Wall clock time and date at job start Fri Apr 10 2020 20:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47290 * 175.06517 * 3 2 1 5 5 H 1.09000 * 109.47068 * 305.27282 * 4 3 2 6 6 O 1.42901 * 109.47285 * 65.27476 * 4 3 2 7 7 C 1.42902 * 114.00183 * 209.39691 * 6 4 3 8 8 C 1.53001 * 109.46845 * 184.82720 * 7 6 4 9 9 C 1.50699 * 109.47476 * 185.27707 * 4 3 2 10 10 O 1.21589 * 119.99846 * 245.00318 * 9 4 3 11 11 N 1.32914 * 120.00031 * 64.99608 * 9 4 3 12 12 C 1.33302 * 119.99738 * 179.97438 * 11 9 4 13 13 C 1.40983 * 126.36117 * 359.96697 * 12 11 9 14 14 C 1.35125 * 108.24238 * 180.02562 * 13 12 11 15 15 N 1.36337 * 108.89632 * 359.74443 * 14 13 12 16 16 C 1.46502 * 125.86451 * 180.24699 * 15 14 13 17 17 C 1.50697 * 109.46965 * 275.18504 * 16 15 14 18 18 H 1.07996 * 120.00250 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99952 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99685 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00081 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47018 * 90.00494 * 21 19 17 23 23 H 1.48499 * 109.46997 * 210.00640 * 21 19 17 24 24 H 1.48501 * 109.47113 * 330.00328 * 21 19 17 25 25 N 1.37282 * 126.35592 * 180.02562 * 12 11 9 26 26 H 0.97002 * 126.34463 * 359.94440 * 25 12 11 27 27 H 1.09010 * 109.46949 * 300.00123 * 1 2 3 28 28 H 1.09002 * 109.46837 * 59.99765 * 1 2 3 29 29 H 1.08991 * 109.47123 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47004 * 239.99842 * 2 1 3 31 31 H 1.09002 * 109.46951 * 119.99691 * 2 1 3 32 32 H 1.09004 * 109.47462 * 55.06644 * 3 2 1 33 33 H 1.08998 * 109.47389 * 295.06417 * 3 2 1 34 34 H 1.09001 * 109.46839 * 304.82832 * 7 6 4 35 35 H 1.08995 * 109.47254 * 64.82619 * 7 6 4 36 36 H 1.08992 * 109.47332 * 299.99910 * 8 7 6 37 37 H 1.09000 * 109.46870 * 60.00165 * 8 7 6 38 38 H 1.09000 * 109.46842 * 179.97438 * 8 7 6 39 39 H 1.08005 * 125.87754 * 0.02562 * 13 12 11 40 40 H 1.08000 * 125.55038 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.46685 * 35.17991 * 16 15 14 42 42 H 1.08998 * 109.46933 * 155.18078 * 16 15 14 43 43 H 0.97000 * 119.99858 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 0.1241 5 1 3.8583 0.8756 1.0065 6 8 4.1384 0.8465 -1.0403 7 6 5.3902 0.1989 -0.8047 8 6 5.9659 -0.2967 -2.1329 9 6 4.0567 2.8628 0.2544 10 8 4.7513 3.3480 -0.6176 11 7 3.7310 3.5836 1.3226 12 6 4.1665 4.8382 1.4381 13 6 4.9754 5.5306 0.5141 14 6 5.1971 6.7740 0.9945 15 7 4.5552 6.9063 2.1900 16 6 4.5442 8.1066 3.0300 17 6 5.7715 8.1191 3.9044 18 1 6.4878 7.3134 3.8411 19 6 5.9798 9.1592 4.7852 20 7 5.1072 10.1401 4.8626 21 14 7.5008 9.1744 5.8696 22 1 8.6033 9.8776 5.1660 23 1 7.1955 9.8792 7.1405 24 1 7.9125 7.7784 6.1643 25 7 3.9114 5.6955 2.4795 26 1 3.3802 5.5009 3.2675 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6063 1.9813 0.8425 33 1 1.7507 1.9302 -0.9309 34 1 6.0843 0.9049 -0.3487 35 1 5.2409 -0.6479 -0.1349 36 1 5.2718 -1.0026 -2.5888 37 1 6.1152 0.5501 -2.8027 38 1 6.9210 -0.7903 -1.9532 39 1 5.3529 5.1352 -0.4174 40 1 5.7837 7.5395 0.5085 41 1 4.5405 8.9934 2.3962 42 1 3.6519 8.1037 3.6560 43 1 5.2536 10.8716 5.4825 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528612708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:04 Heat of formation + Delta-G solvation = -16.064998 kcal Electronic energy + Delta-G solvation = -23445.887371 eV Core-core repulsion = 19913.871479 eV Total energy + Delta-G solvation = -3532.015892 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.38206 -40.54474 -38.47370 -35.93110 -35.79345 -34.59451 -32.57719 -32.54616 -32.16985 -30.07917 -28.41080 -25.90229 -24.67418 -23.75728 -22.97368 -22.71225 -21.97824 -20.57499 -18.92532 -18.46358 -17.94034 -17.28600 -16.76392 -16.54802 -16.38768 -16.11660 -15.68462 -15.64318 -15.25649 -14.85091 -14.51302 -14.37150 -14.25985 -13.98428 -13.70462 -13.52241 -13.14562 -12.99251 -12.88770 -12.75539 -12.65669 -12.34538 -12.17169 -12.10188 -11.93427 -11.80202 -11.44460 -11.25876 -11.21997 -10.78949 -10.55248 -10.40006 -9.73947 -8.63820 -8.30299 -6.58138 0.13484 0.54136 1.37632 1.41592 1.47791 1.50926 2.29239 2.58787 2.77160 2.85332 2.93822 3.47751 3.86667 3.99652 4.05780 4.18457 4.25740 4.28956 4.33829 4.44052 4.45592 4.48499 4.73689 4.79165 4.82673 4.83811 4.89777 4.94997 5.03702 5.06555 5.12063 5.21837 5.25699 5.30621 5.39504 5.49349 5.52510 5.67877 5.92357 6.05488 6.24108 6.40730 6.59498 6.82243 7.15858 7.83751 8.64565 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.021526 B = 0.002940 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.416771 B = 9521.221567 C =10153.008911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.095 4.095 4 C 0.104 3.896 5 H 0.089 0.911 6 O -0.379 6.379 7 C 0.051 3.949 8 C -0.142 4.142 9 C 0.457 3.543 10 O -0.605 6.605 11 N -0.705 5.705 12 C 0.453 3.547 13 C -0.346 4.346 14 C 0.180 3.820 15 N -0.342 5.342 16 C 0.266 3.734 17 C -0.567 4.567 18 H 0.060 0.940 19 C 0.031 3.969 20 N -0.912 5.912 21 Si 0.964 3.036 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.275 1.275 25 N -0.459 5.459 26 H 0.454 0.546 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.026 0.974 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.171 0.829 40 H 0.226 0.774 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.457 -13.800 -6.437 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.133 4.133 4 C 0.043 3.957 5 H 0.106 0.894 6 O -0.297 6.297 7 C -0.025 4.025 8 C -0.199 4.199 9 C 0.243 3.757 10 O -0.488 6.488 11 N -0.471 5.471 12 C 0.204 3.796 13 C -0.378 4.378 14 C 0.034 3.966 15 N -0.127 5.127 16 C 0.149 3.851 17 C -0.605 4.605 18 H 0.078 0.922 19 C -0.171 4.171 20 N -0.550 5.550 21 Si 0.789 3.211 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.200 1.200 25 N -0.182 5.182 26 H 0.302 0.698 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.189 0.811 40 H 0.242 0.758 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.805 -13.540 -6.123 15.340 hybrid contribution 1.083 0.669 0.863 1.538 sum -2.722 -12.871 -5.260 14.169 Atomic orbital electron populations 1.21753 0.94727 1.02302 1.01856 1.21442 0.96574 0.94629 1.02454 1.21511 0.90066 0.99212 1.02502 1.21652 0.95562 0.89255 0.89254 0.89367 1.87904 1.36475 1.72163 1.33189 1.22657 0.84907 0.95381 0.99557 1.21701 1.01462 1.01239 0.95512 1.22134 0.79559 0.91686 0.82359 1.90506 1.39797 1.73205 1.45327 1.68792 1.42357 1.04360 1.31619 1.19469 0.87010 0.88840 0.84301 1.22372 1.13540 0.95590 1.06340 1.23431 0.90824 0.98963 0.83352 1.47964 1.41545 1.03924 1.19259 1.19806 0.98279 0.77254 0.89763 1.21592 1.07644 1.08477 1.22814 0.92216 1.25589 0.99469 0.94464 0.97621 1.69956 1.36542 1.10900 1.37601 0.85452 0.79272 0.78244 0.78156 1.19486 1.20514 1.19951 1.44569 1.47721 1.03905 1.21971 0.69754 0.92518 0.93039 0.91418 0.91800 0.91287 0.89710 0.92864 0.95569 0.91499 0.91072 0.93384 0.89107 0.81142 0.75791 0.90879 0.93607 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.91 71.98 0.71 -1.87 16 2 C -0.11 -2.35 5.78 30.59 0.18 -2.18 16 3 C -0.10 -2.58 4.89 30.59 0.15 -2.43 16 4 C 0.10 3.30 2.58 29.85 0.08 3.38 16 5 H 0.09 2.54 7.83 -2.39 -0.02 2.52 16 6 O -0.38 -12.17 9.16 -130.02 -1.19 -13.36 16 7 C 0.05 1.36 6.44 71.98 0.46 1.82 16 8 C -0.14 -3.02 10.28 71.98 0.74 -2.28 16 9 C 0.46 18.23 6.98 87.94 0.61 18.84 16 10 O -0.60 -27.39 13.41 14.97 0.20 -27.19 16 11 N -0.70 -27.66 10.37 -309.88 -3.21 -30.88 16 12 C 0.45 17.44 8.07 133.83 1.08 18.52 16 13 C -0.35 -12.87 9.51 22.23 0.21 -12.66 16 14 C 0.18 5.78 11.46 83.28 0.95 6.73 16 15 N -0.34 -12.12 3.63 -350.80 -1.27 -13.39 16 16 C 0.27 10.61 6.19 85.63 0.53 11.14 16 17 C -0.57 -26.02 9.39 25.60 0.24 -25.78 16 18 H 0.06 2.83 7.81 -2.91 -0.02 2.81 16 19 C 0.03 1.47 5.46 84.66 0.46 1.93 16 20 N -0.91 -45.11 13.29 21.45 0.28 -44.82 16 21 Si 0.96 38.27 29.54 68.60 2.03 40.29 16 22 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 23 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 N -0.46 -15.89 7.37 -54.81 -0.40 -16.30 16 26 H 0.45 13.75 8.96 -213.28 -1.91 11.84 16 27 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.36 7.96 -2.39 -0.02 1.34 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 2.33 8.03 -2.38 -0.02 2.31 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.03 0.79 8.11 -2.39 -0.02 0.78 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.17 6.87 5.77 -2.91 -0.02 6.85 16 40 H 0.23 5.32 8.06 -2.91 -0.02 5.30 16 41 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 43 H 0.27 12.92 8.31 -92.71 -0.77 12.14 16 Total: -1.00 -61.09 365.46 1.93 -59.17 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: -0.91 Total: 31.31 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 6.41 Total: 15.17 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -4.61 Total: -105.39 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.99 Total: -40.55 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.29 kcal Total: -61.09 1.93 -59.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528612708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.101 kcal (2) G-P(sol) polarization free energy of solvation -61.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds