Wall clock time and date at job start Fri Apr 10 2020 20:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47430 * 2 1 4 4 C 1.50707 * 109.46988 * 120.00128 * 2 1 3 5 5 O 1.21280 * 119.99358 * 338.08226 * 4 2 1 6 6 N 1.34774 * 120.00132 * 158.08780 * 4 2 1 7 7 C 1.47075 * 120.87992 * 354.91808 * 6 4 2 8 8 C 1.53243 * 108.52210 * 231.20922 * 7 6 4 9 9 N 1.46899 * 109.34119 * 306.17347 * 8 7 6 10 10 C 1.46897 * 111.00445 * 187.25334 * 9 8 7 11 11 H 1.09004 * 110.91102 * 51.09471 * 10 9 8 12 12 C 1.55154 * 111.00803 * 174.99987 * 10 9 8 13 13 C 1.54320 * 102.94196 * 153.57831 * 12 10 9 14 14 N 1.47023 * 107.26968 * 337.80539 * 13 12 10 15 15 C 1.36939 * 125.64546 * 178.98225 * 14 13 12 16 16 H 1.07999 * 119.99764 * 179.97438 * 15 14 13 17 17 C 1.38819 * 120.00178 * 359.97144 * 15 14 13 18 18 N 1.31614 * 119.99968 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 119.99942 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47338 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47290 * 120.00243 * 19 17 15 22 22 H 1.48497 * 109.47411 * 239.99969 * 19 17 15 23 23 C 1.47420 * 108.70738 * 358.94132 * 14 13 12 24 24 C 1.46901 * 111.26696 * 63.10130 * 9 8 7 25 25 C 1.47080 * 120.88007 * 174.94747 * 6 4 2 26 26 H 1.08995 * 109.47161 * 300.00506 * 1 2 3 27 27 H 1.09005 * 109.46672 * 60.00363 * 1 2 3 28 28 H 1.09000 * 109.47635 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47161 * 239.99494 * 2 1 3 30 30 H 1.09002 * 109.46671 * 297.91879 * 3 2 1 31 31 H 1.09002 * 109.46836 * 57.91885 * 3 2 1 32 32 H 1.08999 * 109.46632 * 177.91581 * 3 2 1 33 33 H 1.09002 * 109.62706 * 111.50013 * 7 6 4 34 34 H 1.09002 * 109.63411 * 350.92008 * 7 6 4 35 35 H 1.08994 * 109.49273 * 186.21446 * 8 7 6 36 36 H 1.08994 * 109.49484 * 66.13113 * 8 7 6 37 37 H 1.08999 * 110.71846 * 35.20852 * 12 10 9 38 38 H 1.08998 * 110.72132 * 271.93828 * 12 10 9 39 39 H 1.09001 * 109.88688 * 97.22476 * 13 12 10 40 40 H 1.09007 * 109.88144 * 218.39239 * 13 12 10 41 41 H 0.96994 * 120.00685 * 180.02562 * 18 17 15 42 42 H 1.08996 * 110.36944 * 142.96321 * 23 14 13 43 43 H 1.09000 * 110.36723 * 265.18489 * 23 14 13 44 44 H 1.08995 * 109.49174 * 56.85946 * 24 9 8 45 45 H 1.09007 * 109.48967 * 176.94050 * 24 9 8 46 46 H 1.09003 * 109.62346 * 248.50054 * 25 6 4 47 47 H 1.09001 * 109.63114 * 9.07892 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 1.3156 -0.8191 2.2029 6 7 3.2778 -1.2249 1.2504 7 6 4.1231 -1.2025 0.0470 8 6 4.6584 -2.6173 -0.1983 9 7 5.3225 -3.1039 1.0182 10 6 5.9983 -4.3849 0.7727 11 1 6.6406 -4.3238 -0.1059 12 6 6.8032 -4.8371 2.0196 13 6 6.8406 -6.3725 1.8687 14 7 5.7159 -6.7533 1.0018 15 6 5.4099 -8.0279 0.6054 16 1 4.5583 -8.2044 -0.0350 17 6 6.1942 -9.0930 1.0266 18 7 7.2316 -8.8779 1.8075 19 14 5.7771 -10.8314 0.4853 20 1 4.5731 -10.8039 -0.3835 21 1 6.9203 -11.4018 -0.2718 22 1 5.5068 -11.6706 1.6802 23 6 4.9715 -5.5361 0.6309 24 6 4.3744 -3.2144 2.1349 25 6 3.8276 -1.8242 2.4759 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.7075 1.9454 -0.9081 31 1 1.6466 1.9670 0.8708 32 1 3.1294 1.4426 0.0374 33 1 4.9567 -0.5166 0.1978 34 1 3.5314 -0.8811 -0.8102 35 1 5.3739 -2.5980 -1.0203 36 1 3.8312 -3.2804 -0.4511 37 1 6.2867 -4.5521 2.9362 38 1 7.8112 -4.4230 1.9990 39 1 7.7815 -6.6772 1.4105 40 1 6.7319 -6.8438 2.8456 41 1 7.7799 -9.6220 2.1015 42 1 4.6193 -5.6057 -0.3982 43 1 4.1319 -5.3835 1.3090 44 1 3.5511 -3.8692 1.8496 45 1 4.8841 -3.6282 3.0051 46 1 4.6328 -1.1980 2.8602 47 1 3.0405 -1.9138 3.2246 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046002145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:21:26 Heat of formation + Delta-G solvation = 4.264689 kcal Electronic energy + Delta-G solvation = -25065.142272 eV Core-core repulsion = 21669.841036 eV Total energy + Delta-G solvation = -3395.301236 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51946 -38.85863 -36.60039 -34.80768 -34.08922 -31.93294 -31.19361 -29.31213 -27.99806 -27.41330 -25.95431 -24.43189 -24.18642 -22.93051 -21.33519 -20.07243 -19.45013 -18.48921 -17.53090 -16.91386 -16.03673 -15.90772 -15.42307 -14.91225 -14.57485 -14.43918 -14.34054 -14.11802 -13.99339 -13.27564 -13.06099 -12.74406 -12.67614 -12.48761 -12.40646 -12.18691 -12.01050 -11.79133 -11.67000 -11.46382 -11.15540 -11.10719 -11.05271 -10.85900 -10.81858 -10.60083 -10.08587 -10.04379 -9.83065 -9.71848 -9.64142 -8.81420 -8.61700 -8.05730 -6.82376 -5.72698 -3.06422 2.52527 2.84849 3.38405 3.43935 3.46391 3.96113 4.25250 4.49174 4.55823 4.72160 4.73713 4.90602 5.05703 5.08221 5.18255 5.30957 5.31943 5.38440 5.42909 5.45409 5.52703 5.55914 5.61713 5.63302 5.68272 5.72509 5.79798 5.81228 5.86798 5.92968 6.00148 6.09791 6.28016 6.36977 6.42152 6.49546 6.62716 6.71621 7.21190 7.26910 7.36940 7.54954 7.62166 7.81700 8.07456 8.24446 9.20620 9.80690 10.46446 11.38810 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.027479 B = 0.003287 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.715448 B = 8517.062601 C = 8896.063827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C -0.140 4.140 4 C 0.518 3.482 5 O -0.544 6.544 6 N -0.612 5.612 7 C 0.111 3.889 8 C 0.038 3.962 9 N -0.525 5.525 10 C 0.070 3.930 11 H 0.089 0.911 12 C -0.136 4.136 13 C 0.177 3.823 14 N -0.603 5.603 15 C -0.229 4.229 16 H 0.076 0.924 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 0.912 3.088 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.107 3.893 24 C 0.034 3.966 25 C 0.117 3.883 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.042 0.958 41 H 0.252 0.748 42 H 0.032 0.968 43 H 0.021 0.979 44 H 0.047 0.953 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.378 20.329 -4.593 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 C -0.198 4.198 4 C 0.306 3.694 5 O -0.421 6.421 6 N -0.345 5.345 7 C -0.012 4.012 8 C -0.091 4.091 9 N -0.249 5.249 10 C -0.039 4.039 11 H 0.107 0.893 12 C -0.174 4.174 13 C 0.052 3.948 14 N -0.329 5.329 15 C -0.357 4.357 16 H 0.094 0.906 17 C -0.204 4.204 18 N -0.568 5.568 19 Si 0.742 3.258 20 H -0.206 1.206 21 H -0.217 1.217 22 H -0.217 1.217 23 C -0.021 4.021 24 C -0.095 4.095 25 C -0.006 4.006 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.038 0.962 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.091 0.909 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.320 20.402 -3.906 21.713 hybrid contribution -0.626 -1.720 -0.575 1.919 sum -6.947 18.682 -4.481 20.430 Atomic orbital electron populations 1.21642 0.92547 1.02666 1.02341 1.21340 0.98265 0.97481 0.96723 1.21731 1.01369 0.93799 1.02883 1.20695 0.80748 0.78301 0.89628 1.90676 1.55472 1.58921 1.37066 1.48216 1.14452 1.59177 1.12677 1.21946 0.94436 0.97676 0.87134 1.22452 0.98144 0.94909 0.93606 1.62160 1.29114 1.28620 1.04971 1.22976 0.95799 0.85839 0.99300 0.89326 1.22987 0.99013 0.99103 0.96302 1.21180 0.91537 0.86944 0.95144 1.44390 1.30138 1.01315 1.57101 1.19094 1.09785 0.81791 1.25074 0.90583 1.24801 0.97690 0.97997 0.99918 1.69969 1.18559 1.29751 1.38550 0.86048 0.77449 0.84532 0.77754 1.20555 1.21711 1.21714 1.22169 0.94354 0.88184 0.97377 1.22593 0.95240 0.95758 0.95887 1.21759 0.98427 0.93638 0.86754 0.91545 0.92003 0.92327 0.88892 0.91363 0.91969 0.92063 0.90486 0.89468 0.89489 0.94139 0.92072 0.91809 0.93500 0.93949 0.93781 0.94965 0.96162 0.93500 0.88824 0.90909 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.69 37.16 0.32 -0.86 16 2 C -0.12 -1.02 2.47 -91.77 -0.23 -1.25 16 3 C -0.14 -0.97 9.16 37.16 0.34 -0.63 16 4 C 0.52 6.45 6.84 -10.98 -0.08 6.38 16 5 O -0.54 -8.82 15.51 5.56 0.09 -8.73 16 6 N -0.61 -7.11 3.01 -172.46 -0.52 -7.63 16 7 C 0.11 1.03 6.14 -3.60 -0.02 1.00 16 8 C 0.04 0.44 5.39 -3.70 -0.02 0.42 16 9 N -0.52 -7.30 4.66 -223.78 -1.04 -8.35 16 10 C 0.07 1.19 3.11 -65.56 -0.20 0.99 16 11 H 0.09 1.52 8.05 -51.93 -0.42 1.10 16 12 C -0.14 -2.50 6.46 -24.90 -0.16 -2.66 16 13 C 0.18 4.28 5.37 -3.07 -0.02 4.26 16 14 N -0.60 -15.48 3.39 -170.07 -0.58 -16.06 16 15 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 18 N -0.92 -27.14 10.31 55.49 0.57 -26.57 16 19 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.11 2.22 6.03 -2.53 -0.02 2.20 16 24 C 0.03 0.47 4.74 -3.70 -0.02 0.46 16 25 C 0.12 1.46 6.61 -3.60 -0.02 1.44 16 26 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.67 6.19 -51.93 -0.32 0.34 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.40 7.81 -51.93 -0.41 -0.01 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.60 5.50 -51.93 -0.29 0.32 16 35 H 0.09 0.90 8.04 -51.93 -0.42 0.48 16 36 H 0.04 0.52 7.82 -51.93 -0.41 0.12 16 37 H 0.06 1.07 5.80 -51.93 -0.30 0.77 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 40 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.02 0.44 5.63 -51.93 -0.29 0.15 16 44 H 0.05 0.76 6.30 -51.93 -0.33 0.43 16 45 H 0.09 1.37 5.82 -51.93 -0.30 1.07 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.09 1.25 7.04 -51.93 -0.37 0.89 16 LS Contribution 352.59 15.07 5.31 5.31 Total: -1.00 -32.40 352.59 -9.51 -41.92 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.95 Total: -1.95 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.37 Total: 4.82 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -1.57 Total: -58.60 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.40 -9.51 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046002145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.182 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds