Wall clock time and date at job start Fri Apr 10 2020 20:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36174 * 119.45362 * 2 1 4 4 C 1.40521 * 119.95817 * 180.02562 * 3 2 1 5 5 C 1.40580 * 121.19485 * 179.97438 * 4 3 2 6 6 C 1.36096 * 119.66273 * 180.02562 * 5 4 3 7 7 C 1.39353 * 120.97034 * 359.97438 * 6 5 4 8 8 C 1.36158 * 120.96267 * 0.02562 * 7 6 5 9 9 C 1.40359 * 119.66971 * 359.96022 * 8 7 6 10 10 C 1.41142 * 121.25799 * 180.02562 * 9 8 7 11 11 N 1.39317 * 120.30632 * 0.02562 * 10 9 8 12 12 C 1.46497 * 119.99985 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.41793 * 35.14334 * 12 11 10 14 14 C 1.52963 * 109.41416 * 155.00273 * 12 11 10 15 15 C 1.53227 * 109.40733 * 183.70714 * 14 12 11 16 16 C 1.51269 * 108.53442 * 305.37116 * 15 14 12 17 17 C 1.37878 * 120.84795 * 231.32244 * 16 15 14 18 18 N 1.31516 * 120.00070 * 190.01123 * 17 16 15 19 19 Si 1.86802 * 120.00130 * 10.01424 * 17 16 15 20 20 H 1.48498 * 109.46961 * 179.97438 * 19 17 16 21 21 H 1.48501 * 109.46877 * 60.00007 * 19 17 16 22 22 H 1.48496 * 109.46825 * 299.99886 * 19 17 16 23 23 C 1.51265 * 118.30126 * 51.60093 * 16 15 14 24 24 C 1.52963 * 109.41835 * 275.35458 * 12 11 10 25 25 C 1.37886 * 119.39024 * 180.29488 * 10 9 8 26 26 H 1.09005 * 109.47186 * 89.99924 * 1 2 3 27 27 H 1.08996 * 109.47264 * 209.99665 * 1 2 3 28 28 H 1.08999 * 109.47260 * 330.00522 * 1 2 3 29 29 H 1.08001 * 120.02406 * 0.04627 * 3 2 1 30 30 H 1.08000 * 120.16838 * 0.02562 * 5 4 3 31 31 H 1.07995 * 119.51223 * 180.02562 * 6 5 4 32 32 H 1.07998 * 119.51617 * 179.97438 * 7 6 5 33 33 H 1.07994 * 120.16380 * 179.97438 * 8 7 6 34 34 H 0.96996 * 119.99968 * 0.02562 * 11 10 9 35 35 H 1.09000 * 109.48353 * 63.72212 * 14 12 11 36 36 H 1.09005 * 109.48050 * 303.68359 * 14 12 11 37 37 H 1.09000 * 109.62687 * 185.65389 * 15 14 12 38 38 H 1.09003 * 109.78432 * 65.17783 * 15 14 12 39 39 H 0.97003 * 119.99606 * 5.66673 * 18 17 16 40 40 H 1.09000 * 109.62661 * 68.11553 * 23 16 15 41 41 H 1.09004 * 109.62903 * 188.68873 * 23 16 15 42 42 H 1.09000 * 109.47638 * 296.27865 * 24 12 11 43 43 H 1.09000 * 109.47707 * 56.29916 * 24 12 11 44 44 H 1.08007 * 119.62424 * 179.70264 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1766 1.1857 0.0000 4 6 3.5818 1.1981 -0.0005 5 6 4.2993 2.4070 -0.0011 6 6 5.6600 2.3826 -0.0021 7 6 6.3556 1.1751 -0.0021 8 6 5.6935 -0.0147 -0.0016 9 6 4.2900 -0.0288 -0.0002 10 6 3.5698 -1.2426 0.0009 11 7 4.2454 -2.4610 0.0012 12 6 3.4911 -3.7168 0.0029 13 1 2.5833 -3.5951 -0.5880 14 6 4.3496 -4.8264 -0.6067 15 6 3.5289 -6.1176 -0.6899 16 6 2.9882 -6.4333 0.6871 17 6 3.1650 -7.6807 1.2472 18 7 2.5260 -8.0027 2.3507 19 14 4.3120 -8.9136 0.4386 20 1 4.3273 -10.1692 1.2313 21 1 5.6842 -8.3488 0.3804 22 1 3.8368 -9.2026 -0.9383 23 6 2.2431 -5.3474 1.4313 24 6 3.1153 -4.0824 1.4399 25 6 2.1913 -1.2115 -0.0039 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.6281 2.1161 0.0008 30 1 3.7734 3.3503 -0.0007 31 1 6.2088 3.3127 -0.0021 32 1 7.4355 1.1831 -0.0034 33 1 6.2455 -0.9429 -0.0020 34 1 5.2152 -2.4777 0.0010 35 1 5.2266 -4.9927 0.0188 36 1 4.6670 -4.5323 -1.6072 37 1 4.1653 -6.9347 -1.0296 38 1 2.7012 -5.9844 -1.3866 39 1 1.8690 -7.3953 2.7254 40 1 1.2984 -5.1409 0.9283 41 1 2.0531 -5.6694 2.4552 42 1 4.0216 -4.2663 2.0170 43 1 2.5582 -3.2608 1.8900 44 1 1.6364 -2.1381 -0.0080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167846292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:18:57 Heat of formation + Delta-G solvation = 3.872137 kcal Electronic energy + Delta-G solvation = -23342.282803 eV Core-core repulsion = 20221.980714 eV Total energy + Delta-G solvation = -3120.302089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.47533 -39.40796 -37.62099 -36.34422 -34.14388 -32.35996 -32.02717 -31.49641 -29.86916 -28.36608 -27.36538 -24.57601 -23.75031 -23.20588 -22.95432 -21.77058 -21.26903 -18.75431 -18.21912 -18.08243 -17.32961 -16.49950 -16.19674 -15.70261 -15.53323 -15.15764 -15.08789 -14.83452 -14.74735 -14.25902 -14.13019 -13.94450 -13.65304 -13.53298 -13.26097 -13.04882 -12.97751 -12.67278 -12.54253 -12.38667 -12.09787 -11.98983 -11.94095 -11.78295 -11.63384 -11.40237 -11.30962 -11.03131 -10.55919 -10.32722 -9.76652 -9.38748 -8.61323 -7.94155 -6.18591 -0.17723 0.14919 1.26527 1.51311 1.56836 1.76237 2.17498 2.39053 2.55370 3.12992 3.26094 3.79605 3.80683 3.95682 4.03997 4.10619 4.14083 4.32804 4.37096 4.44153 4.52876 4.58241 4.59629 4.65828 4.80115 4.83129 4.85854 4.88852 4.92844 4.98469 5.03670 5.12935 5.14529 5.17983 5.19627 5.23274 5.30730 5.44521 5.46147 5.61548 5.62368 5.66813 5.81535 5.95580 6.01023 6.15579 6.23046 6.38676 6.70588 6.80599 7.51325 8.75648 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.021837 B = 0.003901 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.915078 B = 7176.535754 C = 8043.073816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.035 4.035 3 C -0.190 4.190 4 C -0.024 4.024 5 C -0.127 4.127 6 C -0.107 4.107 7 C -0.139 4.139 8 C -0.107 4.107 9 C -0.125 4.125 10 C 0.229 3.771 11 N -0.728 5.728 12 C 0.176 3.824 13 H 0.063 0.937 14 C -0.108 4.108 15 C -0.006 4.006 16 C -0.577 4.577 17 C -0.017 4.017 18 N -0.942 5.942 19 Si 1.095 2.905 20 H -0.297 1.297 21 H -0.264 1.264 22 H -0.265 1.265 23 C 0.002 3.998 24 C -0.103 4.103 25 C -0.245 4.245 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.125 0.875 34 H 0.401 0.599 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.037 0.963 38 H 0.017 0.983 39 H 0.258 0.742 40 H -0.001 1.001 41 H 0.009 0.991 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.837 20.508 -7.052 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.036 4.036 3 C -0.210 4.210 4 C -0.024 4.024 5 C -0.145 4.145 6 C -0.125 4.125 7 C -0.157 4.157 8 C -0.125 4.125 9 C -0.127 4.127 10 C 0.123 3.877 11 N -0.354 5.354 12 C 0.071 3.929 13 H 0.081 0.919 14 C -0.146 4.146 15 C -0.044 4.044 16 C -0.596 4.596 17 C -0.215 4.215 18 N -0.580 5.580 19 Si 0.918 3.082 20 H -0.224 1.224 21 H -0.189 1.189 22 H -0.191 1.191 23 C -0.036 4.036 24 C -0.142 4.142 25 C -0.270 4.270 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.160 0.840 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.143 0.857 34 H 0.238 0.762 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.018 0.982 41 H 0.028 0.972 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.398 18.826 -6.874 20.756 hybrid contribution -0.768 0.868 0.401 1.227 sum 4.630 19.694 -6.473 21.241 Atomic orbital electron populations 1.20866 0.89963 1.03180 1.03018 1.19555 0.96964 0.92095 0.94943 1.20754 0.92514 0.98042 1.09643 1.18167 0.94038 0.92618 0.97587 1.21276 0.94863 0.96967 1.01431 1.21209 0.94387 0.98907 0.97962 1.21057 1.01137 0.91994 1.01525 1.20988 0.92456 0.99427 0.99627 1.17931 0.94243 0.91754 1.08795 1.17991 0.91921 0.85469 0.92342 1.44923 1.08437 1.02280 1.79790 1.20602 0.94573 0.82328 0.95379 0.91903 1.21750 0.98267 0.95279 0.99350 1.19545 0.95358 0.94141 0.95406 1.21566 1.36952 0.97990 1.03045 1.27022 0.99521 0.99441 0.95515 1.70911 1.25456 1.39429 1.22161 0.83216 0.75631 0.73983 0.75376 1.22390 1.18927 1.19059 1.19456 0.94424 0.93834 0.95895 1.21875 0.98928 0.96695 0.96688 1.20485 0.92348 0.98400 1.15792 0.90158 0.92294 0.89776 0.84023 0.83424 0.83226 0.83879 0.85707 0.76227 0.92610 0.91597 0.94429 0.96485 0.93124 0.98235 0.97235 0.94282 0.94480 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 9.98 71.24 0.71 -1.76 16 2 C -0.03 -0.96 5.84 -20.13 -0.12 -1.08 16 3 C -0.19 -4.77 9.35 22.35 0.21 -4.57 16 4 C -0.02 -0.62 5.74 -21.31 -0.12 -0.74 16 5 C -0.13 -2.59 9.77 22.34 0.22 -2.37 16 6 C -0.11 -1.91 9.95 22.04 0.22 -1.69 16 7 C -0.14 -2.73 9.95 22.05 0.22 -2.51 16 8 C -0.11 -2.60 9.50 22.30 0.21 -2.39 16 9 C -0.12 -3.61 5.75 -21.20 -0.12 -3.73 16 10 C 0.23 7.36 6.64 38.58 0.26 7.62 16 11 N -0.73 -23.15 5.17 -318.31 -1.65 -24.79 16 12 C 0.18 6.51 2.05 44.97 0.09 6.60 16 13 H 0.06 2.45 6.48 -2.39 -0.02 2.43 16 14 C -0.11 -4.00 5.40 30.66 0.17 -3.83 16 15 C -0.01 -0.27 5.65 30.10 0.17 -0.10 16 16 C -0.58 -29.95 5.48 -16.17 -0.09 -30.04 16 17 C -0.02 -0.92 5.45 84.65 0.46 -0.46 16 18 N -0.94 -57.02 13.57 21.45 0.29 -56.73 16 19 Si 1.09 48.73 27.20 68.60 1.87 50.60 16 20 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 23 C 0.00 0.11 5.81 30.25 0.18 0.28 16 24 C -0.10 -4.39 5.44 30.80 0.17 -4.22 16 25 C -0.25 -8.02 8.44 22.40 0.19 -7.83 16 26 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.06 1.36 8.08 -2.39 -0.02 1.34 16 28 H 0.08 1.46 8.07 -2.39 -0.02 1.44 16 29 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 31 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.13 2.72 6.44 -2.91 -0.02 2.71 16 34 H 0.40 11.22 6.71 -92.71 -0.62 10.60 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.04 1.56 5.16 -2.39 -0.01 1.55 16 38 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.26 15.83 6.65 -92.71 -0.62 15.21 16 40 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.01 0.50 6.18 -2.38 -0.01 0.49 16 42 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.04 1.54 7.74 -2.39 -0.02 1.52 16 44 H 0.11 3.77 6.11 -2.91 -0.02 3.76 16 Total: -1.00 -63.41 342.14 4.06 -59.34 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.54 Total: 24.42 kcal Atomic # 6 Polarization: -55.85 SS G_CDS: 3.02 Total: -52.83 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -1.36 Total: -81.53 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 1.87 Total: 50.60 kcal Total: -63.41 4.06 -59.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.216 kcal (2) G-P(sol) polarization free energy of solvation -63.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds