Wall clock time and date at job start Fri Apr 10 2020 20:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47290 * 175.06517 * 3 2 1 5 5 H 1.09000 * 109.47068 * 305.27282 * 4 3 2 6 6 O 1.42901 * 109.47285 * 65.27476 * 4 3 2 7 7 C 1.42902 * 114.00183 * 209.39691 * 6 4 3 8 8 C 1.53001 * 109.46845 * 184.82720 * 7 6 4 9 9 C 1.50699 * 109.47476 * 185.27707 * 4 3 2 10 10 O 1.21589 * 119.99846 * 245.00318 * 9 4 3 11 11 N 1.32914 * 120.00031 * 64.99608 * 9 4 3 12 12 C 1.33302 * 119.99738 * 179.97438 * 11 9 4 13 13 C 1.40983 * 126.36117 * 359.96697 * 12 11 9 14 14 C 1.35125 * 108.24238 * 180.02562 * 13 12 11 15 15 N 1.36337 * 108.89632 * 359.74443 * 14 13 12 16 16 C 1.46502 * 125.86451 * 180.24699 * 15 14 13 17 17 C 1.50697 * 109.46965 * 275.18504 * 16 15 14 18 18 H 1.07996 * 120.00250 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99952 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99685 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00081 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47018 * 90.00494 * 21 19 17 23 23 H 1.48499 * 109.46997 * 210.00640 * 21 19 17 24 24 H 1.48501 * 109.47113 * 330.00328 * 21 19 17 25 25 N 1.37282 * 126.35592 * 180.02562 * 12 11 9 26 26 H 0.97002 * 126.34463 * 359.94440 * 25 12 11 27 27 H 1.09010 * 109.46949 * 300.00123 * 1 2 3 28 28 H 1.09002 * 109.46837 * 59.99765 * 1 2 3 29 29 H 1.08991 * 109.47123 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47004 * 239.99842 * 2 1 3 31 31 H 1.09002 * 109.46951 * 119.99691 * 2 1 3 32 32 H 1.09004 * 109.47462 * 55.06644 * 3 2 1 33 33 H 1.08998 * 109.47389 * 295.06417 * 3 2 1 34 34 H 1.09001 * 109.46839 * 304.82832 * 7 6 4 35 35 H 1.08995 * 109.47254 * 64.82619 * 7 6 4 36 36 H 1.08992 * 109.47332 * 299.99910 * 8 7 6 37 37 H 1.09000 * 109.46870 * 60.00165 * 8 7 6 38 38 H 1.09000 * 109.46842 * 179.97438 * 8 7 6 39 39 H 1.08005 * 125.87754 * 0.02562 * 13 12 11 40 40 H 1.08000 * 125.55038 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.46685 * 35.17991 * 16 15 14 42 42 H 1.08998 * 109.46933 * 155.18078 * 16 15 14 43 43 H 0.97000 * 119.99858 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 0.1241 5 1 3.8583 0.8756 1.0065 6 8 4.1384 0.8465 -1.0403 7 6 5.3902 0.1989 -0.8047 8 6 5.9659 -0.2967 -2.1329 9 6 4.0567 2.8628 0.2544 10 8 4.7513 3.3480 -0.6176 11 7 3.7310 3.5836 1.3226 12 6 4.1665 4.8382 1.4381 13 6 4.9754 5.5306 0.5141 14 6 5.1971 6.7740 0.9945 15 7 4.5552 6.9063 2.1900 16 6 4.5442 8.1066 3.0300 17 6 5.7715 8.1191 3.9044 18 1 6.4878 7.3134 3.8411 19 6 5.9798 9.1592 4.7852 20 7 5.1072 10.1401 4.8626 21 14 7.5008 9.1744 5.8696 22 1 8.6033 9.8776 5.1660 23 1 7.1955 9.8792 7.1405 24 1 7.9125 7.7784 6.1643 25 7 3.9114 5.6955 2.4795 26 1 3.3802 5.5009 3.2675 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6063 1.9813 0.8425 33 1 1.7507 1.9302 -0.9309 34 1 6.0843 0.9049 -0.3487 35 1 5.2409 -0.6479 -0.1349 36 1 5.2718 -1.0026 -2.5888 37 1 6.1152 0.5501 -2.8027 38 1 6.9210 -0.7903 -1.9532 39 1 5.3529 5.1352 -0.4174 40 1 5.7837 7.5395 0.5085 41 1 4.5405 8.9934 2.3962 42 1 3.6519 8.1037 3.6560 43 1 5.2536 10.8716 5.4825 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528612708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:05 Heat of formation + Delta-G solvation = 0.216880 kcal Electronic energy + Delta-G solvation = -23445.181336 eV Core-core repulsion = 19913.871479 eV Total energy + Delta-G solvation = -3531.309856 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.90689 -39.16990 -37.14044 -34.79813 -34.25204 -32.94426 -31.38974 -31.12609 -30.73713 -28.93504 -26.80183 -24.62412 -23.11874 -22.71265 -21.57883 -21.28670 -20.97346 -19.13648 -17.20453 -16.93408 -16.63380 -15.93090 -15.26812 -15.10241 -14.95741 -14.79379 -14.61085 -14.19301 -14.11763 -13.39539 -13.18364 -13.08508 -12.83119 -12.65839 -12.47896 -12.11755 -12.02173 -11.92904 -11.65239 -11.37971 -11.14593 -11.09671 -10.99489 -10.78591 -10.57676 -10.46239 -10.38944 -10.00189 -9.62165 -9.07932 -8.99946 -8.95397 -8.23653 -7.02471 -6.54632 -4.70583 1.60432 2.01046 2.94286 3.02797 3.10994 3.14891 3.79385 4.01860 4.22637 4.26720 4.76003 4.80152 5.06707 5.09822 5.17047 5.19546 5.21759 5.28003 5.45961 5.49926 5.65695 5.76321 5.77108 5.83215 5.88547 5.92466 5.95882 6.02188 6.14150 6.20037 6.31656 6.40892 6.45144 6.48575 6.50013 6.70323 7.32329 7.35794 7.43121 7.46628 7.59237 7.91371 8.29554 8.38880 9.00371 9.35137 10.48135 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.021526 B = 0.002940 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.416771 B = 9521.221567 C =10153.008911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.101 4.101 4 C 0.100 3.900 5 H 0.076 0.924 6 O -0.364 6.364 7 C 0.059 3.941 8 C -0.147 4.147 9 C 0.471 3.529 10 O -0.573 6.573 11 N -0.701 5.701 12 C 0.469 3.531 13 C -0.333 4.333 14 C 0.163 3.837 15 N -0.339 5.339 16 C 0.253 3.747 17 C -0.560 4.560 18 H 0.070 0.930 19 C 0.071 3.929 20 N -0.886 5.886 21 Si 0.910 3.090 22 H -0.274 1.274 23 H -0.281 1.281 24 H -0.271 1.271 25 N -0.465 5.465 26 H 0.445 0.555 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.183 0.817 40 H 0.189 0.811 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.609 -12.923 -6.708 15.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.139 4.139 4 C 0.039 3.961 5 H 0.094 0.906 6 O -0.282 6.282 7 C -0.018 4.018 8 C -0.204 4.204 9 C 0.255 3.745 10 O -0.453 6.453 11 N -0.467 5.467 12 C 0.220 3.780 13 C -0.365 4.365 14 C 0.017 3.983 15 N -0.124 5.124 16 C 0.137 3.863 17 C -0.598 4.598 18 H 0.088 0.912 19 C -0.135 4.135 20 N -0.522 5.522 21 Si 0.737 3.263 22 H -0.200 1.200 23 H -0.207 1.207 24 H -0.195 1.195 25 N -0.187 5.187 26 H 0.293 0.707 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.200 0.800 40 H 0.206 0.794 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.945 -12.654 -6.404 14.720 hybrid contribution 1.112 0.395 0.960 1.521 sum -2.833 -12.259 -5.444 13.709 Atomic orbital electron populations 1.21767 0.96039 1.01212 1.01829 1.21495 0.95498 0.96735 1.02084 1.21540 0.91556 0.97352 1.03453 1.21598 0.94413 0.91378 0.88673 0.90639 1.87914 1.35484 1.72052 1.32798 1.22434 0.86205 0.95335 0.97800 1.21693 1.00071 1.01581 0.97075 1.21352 0.80087 0.90168 0.82885 1.90530 1.38279 1.72159 1.44378 1.68710 1.42215 1.04176 1.31569 1.19235 0.86579 0.88528 0.83676 1.22472 1.12840 0.94714 1.06490 1.22898 0.92051 0.98918 0.84433 1.48081 1.41196 1.04073 1.19041 1.20100 0.99725 0.76510 0.89968 1.21399 1.06995 1.08987 1.22411 0.91204 1.24958 0.97355 0.94618 0.96546 1.69894 1.35233 1.10335 1.36786 0.86278 0.81862 0.78680 0.79519 1.19993 1.20690 1.19532 1.44593 1.47831 1.04362 1.21937 0.70745 0.92726 0.92824 0.93051 0.91575 0.92315 0.89414 0.91422 0.93344 0.93967 0.92228 0.91683 0.91553 0.79978 0.79420 0.91274 0.92961 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.34 5.78 -26.73 -0.15 -1.50 16 3 C -0.10 -1.39 4.89 -26.73 -0.13 -1.52 16 4 C 0.10 1.61 2.58 -27.89 -0.07 1.53 16 5 H 0.08 1.12 7.83 -51.93 -0.41 0.71 16 6 O -0.36 -5.89 9.16 -55.06 -0.50 -6.39 16 7 C 0.06 0.80 6.44 37.16 0.24 1.04 16 8 C -0.15 -1.65 10.28 37.16 0.38 -1.26 16 9 C 0.47 9.24 6.98 -11.81 -0.08 9.16 16 10 O -0.57 -12.61 13.41 -14.54 -0.20 -12.80 16 11 N -0.70 -13.64 10.37 -11.59 -0.12 -13.76 16 12 C 0.47 9.03 8.07 -155.19 -1.25 7.77 16 13 C -0.33 -6.20 9.51 -39.65 -0.38 -6.57 16 14 C 0.16 2.73 11.46 -16.66 -0.19 2.54 16 15 N -0.34 -6.18 3.63 -62.23 -0.23 -6.41 16 16 C 0.25 5.18 6.19 -5.19 -0.03 5.15 16 17 C -0.56 -13.13 9.39 -34.44 -0.32 -13.45 16 18 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 19 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -22.26 13.29 55.43 0.74 -21.52 16 21 Si 0.91 19.05 29.54 -169.99 -5.02 14.03 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 N -0.47 -8.18 7.37 31.32 0.23 -7.95 16 26 H 0.45 6.85 8.96 -182.55 -1.64 5.22 16 27 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.76 7.96 -51.93 -0.41 0.34 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.22 8.03 -51.93 -0.42 0.80 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.18 3.60 5.77 -52.48 -0.30 3.29 16 40 H 0.19 2.46 8.06 -52.49 -0.42 2.04 16 41 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -28.84 365.46 -9.53 -38.37 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -8.22 Total: 7.51 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.72 Total: 3.41 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.62 Total: -49.64 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.70 Total: -19.19 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.84 -9.53 -38.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528612708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.590 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds