Wall clock time and date at job start Fri Apr 10 2020 20:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47117 * 2 1 4 4 N 1.46906 * 109.47116 * 184.68282 * 3 2 1 5 5 C 1.46891 * 111.00034 * 300.12204 * 4 3 2 6 6 C 1.50707 * 109.47206 * 288.97480 * 5 4 3 7 7 H 1.07995 * 119.99511 * 4.64675 * 6 5 4 8 8 C 1.37876 * 119.99804 * 184.64868 * 6 5 4 9 9 N 1.31514 * 120.00409 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99831 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46859 * 90.00003 * 10 8 6 12 12 H 1.48495 * 109.47045 * 210.00430 * 10 8 6 13 13 H 1.48496 * 109.46908 * 330.00403 * 10 8 6 14 14 C 1.46896 * 110.99812 * 64.07733 * 4 3 2 15 15 C 1.50700 * 109.47364 * 76.34093 * 14 4 3 16 16 C 1.38244 * 119.96005 * 95.61557 * 15 14 4 17 17 C 1.38133 * 120.08195 * 180.02562 * 16 15 14 18 18 C 1.38770 * 119.99551 * 359.97438 * 17 16 15 19 19 O 1.35897 * 120.04471 * 179.97438 * 18 17 16 20 20 C 1.42900 * 117.00150 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47231 * 180.02562 * 20 19 18 22 22 C 1.38675 * 119.91351 * 0.26243 * 18 17 16 23 23 C 1.38383 * 119.91536 * 359.50936 * 22 18 17 24 24 F 1.35100 * 119.99808 * 180.20870 * 23 22 18 25 25 H 1.08999 * 109.46756 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46906 * 300.00258 * 1 2 3 27 27 H 1.08994 * 109.47328 * 60.00359 * 1 2 3 28 28 H 1.09005 * 109.47186 * 239.99972 * 2 1 3 29 29 H 1.09003 * 109.47503 * 119.99668 * 2 1 3 30 30 H 1.08998 * 109.47530 * 64.68183 * 3 2 1 31 31 H 1.09002 * 109.46976 * 304.67933 * 3 2 1 32 32 H 1.09006 * 109.47405 * 48.97404 * 5 4 3 33 33 H 1.08996 * 109.47563 * 168.96917 * 5 4 3 34 34 H 0.96999 * 120.00353 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47416 * 316.33849 * 14 4 3 36 36 H 1.08999 * 109.47063 * 196.33900 * 14 4 3 37 37 H 1.08000 * 119.96117 * 359.97344 * 16 15 14 38 38 H 1.08000 * 120.00269 * 179.97438 * 17 16 15 39 39 H 1.09001 * 109.46620 * 300.00268 * 20 19 18 40 40 H 1.08999 * 109.46859 * 60.00119 * 20 19 18 41 41 H 1.09001 * 109.46882 * 299.99882 * 21 20 19 42 42 H 1.08999 * 109.46879 * 59.99834 * 21 20 19 43 43 H 1.09001 * 109.46585 * 179.97438 * 21 20 19 44 44 H 1.07989 * 120.03953 * 179.72019 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5047 1.4441 -0.1131 5 6 4.1201 0.7244 1.0099 6 6 3.9646 1.5343 2.2713 7 1 3.3947 2.4515 2.2572 8 6 4.5501 1.1042 3.4432 9 7 5.2446 -0.0124 3.4601 10 14 4.3579 2.1085 5.0066 11 1 3.1463 1.6587 5.7380 12 1 5.5539 1.9196 5.8663 13 1 4.2208 3.5455 4.6581 14 6 3.9340 0.8789 -1.3992 15 6 3.7149 1.8933 -2.4919 16 6 4.7548 2.7111 -2.8933 17 6 4.5567 3.6422 -3.8943 18 6 3.3128 3.7571 -4.4986 19 8 3.1166 4.6731 -5.4831 20 6 1.8106 4.7362 -6.0597 21 6 1.7828 5.8171 -7.1422 22 6 2.2685 2.9401 -4.0924 23 6 2.4722 2.0053 -3.0926 24 9 1.4571 1.2056 -2.6985 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7468 1.9316 0.9289 31 1 1.6098 1.9800 -0.8451 32 1 3.6298 -0.2410 1.1352 33 1 5.1796 0.5699 0.8056 34 1 5.6568 -0.3148 4.2845 35 1 3.3528 -0.0179 -1.6142 36 1 4.9921 0.6225 -1.3483 37 1 5.7230 2.6225 -2.4231 38 1 5.3698 4.2807 -4.2065 39 1 1.5623 3.7719 -6.5031 40 1 1.0829 4.9783 -5.2852 41 1 2.0313 6.7815 -6.6991 42 1 2.5106 5.5746 -7.9165 43 1 0.7867 5.8649 -7.5823 44 1 1.2984 3.0309 -4.5581 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237635607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:49 Heat of formation + Delta-G solvation = -61.489852 kcal Electronic energy + Delta-G solvation = -24243.374880 eV Core-core repulsion = 20689.469257 eV Total energy + Delta-G solvation = -3553.905623 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.79451 -40.12541 -38.10266 -36.73842 -32.77455 -32.57415 -31.77525 -30.66223 -29.98070 -26.98993 -25.91541 -24.35639 -23.62141 -22.13253 -22.00153 -21.32212 -19.19591 -18.57433 -16.80981 -16.39806 -16.26435 -16.01753 -15.71606 -15.23957 -14.79916 -14.43916 -14.37064 -14.03038 -13.84148 -13.54984 -13.39485 -13.13828 -12.87511 -12.71416 -12.30912 -11.95808 -11.86345 -11.58821 -11.44667 -11.26738 -11.12127 -10.95997 -10.85699 -10.78800 -10.63399 -10.62176 -10.41660 -9.84718 -9.63741 -9.19398 -8.82396 -8.39863 -8.03962 -7.12271 -5.98866 -3.99090 1.25839 1.38606 3.01001 3.34128 3.40284 3.45097 3.67374 4.35706 4.46655 4.63787 4.65079 4.82050 4.94966 5.00669 5.03217 5.18796 5.24649 5.35495 5.38844 5.48428 5.59007 5.61566 5.67434 5.72837 5.84692 5.91540 6.08595 6.11503 6.16664 6.21715 6.28191 6.41580 6.47621 6.55800 6.65558 6.79602 6.80346 7.01621 7.30384 7.31864 7.43865 7.84892 8.13150 8.25838 8.58612 9.08050 9.64415 11.11782 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.019510 B = 0.003730 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.830479 B = 7504.372719 C = 8124.182600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.160 4.160 3 C 0.061 3.939 4 N -0.528 5.528 5 C 0.188 3.812 6 C -0.500 4.500 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.086 3.914 15 C -0.124 4.124 16 C -0.036 4.036 17 C -0.162 4.162 18 C 0.146 3.854 19 O -0.314 6.314 20 C 0.052 3.948 21 C -0.151 4.151 22 C -0.249 4.249 23 C 0.140 3.860 24 F -0.130 7.130 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.057 0.943 32 H -0.002 1.002 33 H 0.030 0.970 34 H 0.260 0.740 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.504 6.101 -19.012 20.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.198 4.198 3 C -0.068 4.068 4 N -0.250 5.250 5 C 0.063 3.937 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.042 4.042 15 C -0.126 4.126 16 C -0.055 4.055 17 C -0.181 4.181 18 C 0.100 3.900 19 O -0.228 6.228 20 C -0.023 4.023 21 C -0.208 4.208 22 C -0.268 4.268 23 C 0.120 3.880 24 F -0.109 7.109 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.016 0.984 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.159 0.841 38 H 0.152 0.848 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.128 6.590 -18.924 20.955 hybrid contribution -0.814 -0.629 1.011 1.442 sum -6.942 5.961 -17.913 20.115 Atomic orbital electron populations 1.21633 0.96571 1.00546 1.01122 1.22123 0.95487 1.00288 1.01951 1.22176 0.88302 0.94638 1.01639 1.62391 1.06778 1.54919 1.00960 1.19847 0.94272 0.92369 0.87163 1.21138 1.31966 1.08054 0.92724 0.92037 1.24961 0.95395 0.95239 0.99010 1.69951 1.34737 1.21868 1.27483 0.86535 0.77414 0.80640 0.83067 1.20829 1.21323 1.19803 1.21001 1.01252 0.92874 0.89079 1.20003 0.92114 1.01288 0.99188 1.20782 0.99017 0.92029 0.93644 1.20452 0.95481 1.02537 0.99609 1.18602 0.93605 0.88933 0.88848 1.86073 1.33093 1.54455 1.49156 1.22791 0.83297 1.00063 0.96140 1.21771 1.02788 0.98496 0.97787 1.21022 1.00452 1.01679 1.03673 1.17241 0.84843 0.90809 0.95067 1.91484 1.58349 1.71554 1.89469 0.93725 0.93008 0.93362 0.92779 0.90935 0.90653 0.92440 0.98390 0.95188 0.93017 0.93892 0.90199 0.84129 0.84841 0.92037 0.91918 0.91454 0.91537 0.90431 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.91 37.16 0.37 -1.84 16 2 C -0.16 -2.98 4.71 -26.73 -0.13 -3.10 16 3 C 0.06 1.22 4.65 -3.82 -0.02 1.21 16 4 N -0.53 -11.43 4.58 -237.51 -1.09 -12.52 16 5 C 0.19 4.83 4.55 -4.98 -0.02 4.81 16 6 C -0.50 -14.04 8.66 -34.44 -0.30 -14.34 16 7 H 0.06 1.73 7.28 -52.49 -0.38 1.35 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 10 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.09 1.57 4.89 -4.98 -0.02 1.55 16 15 C -0.12 -2.00 5.27 -104.53 -0.55 -2.56 16 16 C -0.04 -0.51 9.67 -39.62 -0.38 -0.90 16 17 C -0.16 -2.11 9.99 -39.42 -0.39 -2.50 16 18 C 0.15 1.91 6.69 -39.22 -0.26 1.65 16 19 O -0.31 -3.71 10.14 -19.42 -0.20 -3.91 16 20 C 0.05 0.45 5.46 37.16 0.20 0.65 16 21 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 22 C -0.25 -3.32 9.02 -39.37 -0.35 -3.67 16 23 C 0.14 2.17 6.31 -39.44 -0.25 1.92 16 24 F -0.13 -2.08 13.27 2.25 0.03 -2.05 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 28 H 0.05 0.99 5.63 -51.93 -0.29 0.69 16 29 H 0.07 1.54 6.43 -51.93 -0.33 1.21 16 30 H 0.08 1.65 7.12 -51.93 -0.37 1.28 16 31 H 0.06 1.09 4.98 -51.93 -0.26 0.83 16 32 H 0.00 -0.04 5.88 -51.93 -0.31 -0.35 16 33 H 0.03 0.82 7.70 -51.93 -0.40 0.42 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.04 0.78 5.42 -51.93 -0.28 0.50 16 36 H 0.08 1.43 7.55 -51.93 -0.39 1.04 16 37 H 0.14 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.06 0.47 7.67 -51.93 -0.40 0.08 16 40 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.13 1.49 6.30 -52.49 -0.33 1.16 16 LS Contribution 350.47 15.07 5.28 5.28 Total: -1.00 -30.40 350.47 -8.74 -39.14 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.66 Total: -0.53 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -1.83 Total: -16.25 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: -0.35 Total: -38.48 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.20 Total: -3.91 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.03 Total: -2.05 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.40 -8.74 -39.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237635607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.349 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds