Wall clock time and date at job start Fri Apr 10 2020 20:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47857 * 2 1 4 4 N 1.46908 * 109.47350 * 120.00394 * 2 1 3 5 5 C 1.46897 * 111.00008 * 274.99794 * 4 2 1 6 6 C 1.52998 * 109.47444 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47268 * 300.00315 * 6 5 4 8 8 C 1.53008 * 109.46762 * 59.99857 * 6 5 4 9 9 C 1.52993 * 109.47576 * 179.97438 * 6 5 4 10 10 C 1.50691 * 109.47615 * 180.02562 * 9 6 5 11 11 H 1.08004 * 119.99977 * 0.02562 * 10 9 6 12 12 C 1.37870 * 120.00425 * 180.02562 * 10 9 6 13 13 N 1.31519 * 120.00080 * 0.02562 * 12 10 9 14 14 Si 1.86810 * 120.00269 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47293 * 89.99856 * 14 12 10 16 16 H 1.48497 * 109.46977 * 210.00190 * 14 12 10 17 17 H 1.48504 * 109.46715 * 329.99831 * 14 12 10 18 18 C 1.50703 * 109.47111 * 239.99892 * 2 1 3 19 19 C 1.38174 * 119.98772 * 265.00707 * 18 2 1 20 20 C 1.38683 * 119.96640 * 180.27585 * 19 18 2 21 21 O 1.35955 * 120.02610 * 179.69409 * 20 19 18 22 22 C 1.38727 * 119.94381 * 359.44037 * 20 19 18 23 23 C 1.38131 * 119.96757 * 0.58237 * 22 20 19 24 24 C 1.38434 * 119.98149 * 85.02310 * 18 2 1 25 25 F 1.35096 * 119.96950 * 359.97438 * 24 18 2 26 26 H 1.08994 * 109.47247 * 59.99456 * 1 2 3 27 27 H 1.09002 * 109.47082 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46757 * 299.99986 * 1 2 3 29 29 H 1.00904 * 110.99349 * 38.94974 * 4 2 1 30 30 H 1.08998 * 109.47004 * 300.00009 * 5 4 2 31 31 H 1.09007 * 109.47290 * 59.99786 * 5 4 2 32 32 H 1.09005 * 109.47405 * 59.99395 * 7 6 5 33 33 H 1.08996 * 109.47450 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.46850 * 300.00094 * 7 6 5 35 35 H 1.08998 * 109.46889 * 60.00053 * 8 6 5 36 36 H 1.08996 * 109.46655 * 180.02562 * 8 6 5 37 37 H 1.08997 * 109.46812 * 300.00233 * 8 6 5 38 38 H 1.08998 * 109.47089 * 300.00568 * 9 6 5 39 39 H 1.09006 * 109.46894 * 59.99742 * 9 6 5 40 40 H 0.96999 * 119.99925 * 180.02562 * 13 12 10 41 41 H 1.08002 * 120.01230 * 359.97438 * 19 18 2 42 42 H 0.96702 * 113.99178 * 90.00025 * 21 20 19 43 43 H 1.07994 * 120.01951 * 180.28002 * 22 20 19 44 44 H 1.07999 * 119.98838 * 179.68116 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2224 2.3469 6 6 2.5952 -0.5334 3.5745 7 6 1.6453 -1.6892 3.8952 8 6 3.9923 -1.0865 3.2861 9 6 2.6612 0.4197 4.7694 10 6 3.1667 -0.3245 5.9783 11 1 3.4164 -1.3725 5.9019 12 6 3.3105 0.3324 7.1819 13 7 3.0061 1.6084 7.2752 14 14 3.9379 -0.5901 8.6804 15 1 5.4188 -0.4959 8.7355 16 1 3.3576 0.0089 9.9091 17 1 3.5357 -2.0166 8.5876 18 6 2.0323 -0.7104 -1.2305 19 6 2.3607 -2.0511 -1.1681 20 6 2.8284 -2.7031 -2.2993 21 8 3.1577 -4.0207 -2.2378 22 6 2.9548 -2.0109 -3.4949 23 6 2.6262 -0.6706 -3.5543 24 6 2.1648 -0.0194 -2.4226 25 9 1.8432 1.2914 -2.4822 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.4495 -1.4980 1.4099 30 1 2.7589 1.0460 2.1182 31 1 1.0871 0.6162 2.5526 32 1 1.5986 -2.3682 3.0438 33 1 2.0102 -2.2273 4.7700 34 1 0.6500 -1.2951 4.1006 35 1 4.6690 -0.2631 3.0575 36 1 4.3573 -1.6253 4.1604 37 1 3.9456 -1.7654 2.4346 38 1 3.3381 1.2429 4.5406 39 1 1.6661 0.8142 4.9750 40 1 3.1077 2.0706 8.1219 41 1 2.2578 -2.5898 -0.2377 42 1 2.4247 -4.6190 -2.4373 43 1 3.3145 -2.5185 -4.3776 44 1 2.7294 -0.1302 -4.4837 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872071821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:18:38 Heat of formation + Delta-G solvation = -81.375196 kcal Electronic energy + Delta-G solvation = -24004.960240 eV Core-core repulsion = 20450.192324 eV Total energy + Delta-G solvation = -3554.767916 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.00529 -39.96923 -38.12456 -36.80788 -35.18793 -32.47056 -31.00777 -29.80693 -28.69258 -26.87791 -26.32818 -25.31536 -24.05691 -22.91576 -22.11786 -20.82743 -18.53067 -17.88001 -17.56383 -16.90868 -16.23183 -15.96463 -15.44174 -15.01500 -14.85157 -14.44581 -14.26406 -14.14123 -13.84600 -13.32250 -13.22147 -13.03549 -12.89083 -12.66947 -12.16368 -11.99289 -11.86995 -11.71535 -11.62992 -11.34641 -10.98247 -10.88564 -10.75323 -10.63289 -10.49291 -10.25562 -10.11863 -9.68839 -9.16626 -9.00775 -8.83114 -8.61460 -8.30827 -8.16364 -5.95394 -3.95540 0.86272 1.00964 3.24542 3.34209 3.40730 3.43260 3.92959 4.06734 4.25438 4.49326 4.52137 4.67268 4.94255 5.09739 5.10805 5.22243 5.40439 5.48494 5.56299 5.63941 5.72489 5.74073 5.83111 5.90636 5.95773 6.00933 6.14233 6.17171 6.27177 6.32878 6.50046 6.54399 6.66352 6.79041 6.83721 7.19326 7.21172 7.26795 7.36223 7.41158 7.59976 7.71217 7.86044 8.04855 8.49121 9.09858 9.67328 11.16272 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.024074 B = 0.003246 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.792274 B = 8623.621324 C = 9255.968824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.119 3.881 3 H 0.091 0.909 4 N -0.678 5.678 5 C 0.070 3.930 6 C -0.058 4.058 7 C -0.128 4.128 8 C -0.116 4.116 9 C 0.034 3.966 10 C -0.507 4.507 11 H 0.059 0.941 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.887 3.113 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.274 1.274 18 C -0.079 4.079 19 C -0.092 4.092 20 C 0.093 3.907 21 O -0.495 6.495 22 C -0.126 4.126 23 C -0.140 4.140 24 C 0.089 3.911 25 F -0.138 7.138 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.340 0.660 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.032 0.968 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.015 0.985 39 H 0.012 0.988 40 H 0.259 0.741 41 H 0.144 0.856 42 H 0.389 0.611 43 H 0.134 0.866 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 -7.333 -22.028 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.008 3.992 3 H 0.109 0.891 4 N -0.309 5.309 5 C -0.058 4.058 6 C -0.058 4.058 7 C -0.186 4.186 8 C -0.174 4.174 9 C -0.003 4.003 10 C -0.545 4.545 11 H 0.077 0.923 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.716 3.284 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.081 4.081 19 C -0.111 4.111 20 C 0.048 3.952 21 O -0.305 6.305 22 C -0.145 4.145 23 C -0.159 4.159 24 C 0.069 3.931 25 F -0.116 7.116 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.160 0.840 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.068 0.932 41 H 0.162 0.838 42 H 0.244 0.756 43 H 0.152 0.848 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.711 -6.841 -21.898 23.240 hybrid contribution -1.047 -0.177 0.963 1.434 sum -4.758 -7.018 -20.935 22.587 Atomic orbital electron populations 1.22449 0.95929 1.02342 1.02733 1.20347 0.92830 0.97710 0.88269 0.89054 1.60671 1.56465 1.10084 1.03696 1.22161 0.99043 0.94889 0.89721 1.20632 0.94937 0.96137 0.94129 1.21769 0.98713 0.97825 1.00278 1.21604 0.95889 0.99910 0.99965 1.19116 0.96862 0.93666 0.90701 1.21233 1.42817 0.96336 0.94108 0.92290 1.25016 0.95863 0.94843 0.98873 1.69969 1.49188 1.08996 1.25608 0.86666 0.79029 0.80010 0.82725 1.20774 1.21414 1.19943 1.19837 1.00326 0.94194 0.93744 1.21184 0.97208 0.93836 0.98840 1.18487 0.99203 0.84937 0.92571 1.84887 1.39453 1.13446 1.92693 1.21213 1.01193 0.94170 0.97884 1.20929 1.02003 0.95060 0.97898 1.17542 1.02421 0.78516 0.94632 1.91486 1.90504 1.32671 1.96984 0.92106 0.92274 0.91586 0.84039 0.91437 0.95510 0.94914 0.91668 0.94086 0.94163 0.92689 0.93896 0.96685 0.96919 0.93174 0.83799 0.75568 0.84767 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 9.14 37.15 0.34 -1.57 16 2 C 0.12 1.48 2.57 -68.86 -0.18 1.31 16 3 H 0.09 1.25 7.44 -51.93 -0.39 0.86 16 4 N -0.68 -9.41 4.46 -107.95 -0.48 -9.89 16 5 C 0.07 1.18 4.45 -3.83 -0.02 1.16 16 6 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 7 C -0.13 -2.32 7.89 37.16 0.29 -2.03 16 8 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 9 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 10 C -0.51 -13.82 7.65 -34.45 -0.26 -14.09 16 11 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 12 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 14 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.08 -0.94 5.06 -104.57 -0.53 -1.47 16 19 C -0.09 -1.03 9.26 -39.44 -0.37 -1.40 16 20 C 0.09 0.94 6.70 -39.24 -0.26 0.68 16 21 O -0.49 -4.51 13.51 -19.60 -0.26 -4.77 16 22 C -0.13 -1.14 9.99 -39.44 -0.39 -1.53 16 23 C -0.14 -1.34 10.02 -39.53 -0.40 -1.73 16 24 C 0.09 1.02 7.24 -39.42 -0.29 0.73 16 25 F -0.14 -1.70 16.56 2.25 0.04 -1.66 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 28 H 0.07 0.75 7.45 -51.93 -0.39 0.37 16 29 H 0.34 4.40 5.94 -39.29 -0.23 4.16 16 30 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 31 H 0.03 0.45 7.44 -51.93 -0.39 0.06 16 32 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 33 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 37 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 38 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.14 1.61 6.89 -52.49 -0.36 1.25 16 42 H 0.39 1.56 9.06 45.56 0.41 1.97 16 43 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 355.44 15.07 5.36 5.36 Total: -1.00 -30.88 355.44 -7.70 -38.58 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.00 Total: 2.88 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -2.06 Total: -20.93 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.25 Total: -36.05 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.26 Total: -4.77 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.88 -7.70 -38.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872071821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.796 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds