.08996 * 109.47264 * 209.99665 * 1 2 3 28 28 H 1.08999 * 109.47260 * 330.00522 * 1 2 3 29 29 H 1.08001 * 120.02406 * 0.04627 * 3 2 1 30 30 H 1.08000 * 120.16838 * 0.02562 * 5 4 3 31 31 H 1.07995 * 119.51223 * 180.02562 * 6 5 4 32 32 H 1.07998 * 119.51617 * 179.97438 * 7 6 5 33 33 H 1.07994 * 120.16380 * 179.97438 * 8 7 6 34 34 H 0.96996 * 119.99968 * 0.02562 * 11 10 9 35 35 H 1.09000 * 109.48353 * 63.72212 * 14 12 11 36 36 H 1.09005 * 109.48050 * 303.68359 * 14 12 11 37 37 H 1.09000 * 109.62687 * 185.65389 * 15 14 12 38 38 H 1.09003 * 109.78432 * 65.17783 * 15 14 12 39 39 H 0.97003 * 119.99606 * 5.66673 * 18 17 16 40 40 H 1.09000 * 109.62661 * 68.11553 * 23 16 15 41 41 H 1.09004 * 109.62903 * 188.68873 * 23 16 15 42 42 H 1.09000 * 109.47638 * 296.27865 * 24 12 11 43 43 H 1.09000 * 109.47707 * 56.29916 * 24 12 11 44 44 H 1.08007 * 119.62424 * 179.70264 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1766 1.1857 0.0000 4 6 3.5818 1.1981 -0.0005 5 6 4.2993 2.4070 -0.0011 6 6 5.6600 2.3826 -0.0021 7 6 6.3556 1.1751 -0.0021 8 6 5.6935 -0.0147 -0.0016 9 6 4.2900 -0.0288 -0.0002 10 6 3.5698 -1.2426 0.0009 11 7 4.2454 -2.4610 0.0012 12 6 3.4911 -3.7168 0.0029 13 1 2.5833 -3.5951 -0.5880 14 6 4.3496 -4.8264 -0.6067 15 6 3.5289 -6.1176 -0.6899 16 6 2.9882 -6.4333 0.6871 17 6 3.1650 -7.6807 1.2472 18 7 2.5260 -8.0027 2.3507 19 14 4.3120 -8.9136 0.4386 20 1 4.3273 -10.1692 1.2313 21 1 5.6842 -8.3488 0.3804 22 1 3.8368 -9.2026 -0.9383 23 6 2.2431 -5.3474 1.4313 24 6 3.1153 -4.0824 1.4399 25 6 2.1913 -1.2115 -0.0039 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.6281 2.1161 0.0008 30 1 3.7734 3.3503 -0.0007 31 1 6.2088 3.3127 -0.0021 32 1 7.4355 1.1831 -0.0034 33 1 6.2455 -0.9429 -0.0020 34 1 5.2152 -2.4777 0.0010 35 1 5.2266 -4.9927 0.0188 36 1 4.6670 -4.5323 -1.6072 37 1 4.1653 -6.9347 -1.0296 38 1 2.7012 -5.9844 -1.3866 39 1 1.8690 -7.3953 2.7254 40 1 1.2984 -5.1409 0.9283 41 1 2.0531 -5.6694 2.4552 42 1 4.0216 -4.2663 2.0170 43 1 2.5582 -3.2608 1.8900 44 1 1.6364 -2.1381 -0.0080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167846292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:18:58 Heat of formation + Delta-G solvation = 16.675753 kcal Electronic energy + Delta-G solvation = -23341.727597 eV Core-core repulsion = 20221.980714 eV Total energy + Delta-G solvation = -3119.746883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.41834 -37.95216 -36.51284 -34.89775 -32.47920 -31.41277 -30.70483 -29.74145 -28.68772 -26.96556 -26.17926 -23.26854 -22.31103 -21.81791 -21.62112 -20.48698 -19.64252 -17.38718 -17.14554 -16.51704 -16.10135 -15.21089 -15.04990 -14.12932 -14.05786 -13.91686 -13.90359 -13.78715 -13.20094 -13.11243 -12.91648 -12.45415 -12.40682 -12.14488 -12.01651 -11.71963 -11.65722 -11.30083 -11.03005 -10.90358 -10.81165 -10.68876 -10.43565 -10.20773 -10.10391 -10.07038 -9.62912 -9.39090 -8.74364 -8.52555 -8.37424 -8.31187 -6.79666 -6.49309 -4.08510 0.81320 1.16614 2.30578 3.17002 3.36122 3.37471 3.57266 3.67449 4.29036 4.43145 4.73344 4.86282 4.95701 5.01744 5.16394 5.27911 5.36269 5.43434 5.50259 5.53069 5.65512 5.69290 5.74587 5.80736 5.93113 6.01830 6.09876 6.13160 6.24934 6.32963 6.43518 6.47865 6.54154 6.57491 6.62208 6.64872 6.76253 6.83524 6.91876 6.93095 6.97444 7.16064 7.21526 7.27321 7.51130 7.65659 7.95291 8.01500 8.27026 8.79816 9.53672 10.87690 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.021837 B = 0.003901 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.915078 B = 7176.535754 C = 8043.073816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.017 4.017 3 C -0.196 4.196 4 C -0.001 4.001 5 C -0.124 4.124 6 C -0.108 4.108 7 C -0.146 4.146 8 C -0.085 4.085 9 C -0.109 4.109 10 C 0.248 3.752 11 N -0.730 5.730 12 C 0.160 3.840 13 H 0.071 0.929 14 C -0.115 4.115 15 C -0.001 4.001 16 C -0.572 4.572 17 C 0.037 3.963 18 N -0.903 5.903 19 Si 1.058 2.942 20 H -0.287 1.287 21 H -0.285 1.285 22 H -0.286 1.286 23 C 0.006 3.994 24 C -0.117 4.117 25 C -0.227 4.227 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.393 0.607 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.028 0.972 38 H 0.016 0.984 39 H 0.272 0.728 40 H 0.006 0.994 41 H 0.036 0.964 42 H 0.050 0.950 43 H 0.035 0.965 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.961 17.667 -5.390 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.018 4.018 3 C -0.216 4.216 4 C -0.002 4.002 5 C -0.142 4.142 6 C -0.126 4.126 7 C -0.164 4.164 8 C -0.103 4.103 9 C -0.112 4.112 10 C 0.140 3.860 11 N -0.354 5.354 12 C 0.057 3.943 13 H 0.089 0.911 14 C -0.154 4.154 15 C -0.039 4.039 16 C -0.591 4.591 17 C -0.168 4.168 18 N -0.538 5.538 19 Si 0.887 3.113 20 H -0.213 1.213 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.032 4.032 24 C -0.156 4.156 25 C -0.252 4.252 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.034 0.966 39 H 0.084 0.916 40 H 0.024 0.976 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.518 15.933 -5.191 17.123 hybrid contribution -0.164 1.544 -0.125 1.557 sum 3.354 17.477 -5.315 18.573 Atomic orbital electron populations 1.20852 0.91659 1.02659 1.02200 1.19283 0.95555 0.92453 0.94465 1.20410 0.92359 0.97385 1.11465 1.17797 0.93453 0.91894 0.97045 1.20939 0.94212 0.96878 1.02178 1.20774 0.94444 0.97746 0.99646 1.20645 0.99651 0.92386 1.03746 1.20801 0.93048 0.98126 0.98366 1.17717 0.93199 0.91940 1.08319 1.17833 0.91763 0.85120 0.91242 1.45287 1.08321 1.03137 1.78634 1.21010 0.94533 0.81140 0.97635 0.91085 1.21888 0.98972 0.96856 0.97669 1.19507 0.94725 0.92081 0.97576 1.21004 1.38240 0.98211 1.01618 1.25738 0.98481 0.97133 0.95482 1.70801 1.23781 1.39115 1.20062 0.83679 0.76088 0.76183 0.75378 1.21278 1.21180 1.21235 1.19462 0.93964 0.92193 0.97615 1.22081 1.00343 0.98463 0.94695 1.20413 0.92018 0.98168 1.14602 0.91187 0.91395 0.91730 0.86551 0.85999 0.86515 0.86482 0.86459 0.77199 0.92603 0.94415 0.95336 0.96613 0.91557 0.97597 0.94525 0.93075 0.94670 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.98 36.01 0.36 -0.96 16 2 C -0.02 -0.24 5.84 -105.03 -0.61 -0.85 16 3 C -0.20 -2.65 9.35 -39.46 -0.37 -3.02 16 4 C 0.00 -0.02 5.74 -106.85 -0.61 -0.63 16 5 C -0.12 -1.47 9.77 -39.47 -0.39 -1.86 16 6 C -0.11 -1.19 9.95 -39.94 -0.40 -1.58 16 7 C -0.15 -1.68 9.95 -39.91 -0.40 -2.08 16 8 C -0.08 -1.12 9.50 -39.53 -0.38 -1.49 16 9 C -0.11 -1.64 5.75 -106.69 -0.61 -2.25 16 10 C 0.25 4.01 6.64 -83.49 -0.55 3.45 16 11 N -0.73 -11.76 5.17 -51.96 -0.27 -12.03 16 12 C 0.16 2.97 2.05 -67.97 -0.14 2.83 16 13 H 0.07 1.36 6.48 -51.93 -0.34 1.03 16 14 C -0.12 -2.22 5.40 -26.63 -0.14 -2.36 16 15 C 0.00 -0.01 5.65 -27.49 -0.16 -0.17 16 16 C -0.57 -14.60 5.48 -98.92 -0.54 -15.14 16 17 C 0.04 1.01 5.45 -17.82 -0.10 0.92 16 18 N -0.90 -26.22 13.57 55.43 0.75 -25.47 16 19 Si 1.06 24.29 27.20 -169.99 -4.62 19.66 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 23 C 0.01 0.14 5.81 -27.26 -0.16 -0.02 16 24 C -0.12 -2.42 5.44 -26.41 -0.14 -2.57 16 25 C -0.23 -3.65 8.44 -39.38 -0.33 -3.98 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 28 H 0.06 0.62 8.07 -51.93 -0.42 0.20 16 29 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.12 1.37 6.44 -52.49 -0.34 1.04 16 34 H 0.39 5.69 6.71 -40.82 -0.27 5.42 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.03 0.62 5.16 -51.93 -0.27 0.35 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.27 7.86 6.65 -40.82 -0.27 7.59 16 40 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 41 H 0.04 0.94 6.18 -51.93 -0.32 0.62 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.03 0.70 7.74 -51.93 -0.40 0.30 16 44 H 0.13 2.10 6.11 -52.48 -0.32 1.78 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -28.38 342.14 -11.05 -39.43 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.39 Total: 5.02 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -5.67 Total: -31.78 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.48 Total: -37.49 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -4.62 Total: 19.66 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.38 -11.05 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.107 kcal (2) G-P(sol) polarization free energy of solvation -28.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds