Wall clock time and date at job start Fri Apr 10 2020 20:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.46951 * 2 1 4 4 H 1.09002 * 109.51023 * 57.37496 * 3 2 1 5 5 C 1.53101 * 109.50652 * 297.28478 * 3 2 1 6 6 O 1.43005 * 109.26087 * 183.21480 * 5 3 2 7 7 C 1.43021 * 113.73898 * 58.67519 * 6 5 3 8 8 C 1.53100 * 109.25576 * 301.33017 * 7 6 5 9 9 N 1.47013 * 109.25994 * 56.84491 * 8 7 6 10 10 C 1.46903 * 111.00208 * 177.60439 * 9 8 7 11 11 C 1.52999 * 109.47324 * 290.38426 * 10 9 8 12 12 N 1.46898 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.46896 * 110.99832 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47175 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.47219 * 54.99848 * 14 13 12 16 16 C 1.47205 * 109.47299 * 295.00320 * 14 13 12 17 17 N 8.22298 * 137.51818 * 87.15282 * 2 1 3 18 18 C 1.53003 * 109.47278 * 174.99977 * 14 13 12 19 19 C 1.50701 * 109.47145 * 185.00326 * 18 14 13 20 20 H 1.08001 * 120.00263 * 359.97438 * 19 18 14 21 21 C 1.37871 * 120.00180 * 180.02562 * 19 18 14 22 22 N 1.31518 * 120.00040 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00363 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46565 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47194 * 119.99560 * 23 21 19 26 26 H 1.48500 * 109.46773 * 239.99723 * 23 21 19 27 27 H 1.09003 * 109.47359 * 302.05977 * 1 2 3 28 28 H 1.09004 * 109.46952 * 182.06366 * 1 2 3 29 29 H 1.08997 * 109.47346 * 62.06130 * 1 2 3 30 30 H 1.08999 * 109.47254 * 119.99799 * 2 1 3 31 31 H 1.08994 * 109.47706 * 240.00078 * 2 1 3 32 32 H 1.08999 * 109.50925 * 303.15627 * 5 3 2 33 33 H 1.09002 * 109.49949 * 63.28169 * 5 3 2 34 34 H 1.08999 * 109.50718 * 61.25885 * 7 6 5 35 35 H 1.08997 * 109.50750 * 181.35081 * 7 6 5 36 36 H 1.08996 * 109.50350 * 176.78308 * 8 7 6 37 37 H 1.09004 * 109.50556 * 296.86556 * 8 7 6 38 38 H 1.09007 * 109.46411 * 50.37955 * 10 9 8 39 39 H 1.09000 * 109.46995 * 170.37735 * 10 9 8 40 40 H 1.09001 * 109.46528 * 299.99682 * 11 10 9 41 41 H 1.08996 * 109.47177 * 59.99583 * 11 10 9 42 42 H 1.00898 * 111.00362 * 56.03860 * 12 11 10 43 43 H 1.08997 * 109.47262 * 299.99965 * 13 12 11 44 44 H 1.09003 * 109.47051 * 59.99953 * 13 12 11 45 45 H 1.08998 * 109.47236 * 305.00154 * 18 14 13 46 46 H 1.09003 * 109.46876 * 65.00144 * 18 14 13 47 47 H 0.97001 * 120.00213 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6390 1.9704 0.8653 5 6 1.5866 2.1450 -1.2826 6 8 2.1283 3.4682 -1.3125 7 6 3.5569 3.5068 -1.2559 8 6 4.0302 2.8181 0.0269 9 7 3.5088 1.4440 0.0603 10 6 3.9876 0.7280 1.2503 11 6 5.4882 0.4615 1.1159 12 7 5.9667 -0.2550 2.3056 13 6 7.4068 -0.5291 2.2112 14 6 7.8675 -1.2741 3.4657 15 1 7.2622 -2.1707 3.5987 16 6 7.7136 -0.3997 4.6399 17 7 7.5943 0.2759 5.5466 18 6 9.3377 -1.6692 3.3132 19 6 9.7574 -2.5082 4.4927 20 1 9.0467 -2.7363 5.2732 21 6 11.0488 -2.9836 4.5759 22 7 11.9145 -2.7053 3.6256 23 14 11.5689 -4.0241 6.0375 24 1 10.4174 -4.1921 6.9601 25 1 12.0205 -5.3561 5.5613 26 1 12.6821 -3.3507 6.7534 27 1 -0.3634 0.5455 0.8709 28 1 -0.3633 -1.0270 0.0370 29 1 -0.3634 0.4815 -0.9078 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.9419 1.5866 -2.1486 33 1 0.4980 2.1969 -1.3037 34 1 3.9695 2.9879 -2.1211 35 1 3.8933 4.5435 -1.2587 36 1 5.1198 2.7946 0.0465 37 1 3.6624 3.3688 0.8926 38 1 3.8043 1.3344 2.1374 39 1 3.4570 -0.2198 1.3421 40 1 5.6714 -0.1448 0.2288 41 1 6.0187 1.4092 1.0241 42 1 5.4454 -1.1069 2.4488 43 1 7.6031 -1.1421 1.3316 44 1 7.9510 0.4116 2.1273 45 1 9.4665 -2.2427 2.3953 46 1 9.9528 -0.7704 3.2694 47 1 12.8230 -3.0401 3.6840 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335897708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:25:33 Heat of formation + Delta-G solvation = -28.949878 kcal Electronic energy + Delta-G solvation = -23543.569384 eV Core-core repulsion = 20146.827857 eV Total energy + Delta-G solvation = -3396.741527 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.21070 -37.56957 -36.55168 -35.24877 -34.24831 -33.43934 -31.72411 -30.08674 -29.14583 -26.84841 -25.43159 -25.02594 -22.65970 -22.16710 -21.90448 -21.44889 -20.25706 -17.15613 -16.95106 -16.69997 -16.38880 -15.83824 -15.46086 -15.08656 -14.88258 -14.80267 -14.46391 -14.12951 -14.05763 -13.60489 -13.34014 -13.22606 -12.73695 -12.63847 -12.38106 -12.09043 -12.06216 -11.93918 -11.79635 -11.59831 -11.52506 -11.19164 -11.14099 -11.06781 -10.76783 -10.70575 -10.65602 -10.51692 -10.25308 -9.88185 -9.55737 -9.22684 -8.67876 -8.47890 -8.33682 -6.11134 -4.14288 3.27403 3.30739 3.35770 3.40449 3.54157 3.72947 3.81940 4.28608 4.38187 4.42773 4.55394 4.59738 4.76558 4.84414 4.86284 4.90389 4.99517 5.05866 5.10982 5.16511 5.25737 5.27119 5.37519 5.40341 5.43915 5.50755 5.56104 5.60694 5.67084 5.69501 5.77452 5.84532 5.88472 5.92983 6.01717 6.35774 6.47395 6.65730 6.68786 6.83017 7.06972 7.40451 7.45306 7.51729 7.84352 8.21570 8.57512 8.90801 9.51390 10.99818 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.027455 B = 0.002397 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.620212 B =11680.461844 C =11996.415306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.049 3.951 4 H 0.049 0.951 5 C 0.069 3.931 6 O -0.387 6.387 7 C 0.063 3.937 8 C 0.015 3.985 9 N -0.532 5.532 10 C 0.051 3.949 11 C 0.065 3.935 12 N -0.695 5.695 13 C 0.069 3.931 14 C 0.010 3.990 15 H 0.099 0.901 16 C 0.255 3.745 17 N -0.480 5.480 18 C 0.031 3.969 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.283 1.283 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.039 0.961 41 H 0.069 0.931 42 H 0.340 0.660 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.026 0.974 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.939 6.967 -13.541 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.059 4.059 4 H 0.067 0.933 5 C -0.008 4.008 6 O -0.306 6.306 7 C -0.014 4.014 8 C -0.113 4.113 9 N -0.258 5.258 10 C -0.077 4.077 11 C -0.065 4.065 12 N -0.326 5.326 13 C -0.061 4.061 14 C -0.012 4.012 15 H 0.117 0.883 16 C -0.062 4.062 17 N -0.157 5.157 18 C -0.008 4.008 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.210 1.210 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.158 0.842 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.056 0.944 46 H 0.044 0.956 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.790 8.465 -12.283 25.588 hybrid contribution 0.474 -1.400 0.616 1.601 sum -20.316 7.066 -11.667 24.471 Atomic orbital electron populations 1.21815 0.95315 1.02121 1.01924 1.21621 0.95750 0.95094 1.03309 1.22330 0.87910 0.97163 0.98528 0.93257 1.22764 0.98680 0.83195 0.96202 1.87983 1.20605 1.27277 1.94712 1.22689 0.80957 1.01074 0.96667 1.22848 1.01406 0.88792 0.98223 1.62149 1.08059 1.14945 1.40639 1.22176 0.95866 0.99098 0.90561 1.21831 0.93997 0.99131 0.91500 1.60448 1.04694 1.28347 1.39151 1.22048 0.87151 1.00369 0.96547 1.19221 1.02945 0.93762 0.85317 0.88303 1.28909 0.90761 0.92736 0.93762 1.81023 1.11312 1.11491 1.11854 1.19175 0.85731 0.97390 0.98454 1.21182 0.96475 1.32241 1.06477 0.92440 1.24960 0.96601 0.96263 0.96202 1.69949 1.04729 1.45448 1.32920 0.86533 0.78741 0.80052 0.82751 1.19674 1.20843 1.20957 0.92637 0.92214 0.92479 0.91046 0.90837 0.92252 0.88465 0.92184 0.88441 0.89116 0.93835 0.93760 0.90078 0.94229 0.91220 0.84191 0.93138 0.90564 0.94417 0.95554 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.57 37.15 0.36 -0.53 16 2 C -0.12 -0.84 5.25 -26.73 -0.14 -0.98 16 3 C 0.05 0.41 2.08 -67.60 -0.14 0.27 16 4 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 5 C 0.07 0.55 5.91 37.21 0.22 0.77 16 6 O -0.39 -3.88 10.83 -35.23 -0.38 -4.26 16 7 C 0.06 0.53 7.01 37.21 0.26 0.79 16 8 C 0.02 0.14 5.46 -3.71 -0.02 0.12 16 9 N -0.53 -4.95 4.51 -226.33 -1.02 -5.97 16 10 C 0.05 0.50 5.05 -3.82 -0.02 0.48 16 11 C 0.07 0.70 5.69 -3.83 -0.02 0.68 16 12 N -0.69 -8.75 6.20 -113.79 -0.71 -9.46 16 13 C 0.07 0.99 5.05 -3.83 -0.02 0.98 16 14 C 0.01 0.17 2.35 -93.40 -0.22 -0.05 16 15 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 16 C 0.26 5.32 13.67 -20.73 -0.28 5.04 16 17 N -0.48 -10.95 18.54 42.19 0.78 -10.17 16 18 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 19 C -0.53 -13.94 8.60 -34.44 -0.30 -14.24 16 20 H 0.06 1.52 7.59 -52.49 -0.40 1.13 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -25.48 13.29 55.43 0.74 -24.75 16 23 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.29 6.68 -51.93 -0.35 -0.06 16 30 H 0.07 0.53 5.97 -51.93 -0.31 0.22 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.64 6.72 -51.93 -0.35 0.29 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.79 6.52 -51.93 -0.34 0.45 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 39 H 0.08 0.73 5.58 -51.93 -0.29 0.44 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.79 6.63 -51.93 -0.34 0.45 16 42 H 0.34 3.81 8.73 -39.29 -0.34 3.47 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 374.59 15.07 5.65 5.65 Total: -1.00 -30.71 374.59 -8.70 -39.41 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -8.19 Total: -2.22 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -0.55 Total: -4.47 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.21 Total: -50.35 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.38 Total: -4.26 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.71 -8.70 -39.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335897708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.461 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds