Wall clock time and date at job start Fri Apr 10 2020 20:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46393 * 2 1 4 4 N 1.46894 * 109.47216 * 119.99368 * 2 1 3 5 5 C 1.53003 * 109.47320 * 240.00318 * 2 1 3 6 6 H 1.08997 * 109.69707 * 183.42315 * 5 2 1 7 7 C 1.53192 * 109.58222 * 303.77771 * 5 2 1 8 8 C 1.53040 * 109.30957 * 174.42509 * 7 5 2 9 9 C 1.53042 * 109.53889 * 298.63475 * 8 7 5 10 10 C 1.53189 * 109.31342 * 61.36317 * 9 8 7 11 11 N 1.46921 * 109.58684 * 63.06484 * 5 2 1 12 12 C 1.34777 * 120.63267 * 6.62856 * 11 5 2 13 13 O 1.21584 * 119.99980 * 6.36222 * 12 11 5 14 14 N 1.34779 * 120.00201 * 186.36081 * 12 11 5 15 15 C 1.46497 * 120.00390 * 185.32525 * 14 12 11 16 16 C 1.52995 * 109.47324 * 175.00905 * 15 14 12 17 17 C 1.50702 * 115.55093 * 306.84332 * 16 15 14 18 18 H 1.07996 * 119.99734 * 144.36162 * 17 16 15 19 19 C 1.37877 * 119.99855 * 324.36561 * 17 16 15 20 20 N 1.31514 * 120.00184 * 3.40732 * 19 17 16 21 21 Si 1.86796 * 119.99726 * 183.41036 * 19 17 16 22 22 H 1.48497 * 109.47198 * 60.00324 * 21 19 17 23 23 H 1.48501 * 109.46997 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47410 * 299.99799 * 21 19 17 25 25 C 1.52998 * 117.49880 * 161.17075 * 16 15 14 26 26 C 1.53006 * 117.49792 * 92.50993 * 16 15 14 27 27 H 1.09004 * 109.46735 * 189.49781 * 1 2 3 28 28 H 1.08994 * 109.47566 * 309.49447 * 1 2 3 29 29 H 1.09002 * 109.47332 * 69.50553 * 1 2 3 30 30 H 1.00900 * 110.99416 * 64.62917 * 4 2 1 31 31 H 1.00903 * 111.00000 * 188.57392 * 4 2 1 32 32 H 1.08996 * 109.50007 * 54.47313 * 7 5 2 33 33 H 1.09000 * 109.52239 * 294.38506 * 7 5 2 34 34 H 1.08998 * 109.45755 * 178.60926 * 8 7 5 35 35 H 1.09003 * 109.45178 * 58.64710 * 8 7 5 36 36 H 1.08999 * 109.49381 * 181.31884 * 9 8 7 37 37 H 1.08999 * 109.49043 * 301.41419 * 9 8 7 38 38 H 1.08996 * 109.58703 * 65.15485 * 10 9 8 39 39 H 1.08995 * 109.58722 * 185.58015 * 10 9 8 40 40 H 0.97006 * 119.99665 * 5.32189 * 14 12 11 41 41 H 1.08999 * 109.46684 * 295.00834 * 15 14 12 42 42 H 1.09001 * 109.47163 * 55.00617 * 15 14 12 43 43 H 0.96993 * 119.99984 * 185.00584 * 20 19 17 44 44 H 1.08995 * 117.49935 * 0.02562 * 25 16 15 45 45 H 1.08994 * 117.50031 * 145.02430 * 25 16 15 46 46 H 1.08998 * 117.50055 * 214.97900 * 26 16 15 47 47 H 1.09001 * 117.49876 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6923 1.1995 5 6 2.0401 -0.7212 -1.2493 6 1 3.1283 -0.7767 -1.2229 7 6 1.4547 -2.1359 -1.3004 8 6 1.8554 -2.8021 -2.6187 9 6 1.2851 -2.0007 -3.7912 10 6 1.8685 -0.5844 -3.7682 11 7 1.6131 0.0109 -2.4494 12 6 0.9994 1.2061 -2.3427 13 8 0.8973 1.7422 -1.2563 14 7 0.4987 1.8069 -3.4404 15 6 -0.0637 3.1562 -3.3447 16 6 -0.4444 3.6504 -4.7417 17 6 0.6491 3.5803 -5.7764 18 1 0.4080 3.3407 -6.8015 19 6 1.9573 3.8218 -5.4142 20 7 2.2599 4.0473 -4.1543 21 14 3.2998 3.8290 -6.7130 22 1 3.0072 4.8788 -7.7216 23 1 4.6085 4.1116 -6.0705 24 1 3.3512 2.5028 -7.3792 25 6 -1.4308 4.8163 -4.8342 26 6 -1.8791 3.4022 -5.2122 27 1 -0.3633 -1.0136 0.1696 28 1 -0.3634 0.6535 0.7930 29 1 -0.3634 0.3598 -0.9626 30 1 1.7597 -1.6672 1.1857 31 1 3.0185 -0.5859 1.2960 32 1 0.3680 -2.0826 -1.2353 33 1 1.8411 -2.7204 -0.4654 34 1 1.4609 -3.8177 -2.6469 35 1 2.9424 -2.8326 -2.6943 36 1 1.5511 -2.4886 -4.7288 37 1 0.2000 -1.9487 -3.7025 38 1 2.9427 -0.6288 -3.9473 39 1 1.3919 0.0196 -4.5402 40 1 0.5109 1.3459 -4.2938 41 1 -0.9512 3.1359 -2.7122 42 1 0.6764 3.8285 -2.9107 43 1 3.1668 4.2887 -3.9091 44 1 -1.8082 5.2316 -3.8998 45 1 -1.2891 5.5324 -5.6436 46 1 -2.0320 3.1887 -6.2701 47 1 -2.5517 2.8873 -4.5263 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418128587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:23 Heat of formation + Delta-G solvation = 26.464267 kcal Electronic energy + Delta-G solvation = -26272.712137 eV Core-core repulsion = 22878.373547 eV Total energy + Delta-G solvation = -3394.338590 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49359 -37.55426 -36.49597 -35.52836 -32.94823 -32.33460 -32.03584 -30.09176 -28.13129 -26.24874 -25.47950 -24.28196 -23.68687 -21.26578 -20.94522 -20.28194 -19.22457 -18.69601 -17.28771 -16.21432 -15.84557 -15.58287 -15.23029 -14.76575 -14.62496 -14.32342 -14.04344 -13.81755 -13.76191 -13.32493 -13.05944 -12.96850 -12.36173 -12.27756 -11.81415 -11.60315 -11.51726 -11.26562 -11.11774 -10.95391 -10.85033 -10.78362 -10.64422 -10.52910 -10.47873 -10.38647 -10.17007 -9.63928 -9.00728 -8.81908 -8.62949 -8.41343 -8.26622 -8.11891 -7.59235 -6.00316 -4.19505 3.19380 3.28110 3.28711 3.30232 4.05267 4.27938 4.61164 4.78266 4.84419 4.87936 4.97945 5.06077 5.16221 5.35416 5.37420 5.47734 5.55127 5.65530 5.78377 5.83377 5.93889 5.96082 6.02299 6.06200 6.09699 6.16966 6.32255 6.35823 6.45932 6.55129 6.62587 6.67314 6.76332 6.87625 6.93344 7.03308 7.16672 7.26860 7.42345 7.57053 7.67019 7.71351 7.85237 7.99793 8.32022 8.76793 8.97776 9.43351 9.55440 10.89320 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.015962 B = 0.005658 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.729318 B = 4947.218632 C = 5473.950963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.084 3.916 3 H 0.130 0.870 4 N -0.846 5.846 5 C 0.137 3.863 6 H 0.056 0.944 7 C -0.137 4.137 8 C -0.116 4.116 9 C -0.135 4.135 10 C 0.113 3.887 11 N -0.629 5.629 12 C 0.706 3.294 13 O -0.591 6.591 14 N -0.699 5.699 15 C 0.186 3.814 16 C 0.036 3.964 17 C -0.497 4.497 18 H 0.059 0.941 19 C 0.076 3.924 20 N -0.862 5.862 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.198 4.198 26 C -0.213 4.213 27 H 0.024 0.976 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.326 0.674 31 H 0.333 0.667 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.391 0.609 41 H 0.015 0.985 42 H 0.111 0.889 43 H 0.262 0.738 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.131 -12.643 2.929 12.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.026 4.026 3 H 0.147 0.853 4 N -0.375 5.375 5 C 0.030 3.970 6 H 0.074 0.926 7 C -0.175 4.175 8 C -0.153 4.153 9 C -0.173 4.173 10 C -0.011 4.011 11 N -0.368 5.368 12 C 0.408 3.592 13 O -0.472 6.472 14 N -0.351 5.351 15 C 0.062 3.938 16 C 0.035 3.965 17 C -0.535 4.535 18 H 0.077 0.923 19 C -0.128 4.128 20 N -0.498 5.498 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.237 4.237 26 C -0.250 4.250 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.138 0.862 31 H 0.145 0.855 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.227 0.773 41 H 0.033 0.967 42 H 0.128 0.872 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.247 -11.683 4.244 12.432 hybrid contribution 1.356 -0.812 -2.052 2.590 sum 1.109 -12.494 2.192 12.734 Atomic orbital electron populations 1.21855 0.94203 0.98315 1.02797 1.22332 0.96777 0.99599 0.83930 0.85272 1.59274 1.18559 1.17791 1.41899 1.21889 0.97305 0.91109 0.86691 0.92606 1.22076 1.02171 0.95942 0.97326 1.21471 1.00595 0.98536 0.94743 1.21932 1.01109 0.95829 0.98458 1.21551 1.00334 0.93728 0.85465 1.47132 1.63559 1.20437 1.05704 1.15778 0.78434 0.79985 0.84984 1.90798 1.64991 1.66048 1.25320 1.45041 1.62693 1.18265 1.09129 1.20871 0.95925 0.82222 0.94787 1.19260 0.87108 0.95962 0.94128 1.20435 0.90096 1.49202 0.93725 0.92327 1.24974 0.98292 0.94526 0.95057 1.69898 1.19937 1.44854 1.15078 0.86698 0.81148 0.78619 0.81768 1.20251 1.21302 1.20249 1.22929 1.08569 0.91344 1.00855 1.22955 1.01910 1.00359 0.99793 0.95756 0.93107 0.91219 0.86169 0.85515 0.90858 0.91733 0.92120 0.92186 0.91082 0.91495 0.92119 0.89610 0.77338 0.96711 0.87177 0.92744 0.91457 0.90292 0.90752 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 7.46 37.16 0.28 -1.65 16 2 C 0.08 1.33 2.68 -67.71 -0.18 1.15 16 3 H 0.13 2.58 5.81 -52.58 -0.31 2.28 16 4 N -0.85 -11.01 9.23 -4.66 -0.04 -11.05 16 5 C 0.14 1.97 2.88 -67.60 -0.19 1.77 16 6 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 7 C -0.14 -1.57 4.70 -26.61 -0.12 -1.70 16 8 C -0.12 -1.20 5.88 -26.69 -0.16 -1.36 16 9 C -0.13 -1.53 6.08 -26.61 -0.16 -1.70 16 10 C 0.11 1.63 6.43 -3.71 -0.02 1.60 16 11 N -0.63 -10.45 2.91 -170.91 -0.50 -10.94 16 12 C 0.71 14.43 6.63 -86.92 -0.58 13.85 16 13 O -0.59 -13.36 10.32 5.29 0.05 -13.31 16 14 N -0.70 -14.81 4.88 -65.23 -0.32 -15.13 16 15 C 0.19 4.34 4.61 -4.05 -0.02 4.32 16 16 C 0.04 0.84 2.04 -155.66 -0.32 0.52 16 17 C -0.50 -12.38 8.39 -34.44 -0.29 -12.67 16 18 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 19 C 0.08 1.91 5.28 -17.82 -0.09 1.82 16 20 N -0.86 -22.60 10.15 55.43 0.56 -22.04 16 21 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 C -0.20 -4.30 9.96 -26.69 -0.27 -4.57 16 26 C -0.21 -4.39 9.92 -26.69 -0.26 -4.65 16 27 H 0.02 0.36 6.82 -51.93 -0.35 0.00 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.33 5.02 -51.93 -0.26 1.07 16 30 H 0.33 3.64 7.30 -39.29 -0.29 3.36 16 31 H 0.33 3.85 9.08 -39.29 -0.36 3.50 16 32 H 0.07 0.93 6.29 -51.93 -0.33 0.60 16 33 H 0.06 0.63 6.92 -51.93 -0.36 0.27 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.33 5.59 -51.93 -0.29 1.04 16 40 H 0.39 7.97 5.59 -40.82 -0.23 7.74 16 41 H 0.01 0.34 8.08 -51.93 -0.42 -0.08 16 42 H 0.11 2.96 6.00 -51.93 -0.31 2.64 16 43 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 45 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 46 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 47 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 349.46 15.07 5.27 5.27 Total: -1.00 -26.71 349.46 -10.08 -36.79 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: -7.69 Total: 18.85 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.39 Total: -3.24 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.30 Total: -59.16 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.05 Total: -13.31 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.71 -10.08 -36.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418128587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.257 kcal (2) G-P(sol) polarization free energy of solvation -26.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds