Wall clock time and date at job start Fri Apr 10 2020 20:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.46951 * 2 1 4 4 H 1.09002 * 109.51023 * 57.37496 * 3 2 1 5 5 C 1.53101 * 109.50652 * 297.28478 * 3 2 1 6 6 O 1.43005 * 109.26087 * 183.21480 * 5 3 2 7 7 C 1.43021 * 113.73898 * 58.67519 * 6 5 3 8 8 C 1.53100 * 109.25576 * 301.33017 * 7 6 5 9 9 N 1.47013 * 109.25994 * 56.84491 * 8 7 6 10 10 C 1.46903 * 111.00208 * 177.60439 * 9 8 7 11 11 C 1.52999 * 109.47324 * 290.38426 * 10 9 8 12 12 N 1.46898 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.46896 * 110.99832 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47175 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.47219 * 54.99848 * 14 13 12 16 16 C 1.47205 * 109.47299 * 295.00320 * 14 13 12 17 17 N 8.22298 * 137.51818 * 87.15282 * 2 1 3 18 18 C 1.53003 * 109.47278 * 174.99977 * 14 13 12 19 19 C 1.50701 * 109.47145 * 185.00326 * 18 14 13 20 20 H 1.08001 * 120.00263 * 359.97438 * 19 18 14 21 21 C 1.37871 * 120.00180 * 180.02562 * 19 18 14 22 22 N 1.31518 * 120.00040 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00363 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46565 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47194 * 119.99560 * 23 21 19 26 26 H 1.48500 * 109.46773 * 239.99723 * 23 21 19 27 27 H 1.09003 * 109.47359 * 302.05977 * 1 2 3 28 28 H 1.09004 * 109.46952 * 182.06366 * 1 2 3 29 29 H 1.08997 * 109.47346 * 62.06130 * 1 2 3 30 30 H 1.08999 * 109.47254 * 119.99799 * 2 1 3 31 31 H 1.08994 * 109.47706 * 240.00078 * 2 1 3 32 32 H 1.08999 * 109.50925 * 303.15627 * 5 3 2 33 33 H 1.09002 * 109.49949 * 63.28169 * 5 3 2 34 34 H 1.08999 * 109.50718 * 61.25885 * 7 6 5 35 35 H 1.08997 * 109.50750 * 181.35081 * 7 6 5 36 36 H 1.08996 * 109.50350 * 176.78308 * 8 7 6 37 37 H 1.09004 * 109.50556 * 296.86556 * 8 7 6 38 38 H 1.09007 * 109.46411 * 50.37955 * 10 9 8 39 39 H 1.09000 * 109.46995 * 170.37735 * 10 9 8 40 40 H 1.09001 * 109.46528 * 299.99682 * 11 10 9 41 41 H 1.08996 * 109.47177 * 59.99583 * 11 10 9 42 42 H 1.00898 * 111.00362 * 56.03860 * 12 11 10 43 43 H 1.08997 * 109.47262 * 299.99965 * 13 12 11 44 44 H 1.09003 * 109.47051 * 59.99953 * 13 12 11 45 45 H 1.08998 * 109.47236 * 305.00154 * 18 14 13 46 46 H 1.09003 * 109.46876 * 65.00144 * 18 14 13 47 47 H 0.97001 * 120.00213 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6390 1.9704 0.8653 5 6 1.5866 2.1450 -1.2826 6 8 2.1283 3.4682 -1.3125 7 6 3.5569 3.5068 -1.2559 8 6 4.0302 2.8181 0.0269 9 7 3.5088 1.4440 0.0603 10 6 3.9876 0.7280 1.2503 11 6 5.4882 0.4615 1.1159 12 7 5.9667 -0.2550 2.3056 13 6 7.4068 -0.5291 2.2112 14 6 7.8675 -1.2741 3.4657 15 1 7.2622 -2.1707 3.5987 16 6 7.7136 -0.3997 4.6399 17 7 7.5943 0.2759 5.5466 18 6 9.3377 -1.6692 3.3132 19 6 9.7574 -2.5082 4.4927 20 1 9.0467 -2.7363 5.2732 21 6 11.0488 -2.9836 4.5759 22 7 11.9145 -2.7053 3.6256 23 14 11.5689 -4.0241 6.0375 24 1 10.4174 -4.1921 6.9601 25 1 12.0205 -5.3561 5.5613 26 1 12.6821 -3.3507 6.7534 27 1 -0.3634 0.5455 0.8709 28 1 -0.3633 -1.0270 0.0370 29 1 -0.3634 0.4815 -0.9078 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.9419 1.5866 -2.1486 33 1 0.4980 2.1969 -1.3037 34 1 3.9695 2.9879 -2.1211 35 1 3.8933 4.5435 -1.2587 36 1 5.1198 2.7946 0.0465 37 1 3.6624 3.3688 0.8926 38 1 3.8043 1.3344 2.1374 39 1 3.4570 -0.2198 1.3421 40 1 5.6714 -0.1448 0.2288 41 1 6.0187 1.4092 1.0241 42 1 5.4454 -1.1069 2.4488 43 1 7.6031 -1.1421 1.3316 44 1 7.9510 0.4116 2.1273 45 1 9.4665 -2.2427 2.3953 46 1 9.9528 -0.7704 3.2694 47 1 12.8230 -3.0401 3.6840 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335897708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:25:32 Heat of formation + Delta-G solvation = -49.893320 kcal Electronic energy + Delta-G solvation = -23544.477560 eV Core-core repulsion = 20146.827857 eV Total energy + Delta-G solvation = -3397.649703 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.90466 -38.85546 -37.53340 -36.40426 -35.47269 -34.84693 -33.31641 -30.83187 -30.10348 -28.22624 -26.47345 -25.75201 -24.09358 -23.48519 -22.77510 -22.39896 -20.94069 -18.66541 -18.35359 -17.63445 -17.37973 -16.69163 -16.59120 -16.35955 -15.80649 -15.68948 -15.56632 -15.26103 -14.96179 -14.71992 -14.34951 -14.15849 -14.09311 -13.79668 -13.72124 -13.35102 -13.27186 -13.11299 -12.98562 -12.65754 -12.60328 -12.50086 -12.38073 -12.24772 -12.16538 -11.90921 -11.71950 -11.54486 -11.38031 -11.30003 -11.11444 -10.55911 -10.55478 -9.44559 -9.33312 -8.19832 -6.27899 1.38950 1.42254 1.52470 2.06091 2.12941 2.41097 2.55828 2.91294 3.15676 3.30378 3.43832 3.73710 3.86470 3.90481 4.09946 4.14079 4.20250 4.24972 4.29800 4.39694 4.40415 4.45911 4.54605 4.63387 4.68428 4.75380 4.76423 4.82607 4.83859 4.88321 4.95296 4.99510 5.03616 5.04101 5.20512 5.27437 5.39578 5.47341 5.62216 5.79164 5.87308 5.97432 6.05120 6.17376 6.21553 6.52985 6.83437 6.93393 7.40880 8.91319 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.027455 B = 0.002397 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.620212 B =11680.461844 C =11996.415306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.050 3.950 4 H 0.036 0.964 5 C 0.067 3.933 6 O -0.406 6.406 7 C 0.063 3.937 8 C 0.015 3.985 9 N -0.534 5.534 10 C 0.059 3.941 11 C 0.072 3.928 12 N -0.702 5.702 13 C 0.082 3.918 14 C 0.020 3.980 15 H 0.122 0.878 16 C 0.266 3.734 17 N -0.517 5.517 18 C 0.037 3.963 19 C -0.537 4.537 20 H 0.054 0.946 21 C 0.010 3.990 22 N -0.924 5.924 23 Si 0.949 3.051 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.286 1.286 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.030 0.970 38 H 0.027 0.973 39 H 0.091 0.909 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.351 0.649 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.037 0.963 46 H 0.000 1.000 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.147 6.146 -14.262 27.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.058 4.058 4 H 0.054 0.946 5 C -0.009 4.009 6 O -0.325 6.325 7 C -0.013 4.013 8 C -0.113 4.113 9 N -0.259 5.259 10 C -0.069 4.069 11 C -0.057 4.057 12 N -0.335 5.335 13 C -0.049 4.049 14 C -0.002 4.002 15 H 0.140 0.860 16 C -0.050 4.050 17 N -0.195 5.195 18 C -0.002 4.002 19 C -0.576 4.576 20 H 0.073 0.927 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.774 3.226 24 H -0.194 1.194 25 H -0.197 1.197 26 H -0.212 1.212 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.129 0.871 36 H 0.112 0.888 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.170 0.830 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.018 0.982 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.019 7.638 -13.008 26.691 hybrid contribution 0.830 -1.121 0.824 1.620 sum -21.189 6.517 -12.184 25.296 Atomic orbital electron populations 1.21802 0.94279 1.02628 1.02240 1.21581 0.96623 0.93933 1.03117 1.22369 0.87232 0.98021 0.98217 0.94639 1.22883 0.99525 0.82505 0.96006 1.87958 1.21402 1.28401 1.94749 1.22773 0.80365 1.01924 0.96272 1.22865 1.01552 0.88688 0.98200 1.62188 1.08729 1.14962 1.40044 1.22068 0.95378 0.99350 0.90132 1.21770 0.94382 0.98651 0.90922 1.60353 1.03673 1.29138 1.40323 1.21829 0.88273 0.99748 0.95018 1.19198 1.00326 0.94692 0.85939 0.86041 1.29446 0.89754 0.92180 0.93653 1.81024 1.12411 1.12894 1.13123 1.18998 0.88366 0.95630 0.97178 1.21590 0.96494 1.32159 1.07315 0.92741 1.25720 0.96968 0.97604 0.98569 1.70038 1.05086 1.46726 1.34559 0.85640 0.78151 0.78921 0.79841 1.19364 1.19748 1.21229 0.92948 0.91564 0.91612 0.91439 0.90703 0.91835 0.87046 0.91703 0.87131 0.88841 0.95133 0.95480 0.89042 0.93478 0.91876 0.83004 0.91314 0.91450 0.94492 0.98190 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.57 71.98 0.69 -0.79 16 2 C -0.11 -1.43 5.25 30.59 0.16 -1.27 16 3 C 0.05 0.79 2.08 44.93 0.09 0.88 16 4 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 5 C 0.07 1.00 5.91 72.02 0.43 1.42 16 6 O -0.41 -7.71 10.83 -148.98 -1.61 -9.33 16 7 C 0.06 0.99 7.01 72.02 0.50 1.50 16 8 C 0.02 0.26 5.46 86.32 0.47 0.74 16 9 N -0.53 -9.35 4.51 -869.96 -3.93 -13.27 16 10 C 0.06 1.08 5.05 86.30 0.44 1.52 16 11 C 0.07 1.44 5.69 86.30 0.49 1.93 16 12 N -0.70 -16.39 6.20 -513.91 -3.19 -19.58 16 13 C 0.08 2.22 5.05 86.30 0.44 2.65 16 14 C 0.02 0.71 2.35 -12.60 -0.03 0.68 16 15 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 16 C 0.27 10.90 13.67 89.43 1.22 12.13 16 17 N -0.52 -23.45 18.54 20.02 0.37 -23.08 16 18 C 0.04 1.69 4.42 29.85 0.13 1.82 16 19 C -0.54 -28.26 8.60 25.60 0.22 -28.04 16 20 H 0.05 2.84 7.59 -2.91 -0.02 2.82 16 21 C 0.01 0.56 5.46 84.65 0.46 1.02 16 22 N -0.92 -52.89 13.29 21.45 0.28 -52.61 16 23 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.52 6.68 -2.39 -0.02 0.51 16 30 H 0.07 0.89 5.97 -2.39 -0.01 0.88 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.11 1.28 6.72 -2.39 -0.02 1.27 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.56 6.52 -2.39 -0.02 1.54 16 37 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.03 0.60 8.08 -2.38 -0.02 0.58 16 39 H 0.09 1.50 5.58 -2.39 -0.01 1.49 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 1.36 6.63 -2.39 -0.02 1.34 16 42 H 0.35 7.00 8.73 -89.70 -0.78 6.22 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 47 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -64.74 374.59 -0.17 -64.91 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.16 Total: 11.45 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 5.71 Total: -3.81 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -6.46 Total: -108.54 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -1.61 Total: -9.33 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -64.74 -0.17 -64.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335897708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.012 kcal (2) G-P(sol) polarization free energy of solvation -64.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds