Wall clock time and date at job start Fri Apr 10 2020 20:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36059 * 117.00084 * 2 1 4 4 C 1.38638 * 119.98793 * 0.02562 * 3 2 1 5 5 C 1.38140 * 120.04428 * 180.02562 * 4 3 2 6 6 C 1.38866 * 120.01997 * 359.97438 * 5 4 3 7 7 N 1.39931 * 120.00971 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99643 * 185.76524 * 7 6 5 9 9 C 1.52997 * 109.47345 * 270.00186 * 8 7 6 10 10 C 1.52999 * 109.47282 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.46955 * 180.02562 * 10 9 8 12 12 H 1.07989 * 120.00369 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99733 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00379 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 120.00199 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47047 * 89.99892 * 15 13 11 17 17 H 1.48500 * 109.47107 * 210.00271 * 15 13 11 18 18 H 1.48500 * 109.46841 * 330.00119 * 15 13 11 19 19 C 1.46499 * 120.00308 * 5.76867 * 7 6 5 20 20 C 1.52999 * 109.46955 * 235.35194 * 19 7 6 21 21 C 1.53000 * 109.46783 * 115.35391 * 19 7 6 22 22 C 1.38841 * 119.97566 * 0.28514 * 6 5 4 23 23 C 1.38296 * 119.95703 * 359.41651 * 22 6 5 24 24 F 1.35103 * 120.01021 * 180.27802 * 23 22 6 25 25 H 1.09001 * 109.47330 * 59.99619 * 1 2 3 26 26 H 1.08997 * 109.47147 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46985 * 299.99909 * 1 2 3 28 28 H 1.08001 * 119.97710 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.99278 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47335 * 30.00355 * 8 7 6 31 31 H 1.09003 * 109.47040 * 150.00483 * 8 7 6 32 32 H 1.09000 * 109.47042 * 300.00349 * 9 8 7 33 33 H 1.09003 * 109.46809 * 60.00156 * 9 8 7 34 34 H 1.09000 * 109.47214 * 300.00056 * 10 9 8 35 35 H 1.08996 * 109.47456 * 59.99933 * 10 9 8 36 36 H 0.96991 * 120.00378 * 180.02562 * 14 13 11 37 37 H 1.08994 * 109.46574 * 355.35461 * 19 7 6 38 38 H 1.08993 * 109.46980 * 299.99785 * 20 19 7 39 39 H 1.08999 * 109.46522 * 179.97438 * 20 19 7 40 40 H 1.08998 * 109.46674 * 60.00388 * 20 19 7 41 41 H 1.09008 * 109.46771 * 180.02562 * 21 19 7 42 42 H 1.09006 * 109.46960 * 299.99653 * 21 19 7 43 43 H 1.08994 * 109.47244 * 60.00160 * 21 19 7 44 44 H 1.08003 * 120.02212 * 179.70096 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2914 2.3749 0.0005 5 6 1.9173 3.6063 0.0000 6 6 3.3040 3.6808 -0.0005 7 7 3.9378 4.9283 -0.0005 8 6 5.3950 5.0095 -0.1286 9 6 6.0321 4.9718 1.2620 10 6 7.5538 5.0573 1.1283 11 6 8.1813 5.0195 2.4979 12 1 7.5572 4.9427 3.3759 13 6 9.5522 5.0840 2.6301 14 7 10.0999 5.0506 3.8253 15 14 10.6318 5.2176 1.1115 16 1 10.8452 6.6494 0.7803 17 1 11.9417 4.5703 1.3769 18 1 9.9666 4.5393 -0.0299 19 6 3.1444 6.1532 0.1275 20 6 3.4468 7.0822 -1.0499 21 6 3.5018 6.8576 1.4379 22 6 4.0612 2.5171 -0.0065 23 6 3.4336 1.2847 0.0003 24 9 4.1694 0.1517 0.0001 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2129 2.3177 0.0014 29 1 1.3281 4.5114 0.0000 30 1 5.7557 4.1655 -0.7165 31 1 5.6647 5.9409 -0.6266 32 1 5.6714 5.8158 1.8499 33 1 5.7625 4.0404 1.7600 34 1 7.9149 4.2135 0.5402 35 1 7.8232 5.9887 0.6304 36 1 11.0643 5.0964 3.9184 37 1 2.0841 5.9007 0.1282 38 1 4.5071 7.3345 -1.0505 39 1 2.8561 7.9932 -0.9548 40 1 3.1922 6.5802 -1.9833 41 1 2.9111 7.7687 1.5334 42 1 3.2863 6.1957 2.2767 43 1 4.5621 7.1100 1.4372 44 1 5.1397 2.5742 -0.0118 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102401708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:09 Heat of formation + Delta-G solvation = -75.238880 kcal Electronic energy + Delta-G solvation = -24097.295925 eV Core-core repulsion = 20542.794100 eV Total energy + Delta-G solvation = -3554.501825 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.82934 -41.12884 -39.77136 -37.42290 -35.84018 -34.10518 -32.85250 -31.62359 -30.05015 -28.77482 -28.10015 -27.31053 -24.97138 -23.73640 -22.86041 -21.90380 -20.75270 -19.55579 -18.91363 -18.23258 -17.87042 -17.06152 -17.02923 -16.42180 -15.97998 -15.87388 -15.65741 -15.51674 -15.23024 -14.99620 -14.74637 -14.66557 -13.89645 -13.78748 -13.72878 -13.36884 -13.31334 -13.12241 -12.95430 -12.68844 -12.63187 -12.41176 -12.26025 -12.09164 -12.00103 -11.85442 -11.75762 -11.42318 -11.39415 -11.12806 -10.76751 -10.22394 -9.82856 -8.30348 -8.01015 -6.34658 0.16188 0.49463 1.34408 1.37761 1.49346 2.09576 2.35483 2.41117 2.67896 3.05220 3.31508 3.71358 3.86444 4.03476 4.14911 4.17875 4.21625 4.37537 4.41575 4.46969 4.48101 4.50592 4.60301 4.67580 4.73146 4.77885 4.81265 4.85127 4.97443 5.01473 5.03573 5.06497 5.09947 5.22273 5.26174 5.35854 5.43332 5.54112 5.60280 5.61969 5.66202 6.25415 6.37167 6.43146 6.61492 6.73762 7.29912 8.87010 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014692 B = 0.004149 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.360757 B = 6746.998046 C = 8028.064018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.343 6.343 3 C 0.021 3.979 4 C -0.119 4.119 5 C -0.165 4.165 6 C 0.213 3.787 7 N -0.616 5.616 8 C 0.127 3.873 9 C -0.113 4.113 10 C -0.009 4.009 11 C -0.532 4.532 12 H 0.025 0.975 13 C 0.001 3.999 14 N -0.954 5.954 15 Si 0.953 3.047 16 H -0.262 1.262 17 H -0.286 1.286 18 H -0.245 1.245 19 C 0.140 3.860 20 C -0.160 4.160 21 C -0.168 4.168 22 C -0.215 4.215 23 C 0.087 3.913 24 F -0.152 7.152 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.067 0.933 28 H 0.171 0.829 29 H 0.163 0.837 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.032 0.968 34 H 0.016 0.984 35 H 0.025 0.975 36 H 0.266 0.734 37 H 0.110 0.890 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.042 0.958 43 H 0.048 0.952 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.853 -0.164 -13.514 27.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.258 6.258 3 C -0.026 4.026 4 C -0.138 4.138 5 C -0.187 4.187 6 C 0.110 3.890 7 N -0.326 5.326 8 C 0.003 3.997 9 C -0.152 4.152 10 C -0.047 4.047 11 C -0.570 4.570 12 H 0.043 0.957 13 C -0.195 4.195 14 N -0.595 5.595 15 Si 0.776 3.224 16 H -0.186 1.186 17 H -0.212 1.212 18 H -0.169 1.169 19 C 0.038 3.962 20 C -0.218 4.218 21 C -0.226 4.226 22 C -0.238 4.238 23 C 0.066 3.934 24 F -0.130 7.130 25 H 0.089 0.911 26 H 0.132 0.868 27 H 0.085 0.915 28 H 0.188 0.812 29 H 0.180 0.820 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.035 0.965 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.522 -0.210 -13.438 27.091 hybrid contribution 1.324 -0.402 0.361 1.430 sum -22.198 -0.612 -13.077 25.771 Atomic orbital electron populations 1.23345 0.76196 1.05436 1.02516 1.86085 1.23693 1.26001 1.90019 1.18822 0.89982 0.86678 1.07127 1.21180 1.01199 0.89714 1.01722 1.20883 0.91530 0.98990 1.07304 1.17635 0.92015 0.84931 0.94402 1.46874 1.05165 1.02505 1.78018 1.21448 0.79256 1.02909 0.96046 1.21887 0.95220 1.00626 0.97420 1.19467 0.93823 0.96592 0.94804 1.21484 0.92212 1.50005 0.93264 0.95699 1.26083 0.99857 0.94146 0.99438 1.70080 1.11706 1.52707 1.24995 0.85615 0.77512 0.79428 0.79842 1.18648 1.21222 1.16864 1.21252 0.96383 0.83471 0.95088 1.22156 1.02387 0.99760 0.97448 1.22344 1.02112 1.01004 0.97143 1.20529 1.00708 0.90092 1.12491 1.17013 0.86928 0.81981 1.07450 1.91427 1.77426 1.49834 1.94356 0.91105 0.86844 0.91484 0.81154 0.82021 0.91363 0.89165 0.92219 0.94889 0.96522 0.95644 0.92535 0.87229 0.93004 0.89538 0.91981 0.89598 0.93865 0.93323 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.64 10.36 -94.22 -0.98 -9.62 16 3 C 0.02 0.55 6.69 22.52 0.15 0.70 16 4 C -0.12 -2.31 9.03 22.34 0.20 -2.10 16 5 C -0.17 -3.30 9.31 22.40 0.21 -3.09 16 6 C 0.21 5.61 6.54 38.14 0.25 5.86 16 7 N -0.62 -15.48 2.54 -673.22 -1.71 -17.19 16 8 C 0.13 3.76 4.58 86.38 0.40 4.15 16 9 C -0.11 -4.41 5.18 30.59 0.16 -4.25 16 10 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 11 C -0.53 -31.51 9.66 25.60 0.25 -31.26 16 12 H 0.02 1.64 7.99 -2.92 -0.02 1.61 16 13 C 0.00 0.07 5.47 84.65 0.46 0.53 16 14 N -0.95 -61.38 13.96 21.45 0.30 -61.09 16 15 Si 0.95 44.85 27.47 68.60 1.88 46.73 16 16 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 18 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 19 C 0.14 2.64 3.20 44.99 0.14 2.78 16 20 C -0.16 -2.50 9.08 71.98 0.65 -1.85 16 21 C -0.17 -3.61 8.42 71.98 0.61 -3.01 16 22 C -0.21 -6.75 9.08 22.43 0.20 -6.54 16 23 C 0.09 2.79 7.31 22.44 0.16 2.95 16 24 F -0.15 -5.48 17.11 44.97 0.77 -4.72 16 25 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 26 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 0.69 7.66 -2.38 -0.02 0.68 16 28 H 0.17 1.94 6.29 -2.91 -0.02 1.93 16 29 H 0.16 2.17 5.74 -2.91 -0.02 2.15 16 30 H 0.07 2.06 6.44 -2.39 -0.02 2.04 16 31 H 0.09 2.40 6.19 -2.39 -0.01 2.38 16 32 H 0.06 2.36 5.42 -2.39 -0.01 2.34 16 33 H 0.03 1.41 8.02 -2.39 -0.02 1.39 16 34 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 35 H 0.03 1.12 7.57 -2.39 -0.02 1.10 16 36 H 0.27 15.91 8.31 -92.72 -0.77 15.14 16 37 H 0.11 1.54 5.31 -2.39 -0.01 1.53 16 38 H 0.05 0.95 6.53 -2.39 -0.02 0.93 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.05 1.28 6.01 -2.39 -0.01 1.26 16 44 H 0.13 4.35 6.20 -2.91 -0.02 4.33 16 Total: -1.00 -74.17 348.85 6.29 -67.88 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.94 Total: 12.05 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 5.08 Total: -34.05 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -1.41 Total: -78.28 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.98 Total: -9.62 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.77 Total: -4.72 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Total: -74.17 6.29 -67.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102401708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.359 kcal (2) G-P(sol) polarization free energy of solvation -74.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds