Wall clock time and date at job start Fri Apr 10 2020 20:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36059 * 117.00084 * 2 1 4 4 C 1.38638 * 119.98793 * 0.02562 * 3 2 1 5 5 C 1.38140 * 120.04428 * 180.02562 * 4 3 2 6 6 C 1.38866 * 120.01997 * 359.97438 * 5 4 3 7 7 N 1.39931 * 120.00971 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99643 * 185.76524 * 7 6 5 9 9 C 1.52997 * 109.47345 * 270.00186 * 8 7 6 10 10 C 1.52999 * 109.47282 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.46955 * 180.02562 * 10 9 8 12 12 H 1.07989 * 120.00369 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99733 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00379 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 120.00199 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47047 * 89.99892 * 15 13 11 17 17 H 1.48500 * 109.47107 * 210.00271 * 15 13 11 18 18 H 1.48500 * 109.46841 * 330.00119 * 15 13 11 19 19 C 1.46499 * 120.00308 * 5.76867 * 7 6 5 20 20 C 1.52999 * 109.46955 * 235.35194 * 19 7 6 21 21 C 1.53000 * 109.46783 * 115.35391 * 19 7 6 22 22 C 1.38841 * 119.97566 * 0.28514 * 6 5 4 23 23 C 1.38296 * 119.95703 * 359.41651 * 22 6 5 24 24 F 1.35103 * 120.01021 * 180.27802 * 23 22 6 25 25 H 1.09001 * 109.47330 * 59.99619 * 1 2 3 26 26 H 1.08997 * 109.47147 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46985 * 299.99909 * 1 2 3 28 28 H 1.08001 * 119.97710 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.99278 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47335 * 30.00355 * 8 7 6 31 31 H 1.09003 * 109.47040 * 150.00483 * 8 7 6 32 32 H 1.09000 * 109.47042 * 300.00349 * 9 8 7 33 33 H 1.09003 * 109.46809 * 60.00156 * 9 8 7 34 34 H 1.09000 * 109.47214 * 300.00056 * 10 9 8 35 35 H 1.08996 * 109.47456 * 59.99933 * 10 9 8 36 36 H 0.96991 * 120.00378 * 180.02562 * 14 13 11 37 37 H 1.08994 * 109.46574 * 355.35461 * 19 7 6 38 38 H 1.08993 * 109.46980 * 299.99785 * 20 19 7 39 39 H 1.08999 * 109.46522 * 179.97438 * 20 19 7 40 40 H 1.08998 * 109.46674 * 60.00388 * 20 19 7 41 41 H 1.09008 * 109.46771 * 180.02562 * 21 19 7 42 42 H 1.09006 * 109.46960 * 299.99653 * 21 19 7 43 43 H 1.08994 * 109.47244 * 60.00160 * 21 19 7 44 44 H 1.08003 * 120.02212 * 179.70096 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2914 2.3749 0.0005 5 6 1.9173 3.6063 0.0000 6 6 3.3040 3.6808 -0.0005 7 7 3.9378 4.9283 -0.0005 8 6 5.3950 5.0095 -0.1286 9 6 6.0321 4.9718 1.2620 10 6 7.5538 5.0573 1.1283 11 6 8.1813 5.0195 2.4979 12 1 7.5572 4.9427 3.3759 13 6 9.5522 5.0840 2.6301 14 7 10.0999 5.0506 3.8253 15 14 10.6318 5.2176 1.1115 16 1 10.8452 6.6494 0.7803 17 1 11.9417 4.5703 1.3769 18 1 9.9666 4.5393 -0.0299 19 6 3.1444 6.1532 0.1275 20 6 3.4468 7.0822 -1.0499 21 6 3.5018 6.8576 1.4379 22 6 4.0612 2.5171 -0.0065 23 6 3.4336 1.2847 0.0003 24 9 4.1694 0.1517 0.0001 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2129 2.3177 0.0014 29 1 1.3281 4.5114 0.0000 30 1 5.7557 4.1655 -0.7165 31 1 5.6647 5.9409 -0.6266 32 1 5.6714 5.8158 1.8499 33 1 5.7625 4.0404 1.7600 34 1 7.9149 4.2135 0.5402 35 1 7.8232 5.9887 0.6304 36 1 11.0643 5.0964 3.9184 37 1 2.0841 5.9007 0.1282 38 1 4.5071 7.3345 -1.0505 39 1 2.8561 7.9932 -0.9548 40 1 3.1922 6.5802 -1.9833 41 1 2.9111 7.7687 1.5334 42 1 3.2863 6.1957 2.2767 43 1 4.5621 7.1100 1.4372 44 1 5.1397 2.5742 -0.0118 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102401708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:10 Heat of formation + Delta-G solvation = -56.685034 kcal Electronic energy + Delta-G solvation = -24096.491370 eV Core-core repulsion = 20542.794100 eV Total energy + Delta-G solvation = -3553.697270 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.61844 -40.14246 -38.79950 -36.40282 -34.13086 -32.49531 -31.44544 -30.58742 -28.80307 -27.68899 -27.25407 -26.14005 -23.51291 -22.60047 -21.79314 -20.18218 -19.72694 -18.55411 -17.31917 -16.92722 -16.58009 -16.06660 -15.96978 -14.99548 -14.94888 -14.67593 -14.37850 -14.14685 -14.09133 -13.85265 -13.71566 -12.90331 -12.75001 -12.70804 -12.49780 -12.31909 -12.14898 -11.94541 -11.73953 -11.59683 -11.48943 -11.18956 -11.17861 -11.06172 -10.72138 -10.54465 -9.97907 -9.84869 -9.64399 -9.24960 -9.12489 -8.73247 -8.53614 -6.97676 -6.03718 -4.01901 1.19351 1.51777 3.09186 3.26526 3.30079 3.38244 3.41158 3.69572 4.34216 4.45113 4.60373 4.78556 4.87937 4.99759 5.02376 5.07995 5.22785 5.25178 5.29497 5.30321 5.34011 5.52814 5.58194 5.64966 5.71297 5.80672 5.82203 5.88445 5.99795 6.03182 6.11643 6.14665 6.25322 6.29828 6.49129 6.58804 6.62620 6.87847 7.29718 7.30057 7.37933 7.44598 7.62222 7.79719 8.54776 9.01594 9.58557 11.09845 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014692 B = 0.004149 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.360757 B = 6746.998046 C = 8028.064018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.316 6.316 3 C 0.023 3.977 4 C -0.131 4.131 5 C -0.180 4.180 6 C 0.226 3.774 7 N -0.615 5.615 8 C 0.114 3.886 9 C -0.125 4.125 10 C -0.012 4.012 11 C -0.519 4.519 12 H 0.071 0.929 13 C 0.066 3.934 14 N -0.904 5.904 15 Si 0.880 3.120 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.265 1.265 19 C 0.143 3.857 20 C -0.165 4.165 21 C -0.170 4.170 22 C -0.196 4.196 23 C 0.123 3.877 24 F -0.133 7.133 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.015 0.985 35 H 0.010 0.990 36 H 0.263 0.737 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.260 -1.474 -10.982 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C -0.023 4.023 4 C -0.150 4.150 5 C -0.203 4.203 6 C 0.123 3.877 7 N -0.324 5.324 8 C -0.008 4.008 9 C -0.164 4.164 10 C -0.050 4.050 11 C -0.557 4.557 12 H 0.089 0.911 13 C -0.135 4.135 14 N -0.543 5.543 15 Si 0.707 3.293 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.190 1.190 19 C 0.040 3.960 20 C -0.223 4.223 21 C -0.228 4.228 22 C -0.220 4.220 23 C 0.103 3.897 24 F -0.111 7.111 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.071 0.929 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.033 0.967 35 H 0.028 0.972 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.882 -1.522 -10.899 23.604 hybrid contribution 0.662 0.046 -0.560 0.869 sum -20.220 -1.476 -11.459 23.288 Atomic orbital electron populations 1.22981 0.78896 1.03604 1.00990 1.86110 1.20832 1.26005 1.90121 1.18656 0.90543 0.85401 1.07738 1.20770 0.99494 0.90984 1.03745 1.20511 0.92505 0.97561 1.09701 1.17452 0.90985 0.85418 0.93867 1.46874 1.05972 1.01715 1.77878 1.21755 0.77840 1.02123 0.99060 1.22062 0.97499 1.02078 0.94722 1.19528 0.91405 0.96074 0.98008 1.21111 0.92079 1.50401 0.92062 0.91129 1.25042 0.98123 0.94634 0.95724 1.69913 1.11126 1.51099 1.22143 0.86784 0.79994 0.78459 0.84067 1.20368 1.21395 1.18985 1.21012 0.95590 0.84376 0.95067 1.22195 1.02767 0.99226 0.98095 1.22368 1.03218 1.00102 0.97127 1.20593 1.01340 0.89155 1.10897 1.16652 0.85698 0.82387 1.05003 1.91494 1.76780 1.48908 1.93922 0.92976 0.88538 0.92899 0.84988 0.85218 0.91219 0.90831 0.91831 0.92488 0.96688 0.97159 0.92755 0.89632 0.91773 0.91730 0.92433 0.92174 0.92127 0.90950 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.16 10.36 -19.93 -0.21 -4.37 16 3 C 0.02 0.32 6.69 -39.20 -0.26 0.06 16 4 C -0.13 -1.47 9.03 -39.47 -0.36 -1.83 16 5 C -0.18 -2.10 9.31 -39.39 -0.37 -2.46 16 6 C 0.23 3.11 6.54 -83.70 -0.55 2.56 16 7 N -0.62 -8.17 2.54 -164.14 -0.42 -8.59 16 8 C 0.11 1.73 4.58 -4.04 -0.02 1.71 16 9 C -0.13 -2.38 5.18 -26.73 -0.14 -2.52 16 10 C -0.01 -0.28 4.04 -27.88 -0.11 -0.40 16 11 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 12 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 13 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 14 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 15 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 19 C 0.14 1.56 3.20 -67.93 -0.22 1.34 16 20 C -0.16 -1.58 9.08 37.16 0.34 -1.24 16 21 C -0.17 -1.97 8.42 37.16 0.31 -1.66 16 22 C -0.20 -2.99 9.08 -39.34 -0.36 -3.35 16 23 C 0.12 1.92 7.31 -39.32 -0.29 1.63 16 24 F -0.13 -2.25 17.11 2.25 0.04 -2.21 16 25 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 28 H 0.13 1.09 6.29 -52.49 -0.33 0.76 16 29 H 0.13 1.22 5.74 -52.48 -0.30 0.92 16 30 H 0.07 1.05 6.44 -51.93 -0.33 0.72 16 31 H 0.07 1.04 6.19 -51.93 -0.32 0.72 16 32 H 0.06 1.21 5.42 -51.93 -0.28 0.93 16 33 H 0.06 1.16 8.02 -51.93 -0.42 0.74 16 34 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 35 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.09 0.80 5.31 -51.93 -0.28 0.53 16 38 H 0.06 0.68 6.53 -51.93 -0.34 0.34 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.98 6.01 -51.93 -0.31 0.66 16 44 H 0.15 2.33 6.20 -52.48 -0.33 2.00 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -32.10 348.85 -7.18 -39.28 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.50 Total: -0.91 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -1.45 Total: -18.20 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.36 Total: -35.90 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.21 Total: -4.37 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.10 -7.18 -39.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102401708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.406 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds