Wall clock time and date at job start Fri Apr 10 2020 20:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99873 * 2 1 4 4 C 1.53000 * 109.46927 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47083 * 179.97438 * 4 3 2 6 6 N 1.29949 * 126.28466 * 89.97458 * 5 4 3 7 7 O 1.21303 * 110.25285 * 180.02562 * 6 5 4 8 8 C 1.33645 * 109.80837 * 0.02562 * 7 6 5 9 9 C 1.50705 * 126.54981 * 179.97438 * 8 7 6 10 10 N 1.46899 * 109.46990 * 270.02621 * 9 8 7 11 11 C 1.46847 * 110.99862 * 170.00184 * 10 9 8 12 12 C 1.53044 * 109.51335 * 174.15436 * 11 10 9 13 13 C 1.53119 * 109.27589 * 59.18419 * 12 11 10 14 14 C 1.50703 * 109.51728 * 182.37636 * 13 12 11 15 15 H 1.08001 * 120.00215 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99699 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99840 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47033 * 60.00186 * 18 16 14 20 20 H 1.48497 * 109.46737 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46985 * 299.99870 * 18 16 14 22 22 C 1.53120 * 109.16202 * 302.34077 * 13 12 11 23 23 C 1.46847 * 110.99299 * 45.79343 * 10 9 8 24 24 N 1.31136 * 106.89947 * 0.22464 * 8 7 6 25 25 H 1.09001 * 109.47265 * 299.99744 * 1 2 3 26 26 H 1.08998 * 109.47638 * 59.99945 * 1 2 3 27 27 H 1.09006 * 109.47305 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47017 * 60.00275 * 3 2 1 29 29 H 1.08995 * 109.47141 * 300.00366 * 3 2 1 30 30 H 1.09003 * 109.46938 * 60.00360 * 4 3 2 31 31 H 1.08995 * 109.47618 * 300.00207 * 4 3 2 32 32 H 1.09002 * 109.46547 * 150.02610 * 9 8 7 33 33 H 1.08997 * 109.46818 * 30.02512 * 9 8 7 34 34 H 1.09002 * 109.46448 * 54.14158 * 11 10 9 35 35 H 1.08994 * 109.45958 * 294.16523 * 11 10 9 36 36 H 1.09000 * 109.49745 * 179.12223 * 12 11 10 37 37 H 1.08999 * 109.49729 * 299.20033 * 12 11 10 38 38 H 1.08993 * 109.52284 * 62.25342 * 13 12 11 39 39 H 0.97004 * 119.99580 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.50328 * 177.59853 * 22 13 12 41 41 H 1.09004 * 109.50202 * 297.68149 * 22 13 12 42 42 H 1.09005 * 109.46836 * 65.83946 * 23 10 9 43 43 H 1.08995 * 109.45748 * 305.85482 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1484 2.5613 0.0000 6 7 4.4604 3.2647 1.0472 7 8 4.9344 4.3297 0.7117 8 6 4.9703 4.4094 -0.6219 9 6 5.4851 5.5670 -1.4382 10 7 4.3868 6.5058 -1.7034 11 6 4.8918 7.7548 -2.2879 12 6 3.7131 8.6469 -2.6842 13 6 2.8670 8.9473 -1.4439 14 6 1.6725 9.7772 -1.8382 15 1 1.5298 10.0622 -2.8701 16 6 0.7613 10.1719 -0.8816 17 7 0.9349 9.8245 0.3748 18 14 -0.7190 11.2013 -1.3702 19 1 -1.5373 10.4537 -2.3584 20 1 -1.5387 11.4918 -0.1666 21 1 -0.2572 12.4770 -1.9738 22 6 2.3940 7.6283 -0.8266 23 6 3.6109 6.7657 -0.4841 24 7 4.4671 3.2903 -1.0844 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 3.8574 0.6436 -0.8892 31 1 3.8567 0.6439 0.8908 32 1 5.8828 5.1966 -2.3831 33 1 6.2745 6.0777 -0.8869 34 1 5.4883 7.5272 -3.1713 35 1 5.5103 8.2741 -1.5560 36 1 4.0883 9.5803 -3.1037 37 1 3.1021 8.1337 -3.4269 38 1 3.4673 9.4949 -0.7175 39 1 0.2940 10.1025 1.0478 40 1 1.8267 7.8341 0.0810 41 1 1.7612 7.0993 -1.5393 42 1 4.2355 7.2899 0.2392 43 1 3.2770 5.8198 -0.0577 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583772668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:18:43 Heat of formation + Delta-G solvation = 19.625608 kcal Electronic energy + Delta-G solvation = -24040.906626 eV Core-core repulsion = 20510.438395 eV Total energy + Delta-G solvation = -3530.468231 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.61065 -38.51217 -38.24921 -36.12143 -34.64852 -33.09386 -31.59477 -30.69473 -29.93539 -27.51280 -26.88466 -24.96379 -24.44309 -23.21400 -22.21600 -21.73060 -20.79253 -18.69514 -18.20234 -17.48086 -16.63048 -16.42396 -16.25210 -15.41890 -15.35442 -15.14811 -14.50048 -14.41089 -13.83359 -13.67638 -13.37382 -13.03740 -12.63565 -12.60001 -12.49701 -12.18709 -11.94014 -11.70406 -11.63700 -11.58376 -11.30596 -11.00860 -10.96082 -10.81267 -10.56012 -10.31209 -10.06325 -9.96967 -9.92408 -9.51548 -9.03878 -8.79377 -8.32887 -8.02196 -6.00046 -4.05616 1.10688 2.13091 2.77936 3.23065 3.31420 3.36262 3.38858 3.79278 4.07558 4.23967 4.43308 4.71048 4.78971 4.94701 5.11182 5.12767 5.17165 5.19635 5.30180 5.37498 5.43848 5.51996 5.52974 5.65254 5.71089 5.77918 5.92283 5.97835 6.04997 6.17256 6.45235 6.52282 6.76193 6.82890 6.96055 7.00109 7.27585 7.42997 7.47778 7.74775 7.98496 8.09209 8.14992 8.43993 8.97792 9.59148 11.06199 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.003848 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.939786 B = 7275.652286 C = 8675.710734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.067 3.933 4 C -0.023 4.023 5 C 0.166 3.834 6 N -0.380 5.380 7 O 0.078 5.922 8 C 0.201 3.799 9 C 0.142 3.858 10 N -0.527 5.527 11 C 0.061 3.939 12 C -0.106 4.106 13 C 0.048 3.952 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.102 4.102 23 C 0.053 3.947 24 N -0.467 5.467 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.023 0.977 39 H 0.260 0.740 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.033 0.967 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.814 -14.666 -1.097 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C -0.011 4.011 4 C -0.062 4.062 5 C -0.106 4.106 6 N -0.087 5.087 7 O 0.019 5.981 8 C -0.020 4.020 9 C 0.013 3.987 10 N -0.255 5.255 11 C -0.066 4.066 12 C -0.144 4.144 13 C 0.029 3.971 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.141 4.141 23 C -0.074 4.074 24 N -0.200 5.200 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.271 -15.601 -0.741 16.830 hybrid contribution -0.528 1.283 0.431 1.452 sum 5.743 -14.318 -0.310 15.430 Atomic orbital electron populations 1.22770 0.80340 1.02839 1.00490 1.87792 1.20260 1.27382 1.95577 1.22387 0.92141 0.85035 1.01524 1.19658 0.93437 0.87271 1.05799 1.25508 1.01436 0.99797 0.83906 1.74631 1.15624 0.94530 1.23938 1.85344 1.58368 1.29275 1.25119 1.28658 0.95142 0.96451 0.81754 1.20733 0.93631 0.87163 0.97210 1.62318 1.20346 1.13286 1.29512 1.22195 0.97953 0.88565 0.97853 1.21692 0.95392 0.96617 1.00730 1.18687 0.94194 0.92601 0.91574 1.21155 1.07685 1.32022 0.94171 0.92700 1.24968 0.97963 0.96057 0.94973 1.69858 1.36564 1.46011 1.00672 0.86689 0.82852 0.80825 0.77819 1.20308 1.21377 1.20311 1.21669 0.94115 0.95277 1.02999 1.22407 0.97125 0.98819 0.89031 1.71914 1.16022 1.03234 1.28880 0.93835 0.93685 0.89403 0.92725 0.92139 0.87745 0.88332 0.86491 0.91336 0.91616 0.94938 0.92649 0.92227 0.95927 0.92997 0.88781 0.93760 0.94920 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.47 10.70 -35.23 -0.38 -4.85 16 3 C 0.07 0.78 5.92 37.16 0.22 1.00 16 4 C -0.02 -0.26 6.21 -27.88 -0.17 -0.43 16 5 C 0.17 2.39 7.47 -156.37 -1.17 1.22 16 6 N -0.38 -5.92 12.16 30.90 0.38 -5.54 16 7 O 0.08 1.21 10.55 18.10 0.19 1.40 16 8 C 0.20 2.95 6.18 -13.05 -0.08 2.87 16 9 C 0.14 1.83 5.90 -4.97 -0.03 1.80 16 10 N -0.53 -8.71 4.80 -236.11 -1.13 -9.84 16 11 C 0.06 0.98 5.43 -3.83 -0.02 0.95 16 12 C -0.11 -2.09 5.32 -26.65 -0.14 -2.23 16 13 C 0.05 1.15 2.16 -91.65 -0.20 0.95 16 14 C -0.51 -13.76 8.57 -34.44 -0.29 -14.05 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 17 N -0.89 -25.12 11.37 55.43 0.63 -24.49 16 18 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.10 -2.38 5.12 -26.65 -0.14 -2.51 16 23 C 0.05 1.02 5.00 -3.83 -0.02 1.00 16 24 N -0.47 -7.14 11.55 -9.86 -0.11 -7.25 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 41 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.89 6.03 -51.93 -0.31 0.57 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -29.76 350.03 -8.13 -37.90 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.94 Total: -2.19 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.02 Total: -6.46 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.24 Total: -47.13 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: -0.19 Total: -3.45 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.76 -8.13 -37.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583772668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.523 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds