Wall clock time and date at job start Fri Apr 10 2020 20:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35448 * 126.77219 * 2 1 4 4 C 1.41385 * 103.98544 * 180.10150 * 3 2 1 5 5 C 1.50696 * 126.80242 * 179.89200 * 4 3 2 6 6 C 1.52999 * 109.47053 * 124.71076 * 5 4 3 7 7 C 1.50706 * 109.46924 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00120 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00079 * 179.97438 * 7 6 5 10 10 C 1.46487 * 120.00479 * 180.02562 * 9 7 6 11 11 H 1.09008 * 109.47067 * 324.99891 * 10 9 7 12 12 C 1.52999 * 109.47262 * 84.99674 * 10 9 7 13 13 C 1.53002 * 109.47700 * 204.99936 * 10 9 7 14 14 N 1.46500 * 109.46618 * 54.99760 * 13 10 9 15 15 C 1.46503 * 120.00132 * 270.00133 * 14 13 10 16 16 C 1.36939 * 120.00190 * 90.00430 * 14 13 10 17 17 H 1.08004 * 119.99754 * 340.44548 * 16 14 13 18 18 C 1.38805 * 120.00251 * 160.16277 * 16 14 13 19 19 N 1.31617 * 120.00050 * 344.50867 * 18 16 14 20 20 Si 1.86801 * 120.00021 * 164.49887 * 18 16 14 21 21 H 1.48502 * 109.46962 * 90.00562 * 20 18 16 22 22 H 1.48498 * 109.47526 * 210.00421 * 20 18 16 23 23 H 1.48503 * 109.47416 * 330.00554 * 20 18 16 24 24 N 1.30177 * 106.39057 * 359.63035 * 4 3 2 25 25 O 1.20918 * 111.60519 * 0.23851 * 24 4 3 26 26 H 1.09004 * 109.47206 * 180.29957 * 1 2 3 27 27 H 1.09002 * 109.47173 * 300.29368 * 1 2 3 28 28 H 1.08997 * 109.48003 * 60.29460 * 1 2 3 29 29 H 1.07997 * 128.01271 * 359.97212 * 3 2 1 30 30 H 1.08996 * 109.47434 * 4.70935 * 5 4 3 31 31 H 1.09003 * 109.46817 * 244.71094 * 5 4 3 32 32 H 1.08998 * 109.47105 * 60.00447 * 6 5 4 33 33 H 1.08994 * 109.47114 * 299.99614 * 6 5 4 34 34 H 0.97004 * 119.99522 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47401 * 180.02562 * 12 10 9 36 36 H 1.08995 * 109.47378 * 300.00241 * 12 10 9 37 37 H 1.08998 * 109.46878 * 60.00623 * 12 10 9 38 38 H 1.09001 * 109.46919 * 295.00489 * 13 10 9 39 39 H 1.08991 * 109.47393 * 174.99602 * 13 10 9 40 40 H 1.09001 * 109.47084 * 264.86777 * 15 14 13 41 41 H 1.08995 * 109.46838 * 24.86829 * 15 14 13 42 42 H 1.08999 * 109.46901 * 144.87342 * 15 14 13 43 43 H 0.97007 * 119.99828 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3178 1.0850 0.0000 4 6 3.6213 0.5374 -0.0024 5 6 4.9209 1.3002 -0.0057 6 6 5.7791 0.8508 1.1785 7 6 7.0791 1.6132 1.1748 8 8 7.2974 2.4354 0.3104 9 7 7.9986 1.3821 2.1327 10 6 9.2620 2.1235 2.1295 11 1 9.5760 2.3019 1.1010 12 6 9.0691 3.4629 2.8434 13 6 10.3338 1.3082 2.8558 14 7 10.4342 -0.0197 2.2453 15 6 9.6067 -1.1203 2.7454 16 6 11.3017 -0.2323 1.2073 17 1 11.6714 0.6041 0.6326 18 6 11.7106 -1.5221 0.8975 19 7 11.5231 -2.4973 1.7613 20 14 12.5265 -1.8739 -0.7457 21 1 13.9962 -1.7061 -0.6145 22 1 12.2226 -3.2668 -1.1612 23 1 12.0096 -0.9286 -1.7676 24 7 3.4763 -0.7563 0.0045 25 8 2.3095 -1.0735 0.0059 26 1 -0.3634 -1.0277 0.0054 27 1 -0.3634 0.5184 0.8874 28 1 -0.3635 0.5092 -0.8925 29 1 2.0344 2.1271 -0.0004 30 1 4.7161 2.3674 0.0783 31 1 5.4545 1.1048 -0.9360 32 1 5.9841 -0.2165 1.0943 33 1 5.2456 1.0461 2.1086 34 1 7.8235 0.7252 2.8247 35 1 10.0090 4.0149 2.8407 36 1 8.3056 4.0438 2.3260 37 1 8.7552 3.2845 3.8719 38 1 10.0623 1.2055 3.9064 39 1 11.2939 1.8180 2.7766 40 1 10.1744 -1.7002 3.4731 41 1 8.7129 -0.7160 3.2205 42 1 9.3171 -1.7637 1.9145 43 1 11.8085 -3.3987 1.5446 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:58 Heat of formation + Delta-G solvation = 35.879248 kcal Electronic energy + Delta-G solvation = -23756.458865 eV Core-core repulsion = 20226.695445 eV Total energy + Delta-G solvation = -3529.763420 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.03595 -39.44439 -36.56431 -35.29690 -34.04669 -33.71902 -31.84599 -31.00313 -30.06323 -28.04675 -26.19450 -25.70974 -25.29120 -23.15722 -21.87685 -20.47970 -19.99049 -19.58847 -17.76215 -17.43099 -16.79763 -16.61151 -15.57428 -15.27825 -14.92509 -14.68378 -14.03036 -13.87955 -13.71170 -13.60029 -13.34962 -13.26683 -12.89615 -12.82104 -12.38258 -12.21551 -12.08166 -11.99863 -11.56331 -11.39812 -11.30375 -10.92893 -10.80236 -10.63440 -10.59966 -10.17639 -10.12326 -10.00097 -9.83525 -9.50501 -9.34761 -8.63110 -8.41677 -6.76563 -5.71699 -3.14558 1.32363 2.10839 2.96255 3.07677 3.40654 3.47737 3.51667 3.63405 4.11441 4.29237 4.52834 4.81863 4.89732 4.98664 5.02374 5.09239 5.16407 5.30072 5.34490 5.45107 5.48045 5.53859 5.63953 5.66612 5.81682 5.86545 5.95235 5.99523 6.09140 6.10826 6.19363 6.44980 6.54024 6.61694 6.80989 7.10441 7.33871 7.67599 7.82445 8.01802 8.19465 8.38244 8.69973 9.23878 9.87419 10.33902 11.33493 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015480 B = 0.003519 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.395534 B = 7955.485547 C = 8966.954823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.233 4.233 4 C 0.024 3.976 5 C -0.024 4.024 6 C -0.136 4.136 7 C 0.515 3.485 8 O -0.554 6.554 9 N -0.703 5.703 10 C 0.116 3.884 11 H 0.084 0.916 12 C -0.157 4.157 13 C 0.143 3.857 14 N -0.599 5.599 15 C 0.168 3.832 16 C -0.252 4.252 17 H 0.068 0.932 18 C 0.001 3.999 19 N -0.908 5.908 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 N -0.360 5.360 25 O 0.099 5.901 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.170 0.830 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.397 0.603 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.030 0.970 41 H -0.008 1.008 42 H 0.043 0.957 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.010 7.900 1.493 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 C -0.254 4.254 4 C -0.135 4.135 5 C -0.062 4.062 6 C -0.177 4.177 7 C 0.300 3.700 8 O -0.433 6.433 9 N -0.354 5.354 10 C 0.008 3.992 11 H 0.102 0.898 12 C -0.217 4.217 13 C 0.014 3.986 14 N -0.321 5.321 15 C 0.023 3.977 16 C -0.381 4.381 17 H 0.086 0.914 18 C -0.197 4.197 19 N -0.554 5.554 20 Si 0.732 3.268 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 N -0.064 5.064 25 O 0.032 5.968 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.188 0.812 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.233 0.767 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.010 0.990 42 H 0.062 0.938 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.921 7.236 0.881 21.213 hybrid contribution 0.056 0.105 -0.558 0.571 sum -19.866 7.341 0.323 21.181 Atomic orbital electron populations 1.20317 0.84173 1.04611 1.03967 1.24507 0.96379 0.86417 1.02965 1.22428 0.91386 1.00982 1.10604 1.23670 0.97455 0.90005 1.02341 1.19720 0.88230 0.98590 0.99701 1.21597 0.94157 1.02170 0.99788 1.20386 0.85336 0.82837 0.81393 1.90654 1.79483 1.35843 1.37279 1.46039 1.17596 1.42216 1.29543 1.21908 0.84481 0.90733 1.02054 0.89819 1.22118 1.01721 0.97728 1.00085 1.21047 0.95939 0.87441 0.94132 1.43846 1.45000 1.04657 1.38615 1.20815 0.89525 0.89418 0.97929 1.19162 1.20521 0.92703 1.05756 0.91397 1.24914 0.99743 0.96711 0.98336 1.70081 1.51211 1.00714 1.33371 0.86301 0.79074 0.77334 0.84134 1.21474 1.21603 1.20549 1.73890 0.96584 1.16426 1.19485 1.84850 1.11377 1.33156 1.67416 0.89940 0.89261 0.89290 0.81231 0.88924 0.88955 0.88348 0.89279 0.76738 0.91992 0.92951 0.93107 0.94159 0.91958 0.95203 0.98968 0.93829 0.93813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.45 36.00 0.38 0.05 16 2 C -0.04 -0.35 7.49 -35.30 -0.26 -0.62 16 3 C -0.23 -2.28 11.05 -39.38 -0.44 -2.71 16 4 C 0.02 0.31 6.59 -82.10 -0.54 -0.24 16 5 C -0.02 -0.32 5.10 -27.89 -0.14 -0.46 16 6 C -0.14 -1.88 5.67 -27.88 -0.16 -2.04 16 7 C 0.51 8.84 7.79 -10.98 -0.09 8.75 16 8 O -0.55 -11.22 15.65 5.55 0.09 -11.13 16 9 N -0.70 -11.93 4.52 -53.81 -0.24 -12.17 16 10 C 0.12 2.08 2.88 -67.94 -0.20 1.88 16 11 H 0.08 1.78 7.58 -51.92 -0.39 1.39 16 12 C -0.16 -2.29 9.48 37.16 0.35 -1.94 16 13 C 0.14 2.81 5.29 -4.04 -0.02 2.79 16 14 N -0.60 -14.69 2.78 -181.12 -0.50 -15.19 16 15 C 0.17 3.99 8.52 59.85 0.51 4.50 16 16 C -0.25 -6.98 9.67 -15.06 -0.15 -7.12 16 17 H 0.07 1.87 7.88 -52.48 -0.41 1.46 16 18 C 0.00 0.02 5.06 -17.43 -0.09 -0.06 16 19 N -0.91 -26.65 10.67 55.49 0.59 -26.06 16 20 Si 0.90 22.52 29.58 -169.99 -5.03 17.49 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 N -0.36 -5.16 12.06 33.42 0.40 -4.76 16 25 O 0.10 1.21 11.20 17.20 0.19 1.41 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.09 1.10 8.09 -51.93 -0.42 0.68 16 31 H 0.09 1.35 8.10 -51.93 -0.42 0.93 16 32 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.40 6.22 6.21 -40.82 -0.25 5.97 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.06 1.23 8.04 -51.93 -0.42 0.81 16 40 H 0.03 0.77 7.41 -51.93 -0.38 0.39 16 41 H -0.01 -0.16 5.76 -51.93 -0.30 -0.46 16 42 H 0.04 1.15 7.19 -51.93 -0.37 0.77 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 358.65 15.07 5.40 5.40 Total: -1.00 -33.64 358.65 -6.67 -40.31 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.74 Total: 1.93 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.84 Total: 2.77 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.25 Total: -58.18 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.28 Total: -9.72 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.64 -6.67 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.188 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds