Wall clock time and date at job start Fri Apr 10 2020 20:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35448 * 126.77418 * 2 1 4 4 C 1.41379 * 103.98366 * 180.09507 * 3 2 1 5 5 C 1.50701 * 126.80346 * 179.88411 * 4 3 2 6 6 C 1.52999 * 109.47113 * 124.70955 * 5 4 3 7 7 C 1.50701 * 109.47113 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99975 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99943 * 179.97438 * 7 6 5 10 10 C 1.46493 * 119.99905 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47528 * 35.00273 * 10 9 7 12 12 C 1.52997 * 109.47317 * 274.99989 * 10 9 7 13 13 C 1.53005 * 109.47268 * 155.00178 * 10 9 7 14 14 N 1.46503 * 109.47129 * 305.00119 * 13 10 9 15 15 C 1.46499 * 119.99978 * 269.72453 * 14 13 10 16 16 C 1.36939 * 119.99922 * 89.99236 * 14 13 10 17 17 H 1.08002 * 120.00365 * 342.71157 * 16 14 13 18 18 C 1.38816 * 119.99872 * 162.70845 * 16 14 13 19 19 N 1.31620 * 119.99703 * 345.44197 * 18 16 14 20 20 Si 1.86799 * 120.00064 * 165.44166 * 18 16 14 21 21 H 1.48499 * 109.46835 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47196 * 120.00047 * 20 18 16 23 23 H 1.48496 * 109.46925 * 240.00214 * 20 18 16 24 24 N 1.30177 * 106.39410 * 359.62824 * 4 3 2 25 25 O 1.20914 * 111.60367 * 0.23617 * 24 4 3 26 26 H 1.08999 * 109.46925 * 180.30150 * 1 2 3 27 27 H 1.09004 * 109.47426 * 300.30192 * 1 2 3 28 28 H 1.09000 * 109.47151 * 60.30391 * 1 2 3 29 29 H 1.07999 * 128.00994 * 359.95531 * 3 2 1 30 30 H 1.09006 * 109.47214 * 4.71301 * 5 4 3 31 31 H 1.08999 * 109.47680 * 244.71414 * 5 4 3 32 32 H 1.09004 * 109.46987 * 60.00599 * 6 5 4 33 33 H 1.08999 * 109.47222 * 300.00740 * 6 5 4 34 34 H 0.97006 * 119.99972 * 0.02562 * 9 7 6 35 35 H 1.08999 * 109.47386 * 300.00170 * 12 10 9 36 36 H 1.09002 * 109.47147 * 60.00345 * 12 10 9 37 37 H 1.08997 * 109.47591 * 180.02562 * 12 10 9 38 38 H 1.08993 * 109.47600 * 184.99602 * 13 10 9 39 39 H 1.09001 * 109.46815 * 64.99594 * 13 10 9 40 40 H 1.09001 * 109.46994 * 265.36631 * 15 14 13 41 41 H 1.09005 * 109.46793 * 25.36117 * 15 14 13 42 42 H 1.08997 * 109.47032 * 145.36371 * 15 14 13 43 43 H 0.97002 * 119.99714 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5373 -0.0023 5 6 4.9211 1.3000 -0.0057 6 6 5.7791 0.8508 1.1787 7 6 7.0791 1.6131 1.1749 8 8 7.2976 2.4351 0.3104 9 7 7.9986 1.3820 2.1329 10 6 9.2620 2.1234 2.1296 11 1 9.0869 3.1383 1.7724 12 6 10.2617 1.4234 1.2069 13 6 9.8278 2.1734 3.5503 14 7 8.8232 2.7353 4.4566 15 6 8.7768 4.1803 4.6934 16 6 7.9311 1.9092 5.0866 17 1 7.7741 0.9050 4.7214 18 6 7.2285 2.3625 6.1947 19 7 7.6121 3.4589 6.8137 20 14 5.7388 1.4166 6.8072 21 1 5.5173 0.2290 5.9437 22 1 5.9732 0.9756 8.2058 23 1 4.5414 2.2935 6.7588 24 7 3.4763 -0.7564 0.0047 25 8 2.3095 -1.0735 0.0062 26 1 -0.3633 -1.0276 0.0054 27 1 -0.3634 0.5185 0.8873 28 1 -0.3633 0.5091 -0.8927 29 1 2.0345 2.1271 -0.0007 30 1 4.7162 2.3674 0.0783 31 1 5.4547 1.1046 -0.9358 32 1 5.9840 -0.2165 1.0947 33 1 5.2455 1.0462 2.1088 34 1 7.8237 0.7248 2.8247 35 1 10.4369 0.4086 1.5641 36 1 9.8587 1.3878 0.1948 37 1 11.2020 1.9747 1.2047 38 1 10.7202 2.7991 3.5642 39 1 10.0859 1.1652 3.8742 40 1 9.3495 4.4202 5.5893 41 1 9.2051 4.7026 3.8378 42 1 7.7416 4.4931 4.8292 43 1 7.1214 3.7755 7.5883 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:01 Heat of formation + Delta-G solvation = 34.086889 kcal Electronic energy + Delta-G solvation = -23965.653232 eV Core-core repulsion = 20435.812089 eV Total energy + Delta-G solvation = -3529.841143 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.97792 -39.35277 -36.52851 -35.24115 -34.02947 -33.65520 -31.80454 -31.05330 -29.91734 -27.98591 -26.21082 -25.64822 -25.27928 -23.09730 -21.87347 -20.49688 -19.80327 -19.55210 -17.71500 -17.40414 -16.92688 -16.25176 -15.60818 -15.30867 -14.98875 -14.58963 -14.03872 -13.77431 -13.65897 -13.55586 -13.37513 -12.98150 -12.95076 -12.75089 -12.47985 -12.11987 -12.05452 -11.91132 -11.60851 -11.45999 -11.06748 -10.89505 -10.87075 -10.83644 -10.39422 -10.30320 -10.06466 -10.01334 -9.88819 -9.44007 -9.27242 -8.57580 -8.39950 -6.83515 -5.76780 -3.18262 1.37675 2.16835 3.01408 3.16454 3.32591 3.38951 3.41445 3.73848 4.17319 4.36151 4.44130 4.88558 4.97429 5.09098 5.09429 5.17443 5.25913 5.30555 5.39978 5.46679 5.51904 5.60556 5.67696 5.72280 5.85519 5.94408 5.95047 6.05361 6.14541 6.17230 6.21376 6.46455 6.47050 6.76370 6.82937 7.16425 7.42498 7.63176 7.78154 8.15447 8.23066 8.31892 8.79491 9.18368 9.82889 10.30846 11.28184 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.004421 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.119027 B = 6332.358514 C = 7937.597893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.038 4.038 3 C -0.231 4.231 4 C 0.026 3.974 5 C -0.023 4.023 6 C -0.138 4.138 7 C 0.516 3.484 8 O -0.562 6.562 9 N -0.695 5.695 10 C 0.117 3.883 11 H 0.077 0.923 12 C -0.158 4.158 13 C 0.141 3.859 14 N -0.601 5.601 15 C 0.165 3.835 16 C -0.249 4.249 17 H 0.068 0.932 18 C 0.001 3.999 19 N -0.905 5.905 20 Si 0.898 3.102 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 N -0.365 5.365 25 O 0.096 5.904 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.171 0.829 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.403 0.597 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.026 0.974 41 H -0.005 1.005 42 H 0.048 0.952 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.141 -5.631 -12.932 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.252 4.252 4 C -0.132 4.132 5 C -0.061 4.061 6 C -0.178 4.178 7 C 0.302 3.698 8 O -0.442 6.442 9 N -0.345 5.345 10 C 0.010 3.990 11 H 0.095 0.905 12 C -0.217 4.217 13 C 0.013 3.987 14 N -0.323 5.323 15 C 0.021 3.979 16 C -0.378 4.378 17 H 0.085 0.915 18 C -0.197 4.197 19 N -0.551 5.551 20 Si 0.728 3.272 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 N -0.069 5.069 25 O 0.030 5.970 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.189 0.811 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.239 0.761 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.014 0.986 42 H 0.066 0.934 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.186 -5.985 -13.344 16.760 hybrid contribution -1.310 0.074 0.887 1.584 sum -9.496 -5.912 -12.457 16.742 Atomic orbital electron populations 1.20322 0.84149 1.04546 1.04047 1.24490 0.96359 0.86347 1.02983 1.22462 0.91417 1.01098 1.10240 1.23676 0.97557 0.89977 1.02014 1.19721 0.88181 0.98928 0.99304 1.21595 0.94510 1.01353 1.00358 1.20353 0.85056 0.82863 0.81540 1.90630 1.79646 1.35781 1.38121 1.45936 1.17519 1.42200 1.28820 1.21851 0.83051 0.95625 0.98518 0.90514 1.22122 0.99165 1.00586 0.99851 1.21053 0.91495 0.98206 0.87962 1.43891 1.35019 1.03223 1.50213 1.20800 1.00455 0.82017 0.94656 1.19095 1.15432 0.96219 1.07090 0.91471 1.24886 1.00283 0.97995 0.96544 1.70116 1.39812 1.24294 1.20871 0.86288 0.83238 0.79090 0.78563 1.20364 1.21733 1.21672 1.73819 0.96718 1.16445 1.19965 1.84817 1.11381 1.33186 1.67610 0.89993 0.89176 0.89288 0.81147 0.88773 0.89254 0.88913 0.88583 0.76070 0.92931 0.92916 0.92149 0.92997 0.93090 0.95567 0.98618 0.93363 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.45 36.01 0.38 -0.03 16 2 C -0.04 -0.39 7.49 -35.30 -0.26 -0.65 16 3 C -0.23 -2.59 11.05 -39.38 -0.44 -3.02 16 4 C 0.03 0.36 6.59 -82.10 -0.54 -0.18 16 5 C -0.02 -0.32 5.10 -27.88 -0.14 -0.46 16 6 C -0.14 -2.07 5.67 -27.88 -0.16 -2.23 16 7 C 0.52 9.25 7.79 -10.98 -0.09 9.16 16 8 O -0.56 -11.47 15.64 5.56 0.09 -11.39 16 9 N -0.69 -12.47 4.49 -53.81 -0.24 -12.71 16 10 C 0.12 2.10 2.88 -67.93 -0.20 1.91 16 11 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 12 C -0.16 -2.35 9.48 37.16 0.35 -2.00 16 13 C 0.14 2.75 5.30 -4.04 -0.02 2.72 16 14 N -0.60 -14.45 2.83 -181.11 -0.51 -14.96 16 15 C 0.17 4.08 8.97 59.85 0.54 4.62 16 16 C -0.25 -6.39 8.80 -15.06 -0.13 -6.53 16 17 H 0.07 1.63 6.40 -52.49 -0.34 1.29 16 18 C 0.00 0.03 5.09 -17.43 -0.09 -0.06 16 19 N -0.91 -25.92 10.45 55.49 0.58 -25.33 16 20 Si 0.90 21.24 29.58 -169.99 -5.03 16.22 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 N -0.36 -5.32 12.06 33.42 0.40 -4.92 16 25 O 0.10 1.23 11.20 17.19 0.19 1.43 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 31 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.40 7.15 6.58 -40.82 -0.27 6.88 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 39 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 40 H 0.03 0.69 7.51 -51.93 -0.39 0.30 16 41 H 0.00 -0.11 8.04 -51.93 -0.42 -0.52 16 42 H 0.05 1.30 6.95 -51.93 -0.36 0.94 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -31.93 359.10 -6.69 -38.62 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.78 Total: 4.39 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -0.80 Total: 3.25 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.23 Total: -57.93 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.28 Total: -9.96 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.93 -6.69 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.705 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds