Wall clock time and date at job start Fri Apr 10 2020 20:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.46873 * 2 1 4 4 N 1.30619 * 125.41882 * 89.97800 * 3 2 1 5 5 C 1.33696 * 108.99080 * 179.78272 * 4 3 2 6 6 C 1.50704 * 126.27397 * 180.25382 * 5 4 3 7 7 C 1.36343 * 107.45557 * 0.37465 * 5 4 3 8 8 C 1.46718 * 126.64585 * 179.89814 * 7 5 4 9 9 O 1.21689 * 119.99536 * 359.70278 * 8 7 5 10 10 N 1.34773 * 120.00416 * 179.71317 * 8 7 5 11 11 C 1.46490 * 120.00384 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47559 * 179.97438 * 11 10 8 13 13 H 1.09008 * 109.46613 * 54.99525 * 12 11 10 14 14 C 1.53001 * 109.47108 * 295.00069 * 12 11 10 15 15 C 1.52996 * 109.47530 * 174.99686 * 12 11 10 16 16 N 1.46498 * 109.47059 * 184.99929 * 15 12 11 17 17 C 1.36943 * 119.99752 * 179.72430 * 16 15 12 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47290 * 120.00044 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00049 * 21 19 17 25 25 O 1.33663 * 125.42542 * 269.99465 * 3 2 1 26 26 H 1.09001 * 109.47300 * 60.00077 * 1 2 3 27 27 H 1.09006 * 109.47225 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47444 * 300.00121 * 1 2 3 29 29 H 1.09007 * 109.47310 * 240.00266 * 2 1 3 30 30 H 1.08992 * 109.47460 * 120.00078 * 2 1 3 31 31 H 1.08999 * 109.47172 * 270.14666 * 6 5 4 32 32 H 1.09003 * 109.46538 * 30.13871 * 6 5 4 33 33 H 1.08989 * 109.47427 * 150.13934 * 6 5 4 34 34 H 0.97002 * 119.99300 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.47374 * 59.99359 * 11 10 8 36 36 H 1.09002 * 109.47263 * 299.99603 * 11 10 8 37 37 H 1.09001 * 109.47309 * 179.97438 * 14 12 11 38 38 H 1.08995 * 109.46988 * 299.99895 * 14 12 11 39 39 H 1.09001 * 109.46786 * 59.99727 * 14 12 11 40 40 H 1.09004 * 109.47066 * 65.00196 * 15 12 11 41 41 H 1.08994 * 109.46974 * 305.00344 * 15 12 11 42 42 H 0.97001 * 120.00384 * 0.02562 * 16 15 12 43 43 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2842 2.1347 1.0645 5 6 2.7162 3.3421 0.6864 6 6 3.1221 4.4701 1.5996 7 6 2.7198 3.3668 -0.6768 8 6 3.1179 4.4911 -1.5313 9 8 3.4872 5.5361 -1.0288 10 7 3.0744 4.3667 -2.8725 11 6 3.4714 5.4894 -3.7257 12 6 3.3308 5.0879 -5.1954 13 1 2.3150 4.7388 -5.3810 14 6 4.3217 3.9668 -5.5148 15 6 3.6251 6.2974 -6.0849 16 7 3.3749 5.9463 -7.4850 17 6 3.5661 6.8788 -8.4695 18 1 3.9056 7.8718 -8.2141 19 6 3.3235 6.5478 -9.7956 20 7 2.9093 5.3378 -10.1066 21 14 3.5850 7.8196 -11.1385 22 1 4.0505 9.0922 -10.5312 23 1 4.6071 7.3256 -12.0959 24 1 2.3058 8.0518 -11.8561 25 8 2.2906 2.1513 -1.0892 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.2521 5.0873 1.8236 32 1 3.5251 4.0605 2.5259 33 1 3.8827 5.0782 1.1100 34 1 2.7803 3.5335 -3.2730 35 1 4.5085 5.7537 -3.5192 36 1 2.8302 6.3465 -3.5199 37 1 4.2213 3.6804 -6.5617 38 1 5.3375 4.3158 -5.3291 39 1 4.1120 3.1051 -4.8811 40 1 4.6678 6.5917 -5.9649 41 1 2.9783 7.1261 -5.7970 42 1 3.0696 5.0546 -7.7143 43 1 2.7401 5.1064 -11.0333 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753637320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:21 Heat of formation + Delta-G solvation = -23.840705 kcal Electronic energy + Delta-G solvation = -23161.130139 eV Core-core repulsion = 19628.777067 eV Total energy + Delta-G solvation = -3532.353072 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.74150 -39.73153 -36.96885 -35.68535 -34.63800 -34.40116 -32.56409 -31.09405 -30.11260 -28.25459 -26.53411 -25.60509 -24.79620 -22.73167 -21.85904 -21.73480 -20.76620 -20.02744 -18.33379 -17.30300 -17.02756 -16.28116 -16.17289 -15.45249 -15.14890 -14.76695 -14.51347 -14.30377 -14.07284 -13.68747 -13.51773 -13.38188 -13.09139 -13.05940 -12.68289 -12.54265 -12.36950 -12.18101 -12.09510 -11.71592 -11.27414 -11.13946 -11.09404 -10.95361 -10.76022 -10.62714 -10.49733 -10.26801 -9.99903 -9.70691 -9.35446 -8.96605 -8.90144 -6.94502 -5.79082 -3.07608 0.54127 2.07371 2.09853 2.89478 2.98627 3.42321 3.48262 3.50336 3.51795 4.37526 4.40486 4.57227 4.60952 4.63733 4.80769 4.97927 5.15251 5.18069 5.21769 5.28691 5.33076 5.40021 5.44317 5.55686 5.60900 5.62405 5.71436 5.75100 5.89323 5.90657 6.02235 6.07030 6.18115 6.31235 6.37388 6.61594 6.73278 6.82538 7.14469 7.37528 7.69248 7.87760 8.40020 9.51405 10.08310 10.42988 11.43997 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.025031 B = 0.002557 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.341095 B =10946.840493 C =11807.360172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.031 4.031 3 C 0.222 3.778 4 N -0.488 5.488 5 C 0.080 3.920 6 C -0.081 4.081 7 C -0.118 4.118 8 C 0.607 3.393 9 O -0.516 6.516 10 N -0.711 5.711 11 C 0.126 3.874 12 C -0.111 4.111 13 H 0.077 0.923 14 C -0.142 4.142 15 C 0.161 3.839 16 N -0.731 5.731 17 C -0.238 4.238 18 H 0.071 0.929 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 O -0.187 6.187 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.405 0.595 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.041 0.959 40 H 0.023 0.977 41 H 0.022 0.978 42 H 0.384 0.616 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 -11.202 22.896 25.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.069 4.069 3 C 0.016 3.984 4 N -0.218 5.218 5 C -0.044 4.044 6 C -0.138 4.138 7 C -0.173 4.173 8 C 0.392 3.608 9 O -0.394 6.394 10 N -0.361 5.361 11 C 0.002 3.998 12 C -0.130 4.130 13 H 0.096 0.904 14 C -0.200 4.200 15 C 0.033 3.967 16 N -0.376 5.376 17 C -0.369 4.369 18 H 0.089 0.911 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 O -0.074 6.074 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.240 0.760 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.041 0.959 41 H 0.040 0.960 42 H 0.218 0.782 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.281 -10.508 23.678 26.005 hybrid contribution -0.089 0.105 -1.836 1.841 sum -2.369 -10.402 21.842 24.308 Atomic orbital electron populations 1.21798 0.92602 1.03344 1.03222 1.20207 0.97215 0.83749 1.05689 1.26598 0.96545 0.96615 0.78620 1.70347 1.17826 1.03715 1.29914 1.22084 0.97050 0.93947 0.91293 1.20396 1.02891 0.93084 0.97401 1.22962 1.12826 0.86269 0.95252 1.16291 0.78308 0.84503 0.81736 1.90864 1.48025 1.26601 1.73888 1.45982 1.66667 1.18294 1.05188 1.21543 1.01078 0.88043 0.89098 1.21571 1.00750 0.98256 0.92469 0.90427 1.21802 0.98848 0.96794 1.02532 1.20567 0.97787 0.93013 0.85339 1.42348 1.81273 1.14066 0.99882 1.19284 1.37372 0.93513 0.86759 0.91068 1.24744 1.02285 0.96803 0.97248 1.69669 1.52520 1.18609 1.17512 0.86104 0.77296 0.80549 0.82178 1.20525 1.21868 1.21868 1.84446 1.63555 1.22054 1.37333 0.91868 0.90528 0.91647 0.88347 0.87241 0.89962 0.90493 0.88545 0.75961 0.90781 0.90777 0.91011 0.92702 0.93971 0.95893 0.96046 0.78202 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.16 0.37 -0.39 16 2 C -0.03 -0.17 6.56 -27.88 -0.18 -0.35 16 3 C 0.22 2.22 7.57 -12.79 -0.10 2.12 16 4 N -0.49 -5.76 11.26 -7.07 -0.08 -5.84 16 5 C 0.08 0.99 7.16 -82.46 -0.59 0.40 16 6 C -0.08 -0.82 9.87 36.01 0.36 -0.47 16 7 C -0.12 -1.50 7.18 -36.84 -0.26 -1.76 16 8 C 0.61 8.25 7.79 -12.84 -0.10 8.15 16 9 O -0.52 -8.07 14.80 5.20 0.08 -8.00 16 10 N -0.71 -8.80 5.28 -61.61 -0.33 -9.12 16 11 C 0.13 1.69 5.06 -4.05 -0.02 1.67 16 12 C -0.11 -1.69 2.46 -90.62 -0.22 -1.91 16 13 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 14 C -0.14 -2.09 8.94 37.16 0.33 -1.76 16 15 C 0.16 3.14 5.65 -4.04 -0.02 3.12 16 16 N -0.73 -18.16 5.33 -59.91 -0.32 -18.48 16 17 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 19 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 21 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 O -0.19 -2.12 10.57 4.43 0.05 -2.08 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.10 0.40 8.14 -51.92 -0.42 -0.03 16 30 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 1.06 6.47 -51.94 -0.34 0.73 16 34 H 0.41 4.42 7.45 -40.82 -0.30 4.12 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.23 7.18 -51.93 -0.37 0.86 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.04 0.51 7.18 -51.93 -0.37 0.14 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -32.83 361.92 -6.85 -39.68 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.71 Total: 6.84 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.69 Total: 1.51 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.00 Total: -60.76 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.12 Total: -10.07 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.83 -6.85 -39.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753637320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.836 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds