Wall clock time and date at job start Fri Apr 10 2020 20:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53000 * 109.47293 * 2 1 4 4 C 1.53002 * 109.47088 * 120.00197 * 2 1 3 5 5 N 1.46898 * 109.46963 * 171.64209 * 4 2 1 6 6 C 1.46898 * 111.00318 * 313.19899 * 5 4 2 7 7 C 1.50702 * 109.47158 * 299.42046 * 6 5 4 8 8 H 1.07997 * 119.99905 * 4.79958 * 7 6 5 9 9 C 1.37872 * 119.99838 * 184.79843 * 7 6 5 10 10 N 1.31520 * 119.99990 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00399 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47226 * 89.99833 * 11 9 7 13 13 H 1.48499 * 109.47193 * 210.00062 * 11 9 7 14 14 H 1.48509 * 109.46807 * 330.00150 * 11 9 7 15 15 C 1.46909 * 111.00163 * 77.15784 * 5 4 2 16 16 C 1.53001 * 109.46987 * 76.72219 * 15 5 4 17 17 H 1.08992 * 109.47126 * 53.77122 * 16 15 5 18 18 O 1.42897 * 109.47135 * 293.76442 * 16 15 5 19 19 C 1.50696 * 109.46544 * 173.76910 * 16 15 5 20 20 C 1.38272 * 119.98913 * 264.99809 * 19 16 15 21 21 C 1.38218 * 120.05493 * 179.97438 * 20 19 16 22 22 C 1.38221 * 120.02616 * 0.02562 * 21 20 19 23 23 C 1.38440 * 119.97214 * 359.97438 * 22 21 20 24 24 F 1.35099 * 120.02516 * 180.02562 * 23 22 21 25 25 C 1.38175 * 119.98977 * 84.97874 * 19 16 15 26 26 H 1.09001 * 109.47278 * 300.00342 * 1 2 3 27 27 H 1.09006 * 109.47150 * 60.00030 * 1 2 3 28 28 H 1.09000 * 109.47493 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47278 * 239.99658 * 2 1 3 30 30 H 1.08994 * 109.47115 * 328.98193 * 3 2 1 31 31 H 1.08999 * 109.47261 * 88.98855 * 3 2 1 32 32 H 1.09005 * 109.46873 * 208.98596 * 3 2 1 33 33 H 1.08996 * 109.47050 * 51.64090 * 4 2 1 34 34 H 1.08999 * 109.47219 * 291.64338 * 4 2 1 35 35 H 1.08999 * 109.47258 * 59.42224 * 6 5 4 36 36 H 1.09002 * 109.47011 * 179.41782 * 6 5 4 37 37 H 0.96999 * 119.99665 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.46429 * 316.72303 * 15 5 4 39 39 H 1.08999 * 109.47022 * 196.72187 * 15 5 4 40 40 H 0.96703 * 114.00319 * 294.70709 * 18 16 15 41 41 H 1.07997 * 119.97213 * 359.70350 * 20 19 16 42 42 H 1.08001 * 119.98972 * 179.97438 * 21 20 19 43 43 H 1.07993 * 120.01683 * 179.97438 * 22 21 20 44 44 H 1.08001 * 120.01300 * 0.04391 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.4950 -0.8981 1.1528 6 6 3.8764 -1.4128 -0.1692 7 6 3.2228 -2.7518 -0.3946 8 1 2.5270 -3.1424 0.3331 9 6 3.5131 -3.4781 -1.5300 10 7 2.9423 -4.6465 -1.7270 11 14 4.7171 -2.8029 -2.7885 12 1 6.0912 -3.2526 -2.4500 13 1 4.3521 -3.3002 -4.1393 14 1 4.6650 -1.3187 -2.7766 15 6 4.1988 0.3561 1.4526 16 6 4.1998 0.5915 2.9644 17 1 4.6057 -0.2855 3.4683 18 8 2.8623 0.8216 3.4116 19 6 5.0504 1.7935 3.2849 20 6 6.3756 1.6269 3.6426 21 6 7.1571 2.7285 3.9363 22 6 6.6144 3.9982 3.8732 23 6 5.2877 4.1662 3.5152 24 9 4.7563 5.4067 3.4527 25 6 4.5058 3.0618 3.2208 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.3308 2.0786 -0.5295 31 1 2.1440 1.7911 1.0275 32 1 3.0086 1.4853 -0.4980 33 1 1.5597 -1.6967 1.3270 34 1 1.8037 -0.1286 2.1329 35 1 3.5490 -0.7144 -0.9393 36 1 4.9596 -1.5245 -0.2169 37 1 3.1463 -5.1573 -2.5260 38 1 3.6927 1.1842 0.9562 39 1 5.2261 0.2909 1.0943 40 1 2.4660 1.6331 3.0659 41 1 6.7992 0.6350 3.6968 42 1 8.1919 2.5971 4.2160 43 1 7.2250 4.8587 4.1031 44 1 3.4706 3.1918 2.9417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916970521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:24 Heat of formation + Delta-G solvation = -56.718251 kcal Electronic energy + Delta-G solvation = -24710.809981 eV Core-core repulsion = 21157.111271 eV Total energy + Delta-G solvation = -3553.698711 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.08526 -39.96000 -38.37875 -36.28687 -33.41012 -32.41789 -31.69035 -30.78449 -28.89727 -27.25685 -26.84111 -24.88777 -23.07129 -22.73285 -21.29602 -20.74180 -19.01365 -18.04987 -16.80027 -16.73401 -16.37335 -15.89506 -15.77769 -15.53822 -15.05117 -14.68140 -14.23262 -14.05216 -13.94861 -13.39392 -13.23759 -13.11468 -12.61177 -12.46260 -12.24032 -12.15582 -12.07323 -11.70460 -11.58682 -11.32835 -11.16895 -10.99810 -10.79325 -10.72549 -10.49175 -10.13876 -10.03307 -9.83716 -9.39255 -9.23249 -9.06802 -8.82085 -8.56033 -7.16583 -6.04061 -4.00689 0.93457 0.97236 3.27020 3.34239 3.35216 3.36003 3.97633 4.35373 4.41777 4.45049 4.52486 4.75309 4.93810 5.07961 5.13029 5.28741 5.35389 5.42920 5.47450 5.50351 5.51492 5.60115 5.81512 5.85308 5.90755 5.94042 6.01084 6.10109 6.17021 6.21742 6.24463 6.34830 6.40316 6.58969 6.65345 6.66421 6.68295 6.98631 7.07147 7.19381 7.61281 7.63116 7.96428 8.13147 8.68009 9.05761 9.57976 11.09047 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.017646 B = 0.004368 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.416585 B = 6408.769338 C = 7115.448614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 C -0.145 4.145 4 C 0.060 3.940 5 N -0.517 5.517 6 C 0.157 3.843 7 C -0.503 4.503 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.871 3.129 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.269 1.269 15 C -0.003 4.003 16 C 0.152 3.848 17 H 0.119 0.881 18 O -0.542 6.542 19 C -0.077 4.077 20 C -0.119 4.119 21 C -0.088 4.088 22 C -0.160 4.160 23 C 0.100 3.900 24 F -0.142 7.142 25 C -0.150 4.150 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.084 0.916 35 H -0.006 1.006 36 H 0.019 0.981 37 H 0.263 0.737 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.364 0.636 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.410 17.303 9.618 20.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C -0.202 4.202 4 C -0.067 4.067 5 N -0.239 5.239 6 C 0.031 3.969 7 C -0.541 4.541 8 H 0.099 0.901 9 C -0.132 4.132 10 N -0.540 5.540 11 Si 0.699 3.301 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.194 1.194 15 C -0.132 4.132 16 C 0.093 3.907 17 H 0.136 0.864 18 O -0.348 6.348 19 C -0.078 4.078 20 C -0.137 4.137 21 C -0.106 4.106 22 C -0.179 4.179 23 C 0.081 3.919 24 F -0.120 7.120 25 C -0.169 4.169 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.012 0.988 36 H 0.037 0.963 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.213 0.787 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.635 16.270 10.146 19.726 hybrid contribution 0.416 1.600 -1.826 2.464 sum 5.051 17.870 8.319 20.349 Atomic orbital electron populations 1.21726 0.95839 1.01671 1.00166 1.21889 0.95652 0.95334 1.03188 1.22149 1.00362 0.97480 1.00184 1.22450 0.87851 1.00700 0.95737 1.62101 1.06019 1.23578 1.32185 1.20277 0.95691 0.95900 0.84997 1.21015 1.26084 1.00832 1.06215 0.90120 1.24882 0.95927 0.94690 0.97728 1.69892 1.43758 1.12573 1.27727 0.86927 0.82150 0.79669 0.81378 1.20238 1.21318 1.19420 1.23257 1.00392 0.95193 0.94343 1.21032 0.80721 0.93514 0.95478 0.86371 1.86688 1.27628 1.46231 1.74249 1.20633 0.95389 0.95008 0.96746 1.21149 0.93280 0.99737 0.99550 1.21024 1.00111 0.91418 0.98050 1.21136 0.93839 0.99036 1.03911 1.17640 0.92522 0.79491 1.02287 1.91498 1.86677 1.39767 1.94079 1.20846 1.00687 0.91417 1.03941 0.93625 0.93779 0.92436 0.88805 0.93468 0.93387 0.92956 0.90723 0.89849 0.98832 0.96325 0.92751 0.91920 0.91124 0.78746 0.84796 0.84889 0.84913 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.02 37.15 0.34 -1.75 16 2 C -0.14 -2.44 2.39 -90.62 -0.22 -2.65 16 3 C -0.14 -2.08 7.70 37.16 0.29 -1.79 16 4 C 0.06 1.12 4.43 -3.82 -0.02 1.10 16 5 N -0.52 -10.14 4.67 -236.06 -1.10 -11.25 16 6 C 0.16 3.66 3.21 -4.98 -0.02 3.64 16 7 C -0.50 -13.85 8.82 -34.44 -0.30 -14.15 16 8 H 0.08 2.44 6.87 -52.49 -0.36 2.08 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 11 Si 0.87 21.25 27.38 -169.99 -4.65 16.60 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.32 6.68 56.52 0.38 -5.94 16 15 C 0.00 -0.05 4.48 -3.82 -0.02 -0.06 16 16 C 0.15 2.01 3.44 -27.88 -0.10 1.91 16 17 H 0.12 1.67 8.05 -51.93 -0.42 1.26 16 18 O -0.54 -7.19 10.31 -35.23 -0.36 -7.56 16 19 C -0.08 -0.88 5.00 -104.63 -0.52 -1.40 16 20 C -0.12 -1.22 9.68 -39.58 -0.38 -1.60 16 21 C -0.09 -0.78 10.04 -39.59 -0.40 -1.18 16 22 C -0.16 -1.52 10.03 -39.51 -0.40 -1.91 16 23 C 0.10 1.10 7.30 -39.42 -0.29 0.81 16 24 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 25 C -0.15 -1.64 9.29 -39.51 -0.37 -2.01 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.98 5.46 -51.93 -0.28 1.70 16 30 H 0.05 0.61 7.83 -51.93 -0.41 0.21 16 31 H 0.05 0.59 5.37 -51.93 -0.28 0.31 16 32 H 0.05 0.80 6.69 -51.93 -0.35 0.45 16 33 H 0.07 1.60 6.90 -51.93 -0.36 1.24 16 34 H 0.08 1.37 4.68 -51.93 -0.24 1.13 16 35 H -0.01 -0.13 5.04 -51.93 -0.26 -0.40 16 36 H 0.02 0.44 7.12 -51.93 -0.37 0.07 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.06 0.92 3.06 -51.93 -0.16 0.76 16 39 H 0.07 1.12 7.80 -51.93 -0.40 0.71 16 40 H 0.36 3.80 5.88 45.56 0.27 4.07 16 41 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 44 H 0.13 1.25 6.51 -52.49 -0.34 0.91 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -30.50 338.93 -8.36 -38.86 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.66 Total: 5.51 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -2.50 Total: -19.19 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.33 Total: -37.73 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.36 Total: -7.56 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.65 Total: 16.60 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.50 -8.36 -38.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916970521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.860 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds