Wall clock time and date at job start Fri Apr 10 2020 20:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00297 * 2 1 4 4 C 1.53001 * 109.46999 * 293.95447 * 3 2 1 5 5 C 1.53000 * 117.49676 * 243.74820 * 4 3 2 6 6 C 1.52994 * 117.49943 * 175.08658 * 4 3 2 7 7 C 1.46901 * 110.99887 * 123.95353 * 2 1 3 8 8 C 1.53003 * 109.47081 * 66.04264 * 7 2 1 9 9 H 1.08992 * 110.91911 * 302.55188 * 8 7 2 10 10 C 1.55160 * 111.00369 * 178.65119 * 8 7 2 11 11 C 1.54315 * 102.86283 * 206.23121 * 10 8 7 12 12 N 1.47023 * 107.27455 * 22.52731 * 11 10 8 13 13 C 1.34779 * 125.64734 * 180.97251 * 12 11 10 14 14 O 1.21578 * 120.00007 * 179.69061 * 13 12 11 15 15 N 1.34782 * 119.99815 * 359.68738 * 13 12 11 16 16 C 1.46497 * 120.00016 * 180.02562 * 15 13 12 17 17 C 1.50694 * 109.47115 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.47422 * 108.70576 * 0.70392 * 12 11 10 26 26 H 1.09001 * 109.47110 * 296.04841 * 1 2 3 27 27 H 1.08997 * 109.46998 * 56.04346 * 1 2 3 28 28 H 1.08999 * 109.47711 * 176.04817 * 1 2 3 29 29 H 1.09002 * 109.47112 * 53.95295 * 3 2 1 30 30 H 1.09001 * 109.47376 * 173.95383 * 3 2 1 31 31 H 1.09003 * 115.55095 * 29.41422 * 4 3 2 32 32 H 1.08999 * 117.49932 * 359.97438 * 5 4 3 33 33 H 1.08996 * 117.49978 * 145.02229 * 5 4 3 34 34 H 1.09001 * 117.50294 * 214.97947 * 6 4 3 35 35 H 1.09003 * 117.50258 * 359.97438 * 6 4 3 36 36 H 1.09003 * 109.47250 * 306.04776 * 7 2 1 37 37 H 1.09000 * 109.47210 * 186.04698 * 7 2 1 38 38 H 1.09008 * 110.72019 * 324.78768 * 10 8 7 39 39 H 1.08993 * 110.71989 * 87.88400 * 10 8 7 40 40 H 1.08998 * 109.98560 * 263.04770 * 11 10 8 41 41 H 1.09001 * 109.77278 * 141.88265 * 11 10 8 42 42 H 0.97001 * 119.99765 * 0.02562 * 15 13 12 43 43 H 1.09007 * 109.47078 * 59.99547 * 16 15 13 44 44 H 1.09003 * 109.46733 * 300.00270 * 16 15 13 45 45 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 46 46 H 1.08994 * 110.36694 * 94.93752 * 25 12 11 47 47 H 1.09000 * 110.36659 * 217.15438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.7806 2.4747 -2.2383 6 6 1.9920 3.5367 -1.4679 7 6 1.9954 -0.7660 1.1376 8 6 1.6313 -2.2426 0.9704 9 1 0.5523 -2.3701 0.8845 10 6 2.2003 -3.0914 2.1380 11 6 2.3522 -4.4900 1.5038 12 7 2.4368 -4.3024 0.0481 13 6 2.5568 -5.2865 -0.8650 14 8 2.6126 -5.0140 -2.0486 15 7 2.6150 -6.5726 -0.4660 16 6 2.7460 -7.6422 -1.4584 17 6 2.7890 -8.9754 -0.7573 18 1 2.7255 -9.0215 0.3198 19 6 2.9104 -10.1365 -1.4910 20 7 2.9881 -10.0805 -2.8026 21 14 2.9644 -11.7891 -0.6218 22 1 3.0971 -12.8734 -1.6278 23 1 4.1268 -11.8250 0.3015 24 1 1.7116 -11.9828 0.1517 25 6 2.3622 -2.8601 -0.2479 26 1 -0.3633 0.4513 0.9233 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0708 29 1 1.5611 1.9273 0.8309 30 1 3.0798 1.3443 0.1082 31 1 0.7099 1.7139 -1.7882 32 1 3.7958 2.2609 -1.9041 33 1 2.6148 2.4062 -3.3134 34 1 1.3078 4.1665 -2.0365 35 1 2.4881 4.0214 -0.6270 36 1 1.5610 -0.3873 2.0628 37 1 3.0797 -0.6611 1.1757 38 1 3.1663 -2.7037 2.4616 39 1 1.4988 -3.1196 2.9717 40 1 1.4869 -5.1060 1.7486 41 1 3.2628 -4.9640 1.8701 42 1 2.5701 -6.7899 0.4783 43 1 3.6658 -7.5006 -2.0260 44 1 1.8929 -7.6151 -2.1365 45 1 3.0739 -10.8973 -3.3187 46 1 3.3634 -2.4400 -0.3426 47 1 1.7919 -2.6893 -1.1610 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426418238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:30 Heat of formation + Delta-G solvation = -1.091001 kcal Electronic energy + Delta-G solvation = -23718.402154 eV Core-core repulsion = 20322.868678 eV Total energy + Delta-G solvation = -3395.533476 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.83279 -38.71626 -37.41094 -35.90121 -34.06542 -32.42582 -31.58329 -29.31751 -27.85191 -27.49028 -26.18427 -23.83205 -22.64887 -22.29029 -22.01136 -20.46984 -20.11358 -19.21346 -17.88810 -16.62773 -16.29708 -15.91024 -15.54342 -15.24511 -15.09480 -14.55753 -14.41098 -14.30715 -13.70054 -13.56495 -13.15871 -13.00894 -12.63154 -12.59142 -12.36525 -12.06452 -11.92293 -11.80314 -11.75117 -11.59677 -11.51954 -11.06037 -11.00011 -10.89840 -10.82980 -10.67530 -10.51447 -10.25298 -10.24655 -9.33152 -9.30283 -8.67163 -8.54854 -8.25873 -7.63282 -6.10420 -4.16806 3.28100 3.28790 3.33729 3.35788 3.37898 3.71760 4.01574 4.35659 4.39635 4.50587 4.57722 4.63085 4.68765 4.74972 5.00832 5.02950 5.05975 5.12937 5.19702 5.24276 5.25241 5.30379 5.34651 5.39897 5.44985 5.55193 5.58263 5.64722 5.70863 5.72379 5.78592 5.83940 5.97868 6.02463 6.18680 6.24244 6.65219 6.78251 6.81499 7.29347 7.58863 7.63905 7.66727 7.97284 8.10114 8.82279 8.99801 9.40672 9.55700 10.99839 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.029727 B = 0.002514 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.691172 B =11134.975835 C =11763.332376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.537 5.537 3 C 0.087 3.913 4 C -0.148 4.148 5 C -0.173 4.173 6 C -0.185 4.185 7 C 0.069 3.931 8 C -0.100 4.100 9 H 0.084 0.916 10 C -0.123 4.123 11 C 0.103 3.897 12 N -0.648 5.648 13 C 0.711 3.289 14 O -0.597 6.597 15 N -0.728 5.728 16 C 0.267 3.733 17 C -0.541 4.541 18 H 0.061 0.939 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.285 1.285 23 H -0.276 1.276 24 H -0.276 1.276 25 C 0.146 3.854 26 H 0.024 0.976 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.385 0.615 43 H 0.024 0.976 44 H 0.024 0.976 45 H 0.266 0.734 46 H 0.058 0.942 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 24.728 11.299 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.261 5.261 3 C -0.040 4.040 4 C -0.166 4.166 5 C -0.210 4.210 6 C -0.222 4.222 7 C -0.059 4.059 8 C -0.119 4.119 9 H 0.103 0.897 10 C -0.162 4.162 11 C -0.021 4.021 12 N -0.389 5.389 13 C 0.412 3.588 14 O -0.476 6.476 15 N -0.380 5.380 16 C 0.146 3.854 17 C -0.579 4.579 18 H 0.079 0.921 19 C -0.141 4.141 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.211 1.211 23 H -0.201 1.201 24 H -0.201 1.201 25 C 0.023 3.977 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.218 0.782 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.151 24.444 9.710 26.490 hybrid contribution -0.273 -0.681 1.607 1.766 sum -3.424 23.764 11.316 26.543 Atomic orbital electron populations 1.22487 0.87360 1.02632 1.00349 1.61889 1.08050 1.13052 1.43103 1.21662 0.99834 0.87804 0.94749 1.22295 1.00317 0.95897 0.98089 1.23008 0.96638 1.03052 0.98291 1.22985 1.04221 0.91713 1.03317 1.22056 1.00296 0.92407 0.91140 1.22408 1.00730 0.93294 0.95514 0.89724 1.22622 1.01726 0.94394 0.97418 1.21866 1.01326 0.97324 0.81607 1.47686 1.79598 1.06259 1.05378 1.15692 0.78416 0.80627 0.84026 1.90872 1.59144 1.82559 1.15034 1.45725 1.76748 1.04350 1.11216 1.18970 0.97374 0.82171 0.86888 1.21187 1.52614 0.90694 0.93445 0.92076 1.24950 0.94851 0.99410 0.94855 1.69976 1.48550 1.28730 1.05027 0.86471 0.78614 0.82641 0.79127 1.21093 1.20111 1.20121 1.21803 0.99599 0.78653 0.97657 0.95793 0.91203 0.90895 0.94643 0.90649 0.87337 0.88742 0.88814 0.88901 0.89009 0.94427 0.90383 0.90571 0.90317 0.91894 0.91849 0.78233 0.95774 0.95775 0.92439 0.92350 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.16 60.06 0.55 0.71 16 2 N -0.54 -4.87 4.58 -242.92 -1.11 -5.98 16 3 C 0.09 0.69 5.24 -3.82 -0.02 0.67 16 4 C -0.15 -1.17 5.67 -90.62 -0.51 -1.69 16 5 C -0.17 -1.35 10.18 -26.69 -0.27 -1.62 16 6 C -0.18 -1.24 10.25 -26.70 -0.27 -1.52 16 7 C 0.07 0.57 4.41 -3.82 -0.02 0.56 16 8 C -0.10 -1.00 2.89 -88.47 -0.26 -1.25 16 9 H 0.08 0.87 6.54 -51.93 -0.34 0.53 16 10 C -0.12 -1.10 6.42 -24.90 -0.16 -1.26 16 11 C 0.10 1.28 6.14 -3.07 -0.02 1.26 16 12 N -0.65 -11.00 3.33 -176.25 -0.59 -11.59 16 13 C 0.71 16.06 8.49 -86.91 -0.74 15.32 16 14 O -0.60 -16.09 16.60 5.30 0.09 -16.00 16 15 N -0.73 -16.74 5.51 -66.42 -0.37 -17.10 16 16 C 0.27 7.45 5.43 -5.20 -0.03 7.42 16 17 C -0.54 -15.13 9.28 -34.44 -0.32 -15.45 16 18 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 21 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C 0.15 2.10 6.21 -2.53 -0.02 2.09 16 26 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.07 0.55 6.22 -51.93 -0.32 0.22 16 28 H 0.07 0.64 6.45 -51.93 -0.33 0.31 16 29 H 0.04 0.26 8.12 -51.93 -0.42 -0.16 16 30 H 0.08 0.58 7.66 -51.93 -0.40 0.18 16 31 H 0.11 0.91 6.36 -51.93 -0.33 0.58 16 32 H 0.09 0.72 8.03 -51.93 -0.42 0.30 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 37 H 0.08 0.63 7.89 -51.93 -0.41 0.22 16 38 H 0.08 0.60 8.04 -51.92 -0.42 0.18 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.39 7.70 7.31 -40.82 -0.30 7.40 16 43 H 0.02 0.74 8.14 -51.92 -0.42 0.32 16 44 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.06 0.84 8.00 -51.93 -0.42 0.42 16 47 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -33.76 375.35 -11.07 -44.82 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -8.28 Total: 3.00 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -2.18 Total: 6.92 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -1.33 Total: -60.60 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.09 Total: -16.00 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.76 -11.07 -44.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.733 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds