Wall clock time and date at job start Fri Apr 10 2020 20:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47031 * 2 1 4 4 C 1.53006 * 109.46915 * 185.44772 * 3 2 1 5 5 C 1.53002 * 109.46649 * 65.00180 * 4 3 2 6 6 C 1.52998 * 109.47296 * 65.45390 * 3 2 1 7 7 N 1.46501 * 109.47202 * 184.39393 * 6 3 2 8 8 C 1.46499 * 120.00143 * 83.86381 * 7 6 3 9 9 C 1.50703 * 109.46742 * 273.77208 * 8 7 6 10 10 H 1.07996 * 120.00376 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99499 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00599 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99930 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46773 * 90.00002 * 13 11 9 15 15 H 1.48493 * 109.47473 * 210.00209 * 13 11 9 16 16 H 1.48499 * 109.46967 * 330.00253 * 13 11 9 17 17 C 1.34776 * 119.99697 * 263.86139 * 7 6 3 18 18 O 1.21286 * 119.99916 * 4.00180 * 17 7 6 19 19 C 1.50693 * 120.00104 * 184.00017 * 17 7 6 20 20 H 1.08999 * 110.51125 * 38.08333 * 19 17 7 21 21 C 1.54981 * 110.57117 * 160.84310 * 19 17 7 22 22 C 1.55056 * 102.25839 * 155.53734 * 21 19 17 23 23 C 1.51840 * 104.52681 * 322.57016 * 22 21 19 24 24 O 1.20762 * 126.34121 * 203.71306 * 23 22 21 25 25 C 1.51442 * 107.32025 * 23.68646 * 23 22 21 26 26 H 1.09003 * 109.47344 * 293.90320 * 1 2 3 27 27 H 1.08997 * 109.47128 * 173.89933 * 1 2 3 28 28 H 1.09006 * 109.47016 * 53.90345 * 1 2 3 29 29 H 1.09001 * 109.46636 * 119.99791 * 2 1 3 30 30 H 1.08999 * 109.47531 * 239.99549 * 2 1 3 31 31 H 1.08998 * 109.47162 * 305.45190 * 3 2 1 32 32 H 1.08994 * 109.46647 * 184.99664 * 4 3 2 33 33 H 1.08996 * 109.47079 * 305.00117 * 4 3 2 34 34 H 1.08996 * 109.47432 * 60.00152 * 5 4 3 35 35 H 1.08998 * 109.46793 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.47476 * 299.99805 * 5 4 3 37 37 H 1.09009 * 109.47037 * 304.39247 * 6 3 2 38 38 H 1.08995 * 109.47275 * 64.38787 * 6 3 2 39 39 H 1.08994 * 109.47393 * 33.77240 * 8 7 6 40 40 H 1.08997 * 109.47073 * 153.77506 * 8 7 6 41 41 H 0.96992 * 120.00346 * 179.97438 * 12 11 9 42 42 H 1.09003 * 110.82999 * 273.85484 * 21 19 17 43 43 H 1.08996 * 110.83820 * 37.44137 * 21 19 17 44 44 H 1.08996 * 110.48478 * 203.75377 * 22 21 19 45 45 H 1.09005 * 110.41653 * 81.35007 * 22 21 19 46 46 H 1.09000 * 109.98716 * 240.29947 * 25 23 22 47 47 H 1.08994 * 110.01913 * 119.00586 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5639 1.4446 -0.1370 5 6 3.9539 0.8774 -1.5034 6 6 1.6450 2.1231 1.3121 7 7 2.0408 3.5330 1.2694 8 6 1.1671 4.5200 0.6300 9 6 1.4617 4.5694 -0.8471 10 1 2.2231 3.9293 -1.2677 11 6 0.7590 5.4318 -1.6616 12 7 -0.1679 6.2117 -1.1495 13 14 1.1245 5.4936 -3.4925 14 1 0.2617 4.5155 -4.2027 15 1 0.8506 6.8597 -4.0062 16 1 2.5515 5.1546 -3.7241 17 6 3.2086 3.9220 1.8183 18 8 3.9653 3.0958 2.2829 19 6 3.5743 5.3834 1.8546 20 1 2.6935 5.9926 2.0573 21 6 4.6725 5.6437 2.9168 22 6 5.3392 6.9407 2.3900 23 6 5.3419 6.7814 0.8800 24 8 6.0889 7.3275 0.1041 25 6 4.2347 5.8102 0.5272 26 1 -0.3634 0.4164 0.9395 27 1 -0.3633 -1.0218 -0.1092 28 1 -0.3633 0.6055 -0.8304 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.5991 1.9837 -0.8371 32 1 3.9352 2.4655 -0.0480 33 1 4.0003 0.8294 0.6498 34 1 3.5175 1.4927 -2.2902 35 1 5.0394 0.8794 -1.6012 36 1 3.5825 -0.1435 -1.5925 37 1 0.5657 2.0527 1.4474 38 1 2.1483 1.6294 2.1434 39 1 0.1258 4.2371 0.7836 40 1 1.3456 5.5016 1.0691 41 1 -0.6620 6.8187 -1.7224 42 1 4.2304 5.8041 3.9001 43 1 5.3897 4.8233 2.9421 44 1 6.3589 7.0252 2.7658 45 1 4.7542 7.8136 2.6797 46 1 4.6506 4.9390 0.0211 47 1 3.5007 6.2981 -0.1140 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584055152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:24 Heat of formation + Delta-G solvation = -119.359102 kcal Electronic energy + Delta-G solvation = -25933.308250 eV Core-core repulsion = 22500.353534 eV Total energy + Delta-G solvation = -3432.954717 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.46877 -40.23440 -38.25962 -36.63336 -36.15005 -34.34132 -32.59527 -30.66747 -29.54287 -28.78726 -27.82147 -25.30128 -24.82552 -23.46233 -22.56155 -20.67006 -20.47508 -19.65602 -18.51327 -18.19756 -17.31703 -16.95622 -16.53515 -16.06266 -16.03875 -15.62919 -15.42832 -15.03075 -14.93477 -14.43300 -14.32321 -14.27679 -14.18802 -13.64420 -13.51965 -13.24856 -13.03355 -12.82624 -12.72388 -12.69177 -12.55423 -12.41694 -12.36411 -12.17242 -12.13277 -11.97364 -11.77575 -11.58121 -11.22885 -11.19096 -11.15365 -10.77908 -10.51524 -10.33059 -9.31928 -8.15554 -6.24029 0.89027 1.36786 1.42491 1.48146 1.79617 2.35165 2.48075 3.14422 3.20626 3.50062 3.78970 3.84390 3.95675 4.04272 4.12998 4.28286 4.33809 4.37522 4.41789 4.50864 4.51563 4.60632 4.64324 4.78655 4.83110 4.86540 4.90424 4.94773 4.99170 5.02252 5.04568 5.13508 5.18141 5.19793 5.28129 5.30024 5.32898 5.38762 5.49277 5.53842 5.69099 5.77247 5.95063 6.14341 6.44354 6.67862 6.91527 7.38621 7.50428 8.89805 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.010340 B = 0.007435 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.175452 B = 3765.092317 C = 5140.836105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.100 4.100 4 C -0.100 4.100 5 C -0.147 4.147 6 C 0.124 3.876 7 N -0.594 5.594 8 C 0.250 3.750 9 C -0.517 4.517 10 H 0.056 0.944 11 C 0.030 3.970 12 N -0.917 5.917 13 Si 0.930 3.070 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.520 3.480 18 O -0.582 6.582 19 C -0.103 4.103 20 H 0.110 0.890 21 C -0.094 4.094 22 C -0.166 4.166 23 C 0.374 3.626 24 O -0.490 6.490 25 C -0.161 4.161 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.016 0.984 40 H 0.038 0.962 41 H 0.264 0.736 42 H 0.103 0.897 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.130 0.870 46 H 0.078 0.922 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -5.638 6.798 9.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.119 4.119 4 C -0.138 4.138 5 C -0.204 4.204 6 C 0.001 3.999 7 N -0.323 5.323 8 C 0.129 3.871 9 C -0.556 4.556 10 H 0.074 0.926 11 C -0.170 4.170 12 N -0.557 5.557 13 Si 0.757 3.243 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 C 0.309 3.691 18 O -0.464 6.464 19 C -0.124 4.124 20 H 0.128 0.872 21 C -0.131 4.131 22 C -0.203 4.203 23 C 0.253 3.747 24 O -0.366 6.366 25 C -0.199 4.199 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.035 0.965 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.122 0.878 43 H 0.095 0.905 44 H 0.131 0.869 45 H 0.148 0.852 46 H 0.097 0.903 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.481 -5.649 6.579 9.761 hybrid contribution -0.355 0.288 -1.540 1.606 sum 4.126 -5.362 5.039 8.436 Atomic orbital electron populations 1.21790 0.95562 1.01809 1.01562 1.21521 0.96068 0.94824 1.02398 1.21577 0.95511 0.96648 0.98162 1.21336 0.95590 0.99742 0.97138 1.21790 1.00715 1.01290 0.96593 1.21494 0.99644 0.80946 0.97782 1.48185 1.20294 1.09128 1.54683 1.19142 0.88848 0.87344 0.91716 1.21582 1.19603 1.21024 0.93387 0.92622 1.25376 0.95072 0.95473 1.01124 1.69970 1.24244 1.24863 1.36638 0.85977 0.78458 0.77237 0.82600 1.20309 1.21216 1.20051 1.20525 0.80658 0.91085 0.76824 1.90579 1.50519 1.55011 1.50274 1.21995 1.00789 0.93307 0.96353 0.87221 1.22404 0.96235 0.96464 0.98029 1.22920 1.04882 1.00768 0.91716 1.25368 0.79808 0.76546 0.92977 1.90374 1.40787 1.45419 1.60026 1.22415 0.98702 1.00193 0.98556 0.92735 0.91378 0.93948 0.91403 0.91188 0.91813 0.94815 0.92654 0.94280 0.92924 0.91027 0.90778 0.90993 0.96545 0.94384 0.92689 0.87844 0.90502 0.86950 0.85189 0.90324 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.53 71.98 0.69 -3.00 16 2 C -0.11 -2.86 5.27 30.59 0.16 -2.70 16 3 C -0.10 -3.28 1.78 -10.79 -0.02 -3.30 16 4 C -0.10 -3.40 4.52 30.60 0.14 -3.26 16 5 C -0.15 -4.35 9.67 71.98 0.70 -3.65 16 6 C 0.12 4.25 4.86 86.38 0.42 4.67 16 7 N -0.59 -22.65 2.25 -826.16 -1.86 -24.51 16 8 C 0.25 10.88 5.06 85.63 0.43 11.31 16 9 C -0.52 -24.72 7.51 25.60 0.19 -24.53 16 10 H 0.06 2.75 6.92 -2.91 -0.02 2.73 16 11 C 0.03 1.49 5.46 84.65 0.46 1.95 16 12 N -0.92 -48.31 13.29 21.45 0.28 -48.02 16 13 Si 0.93 41.48 29.54 68.60 2.03 43.51 16 14 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 15 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 17 C 0.52 19.16 5.46 87.66 0.48 19.64 16 18 O -0.58 -22.99 13.99 -3.05 -0.04 -23.03 16 19 C -0.10 -3.25 2.39 -10.43 -0.02 -3.28 16 20 H 0.11 3.38 6.39 -2.39 -0.02 3.36 16 21 C -0.09 -2.27 6.20 31.98 0.20 -2.07 16 22 C -0.17 -3.61 6.72 30.92 0.21 -3.40 16 23 C 0.37 11.78 7.88 29.70 0.23 12.01 16 24 O -0.49 -18.60 17.99 -1.46 -0.03 -18.63 16 25 C -0.16 -5.57 5.88 30.52 0.18 -5.39 16 26 H 0.05 1.32 6.79 -2.39 -0.02 1.31 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.69 6.33 -2.39 -0.02 1.68 16 31 H 0.06 2.49 6.38 -2.39 -0.02 2.47 16 32 H 0.03 1.33 6.06 -2.39 -0.01 1.32 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 1.80 6.45 -2.39 -0.02 1.78 16 37 H 0.07 2.43 6.39 -2.38 -0.02 2.41 16 38 H 0.07 2.44 7.30 -2.39 -0.02 2.42 16 39 H 0.02 0.77 8.00 -2.39 -0.02 0.75 16 40 H 0.04 1.68 5.77 -2.39 -0.01 1.67 16 41 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 42 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.08 2.08 7.24 -2.39 -0.02 2.06 16 44 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.13 2.26 8.14 -2.38 -0.02 2.24 16 46 H 0.08 3.00 7.82 -2.39 -0.02 2.98 16 47 H 0.10 3.91 7.61 -2.39 -0.02 3.89 16 Total: -1.00 -58.25 363.60 5.77 -52.48 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.94 Total: 23.18 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 4.44 Total: -4.98 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -1.57 Total: -72.53 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.07 Total: -41.66 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -58.25 5.77 -52.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584055152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.875 kcal (2) G-P(sol) polarization free energy of solvation -58.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds