Wall clock time and date at job start Fri Apr 10 2020 20:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.53004 * 109.46619 * 66.04574 * 3 2 1 5 5 C 1.53003 * 117.49726 * 243.62378 * 4 3 2 6 6 C 1.53006 * 117.49468 * 174.99881 * 4 3 2 7 7 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 8 8 C 1.52996 * 109.47022 * 293.95609 * 7 2 1 9 9 H 1.08998 * 110.88897 * 54.29883 * 8 7 2 10 10 C 1.55163 * 111.00371 * 178.18309 * 8 7 2 11 11 C 1.54324 * 102.94524 * 153.57646 * 10 8 7 12 12 N 1.47020 * 107.26772 * 337.80435 * 11 10 8 13 13 C 1.34781 * 125.64741 * 178.90829 * 12 11 10 14 14 O 1.21583 * 120.00047 * 180.02562 * 13 12 11 15 15 N 1.34772 * 119.99761 * 0.02562 * 13 12 11 16 16 C 1.46501 * 120.00299 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47658 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00010 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00313 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00156 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99831 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46991 * 90.00008 * 21 19 17 23 23 H 1.48494 * 109.47292 * 209.99659 * 21 19 17 24 24 H 1.48500 * 109.47342 * 329.99990 * 21 19 17 25 25 C 1.47463 * 108.72799 * 358.97610 * 12 11 10 26 26 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 27 27 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 28 28 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 29 29 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 30 30 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 31 31 H 1.08991 * 115.55314 * 29.33385 * 4 3 2 32 32 H 1.09001 * 117.50149 * 359.97438 * 5 4 3 33 33 H 1.08995 * 117.49545 * 145.02706 * 5 4 3 34 34 H 1.09000 * 117.49822 * 214.97684 * 6 4 3 35 35 H 1.08997 * 117.49691 * 0.02562 * 6 4 3 36 36 H 1.08997 * 109.46995 * 53.95554 * 7 2 1 37 37 H 1.09001 * 109.46848 * 173.95560 * 7 2 1 38 38 H 1.09007 * 110.71715 * 271.93851 * 10 8 7 39 39 H 1.09000 * 110.71978 * 35.02775 * 10 8 7 40 40 H 1.08995 * 109.88041 * 97.22205 * 11 10 8 41 41 H 1.08992 * 109.88226 * 218.38750 * 11 10 8 42 42 H 0.97006 * 120.00157 * 0.02562 * 15 13 12 43 43 H 1.09008 * 109.46974 * 300.00065 * 16 15 13 44 44 H 1.08996 * 109.47054 * 59.99380 * 16 15 13 45 45 H 0.96996 * 119.99912 * 180.02562 * 20 19 17 46 46 H 1.08993 * 110.35260 * 265.25526 * 25 12 11 47 47 H 1.08998 * 110.41196 * 142.91673 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 6 0.7061 3.2738 1.2497 6 6 2.1921 3.4597 1.5632 7 6 1.9954 -0.7660 -1.1377 8 6 1.6314 -2.2426 -0.9704 9 1 0.5575 -2.3645 -0.8290 10 6 2.1319 -3.0790 -2.1777 11 6 2.3139 -4.4865 -1.5714 12 7 2.4717 -4.3191 -0.1193 13 6 2.6340 -5.3159 0.7732 14 8 2.7549 -5.0596 1.9555 15 7 2.6624 -6.5968 0.3550 16 6 2.8382 -7.6804 1.3251 17 6 2.8352 -9.0045 0.6055 18 1 2.7139 -9.0358 -0.4672 19 6 2.9872 -10.1759 1.3165 20 7 2.9840 -11.3314 0.6885 21 14 3.1977 -10.1218 3.1718 22 1 1.8650 -10.1906 3.8234 23 1 4.0231 -11.2757 3.6102 24 1 3.8722 -8.8561 3.5568 25 6 2.4214 -2.8803 0.1997 26 1 -0.3634 -1.0252 0.0708 27 1 -0.3633 0.4513 -0.9233 28 1 -0.3633 0.5740 0.8525 29 1 3.0798 1.3443 -0.1082 30 1 1.5612 1.9273 -0.8309 31 1 1.5327 1.3973 2.1801 32 1 0.3569 3.5857 0.2654 33 1 -0.0019 3.4141 2.0665 34 1 2.4616 3.7225 2.5862 35 1 2.8199 3.8938 0.7850 36 1 1.5611 -0.3872 -2.0628 37 1 3.0797 -0.6611 -1.1757 38 1 1.3854 -3.0947 -2.9719 39 1 3.0801 -2.6905 -2.5493 40 1 1.4354 -5.0967 -1.7810 41 1 3.2034 -4.9578 -1.9891 42 1 2.5663 -6.8013 -0.5884 43 1 3.7877 -7.5521 1.8450 44 1 2.0225 -7.6572 2.0476 45 1 3.0906 -12.1556 1.1887 46 1 3.4288 -2.4670 0.2468 47 1 1.8995 -2.7180 1.1427 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426418237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:27 Heat of formation + Delta-G solvation = 1.049111 kcal Electronic energy + Delta-G solvation = -23729.861184 eV Core-core repulsion = 20334.420510 eV Total energy + Delta-G solvation = -3395.440674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.92260 -38.81063 -37.51938 -35.93285 -34.18976 -32.45037 -31.69909 -29.36391 -28.04506 -27.92165 -26.30396 -23.79119 -22.72169 -22.23640 -21.73727 -20.61580 -20.14441 -19.40576 -17.97108 -16.66648 -16.31760 -16.29510 -15.60946 -15.22956 -15.19652 -14.69814 -14.41277 -14.29338 -13.73018 -13.48327 -13.28176 -13.11415 -12.75868 -12.64555 -12.44554 -12.28863 -12.06937 -11.97366 -11.86844 -11.76121 -11.65737 -11.19827 -11.03969 -10.89148 -10.73843 -10.70437 -10.53442 -10.27522 -9.91242 -9.50834 -9.39566 -8.72641 -8.61779 -8.40379 -7.86632 -6.16586 -4.18022 3.18115 3.32009 3.36053 3.38826 3.48281 3.58593 3.86509 4.37288 4.38783 4.45564 4.50824 4.56731 4.63617 4.69567 4.89095 4.94152 5.05063 5.07816 5.15842 5.19145 5.24139 5.26410 5.27928 5.36677 5.45366 5.51101 5.54118 5.54954 5.67546 5.71276 5.74549 5.77562 5.93119 5.97456 6.10230 6.18385 6.53694 6.75231 6.77938 6.88159 7.17930 7.34804 7.48192 7.68775 8.32080 8.74314 8.86082 9.28956 9.46212 10.95389 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.027774 B = 0.002595 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.888420 B =10788.059695 C =11488.412153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.539 5.539 3 C 0.087 3.913 4 C -0.145 4.145 5 C -0.185 4.185 6 C -0.179 4.179 7 C 0.068 3.932 8 C -0.100 4.100 9 H 0.086 0.914 10 C -0.123 4.123 11 C 0.101 3.899 12 N -0.646 5.646 13 C 0.713 3.287 14 O -0.601 6.601 15 N -0.721 5.721 16 C 0.238 3.762 17 C -0.540 4.540 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.894 5.894 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.260 1.260 25 C 0.145 3.855 26 H 0.071 0.929 27 H 0.023 0.977 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.392 0.608 43 H 0.023 0.977 44 H 0.018 0.982 45 H 0.267 0.733 46 H 0.059 0.941 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.008 28.185 -6.680 29.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.262 5.262 3 C -0.041 4.041 4 C -0.164 4.164 5 C -0.222 4.222 6 C -0.216 4.216 7 C -0.060 4.060 8 C -0.119 4.119 9 H 0.104 0.896 10 C -0.162 4.162 11 C -0.022 4.022 12 N -0.387 5.387 13 C 0.414 3.586 14 O -0.480 6.480 15 N -0.374 5.374 16 C 0.115 3.885 17 C -0.578 4.578 18 H 0.096 0.904 19 C -0.127 4.127 20 N -0.532 5.532 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.184 1.184 25 C 0.022 3.978 26 H 0.089 0.911 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.132 0.868 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.225 0.775 43 H 0.041 0.959 44 H 0.036 0.964 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.719 27.807 -5.263 28.544 hybrid contribution -0.268 0.128 -0.351 0.460 sum -3.987 27.936 -5.614 28.772 Atomic orbital electron populations 1.22445 0.87214 1.02455 1.00446 1.61915 1.08185 1.13007 1.43098 1.21666 0.99974 0.87916 0.94523 1.22314 1.03964 0.90209 0.99881 1.23063 0.93324 1.03030 1.02808 1.22949 0.96408 0.99542 1.02713 1.22059 1.00348 0.92360 0.91216 1.22414 1.00797 0.93318 0.95419 0.89616 1.22626 1.01984 0.94269 0.97290 1.21902 1.01370 0.97456 0.81505 1.47641 1.78668 1.06146 1.06226 1.15647 0.78332 0.80519 0.84067 1.90863 1.59017 1.83085 1.15022 1.45402 1.76283 1.03935 1.11747 1.19358 0.96342 0.84246 0.88523 1.21091 1.52061 0.88595 0.96091 0.90361 1.24782 0.94011 0.95043 0.98835 1.69882 1.49364 0.97628 1.36283 0.86807 0.79006 0.78426 0.85416 1.19863 1.20966 1.18387 1.21852 0.99312 0.78550 0.98098 0.91051 0.95885 0.91108 0.90369 0.94856 0.86761 0.89130 0.88898 0.88688 0.88933 0.94378 0.90320 0.90224 0.90522 0.91712 0.91642 0.77512 0.95931 0.96392 0.92322 0.92257 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.17 60.07 0.55 0.73 16 2 N -0.54 -4.63 4.65 -242.91 -1.13 -5.76 16 3 C 0.09 0.65 5.24 -3.82 -0.02 0.63 16 4 C -0.15 -1.08 4.74 -90.61 -0.43 -1.51 16 5 C -0.19 -1.19 10.18 -26.72 -0.27 -1.46 16 6 C -0.18 -1.15 10.25 -26.72 -0.27 -1.42 16 7 C 0.07 0.54 4.41 -3.82 -0.02 0.52 16 8 C -0.10 -0.95 2.94 -88.47 -0.26 -1.21 16 9 H 0.09 0.85 6.41 -51.93 -0.33 0.51 16 10 C -0.12 -1.06 6.42 -24.89 -0.16 -1.22 16 11 C 0.10 1.22 6.15 -3.06 -0.02 1.20 16 12 N -0.65 -10.50 3.33 -176.21 -0.59 -11.09 16 13 C 0.71 15.33 8.49 -86.92 -0.74 14.60 16 14 O -0.60 -15.27 16.60 5.29 0.09 -15.18 16 15 N -0.72 -15.93 5.51 -66.41 -0.37 -16.29 16 16 C 0.24 6.17 4.50 -5.19 -0.02 6.14 16 17 C -0.54 -15.25 9.83 -34.44 -0.34 -15.59 16 18 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 19 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 20 N -0.89 -26.93 13.96 55.43 0.77 -26.16 16 21 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 25 C 0.15 1.98 6.27 -2.50 -0.02 1.96 16 26 H 0.07 0.60 6.39 -51.93 -0.33 0.27 16 27 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.55 7.16 -51.93 -0.37 0.18 16 29 H 0.08 0.57 7.93 -51.93 -0.41 0.16 16 30 H 0.03 0.23 7.85 -51.93 -0.41 -0.17 16 31 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 0.54 8.03 -51.93 -0.42 0.12 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 37 H 0.08 0.61 7.82 -51.93 -0.41 0.20 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.58 8.04 -51.93 -0.42 0.16 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.39 7.70 7.31 -40.82 -0.30 7.41 16 43 H 0.02 0.62 7.20 -51.92 -0.37 0.24 16 44 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 47 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -33.47 373.44 -10.75 -44.22 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.37 Total: 1.82 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -2.11 Total: 5.51 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -1.31 Total: -59.30 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.09 Total: -15.18 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.47 -10.75 -44.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.270 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds