Wall clock time and date at job start Fri Apr 10 2020 20:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46906 * 109.46975 * 2 1 4 4 C 1.46896 * 110.99594 * 171.52692 * 3 2 1 5 5 C 1.53006 * 109.47013 * 293.94847 * 4 3 2 6 6 N 1.46502 * 109.46793 * 179.97438 * 5 4 3 7 7 C 1.34782 * 119.99447 * 180.02562 * 6 5 4 8 8 O 1.21585 * 120.00157 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99478 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99695 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47137 * 184.77427 * 10 9 7 12 12 C 1.50708 * 115.54673 * 294.48324 * 11 10 9 13 13 H 1.07991 * 119.99907 * 93.85989 * 12 11 10 14 14 C 1.37881 * 119.99559 * 273.58395 * 12 11 10 15 15 N 1.31504 * 120.00155 * 355.45979 * 14 12 11 16 16 Si 1.86800 * 119.99287 * 175.45950 * 14 12 11 17 17 H 1.48494 * 109.47652 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.46872 * 120.00401 * 16 14 12 19 19 H 1.48501 * 109.46944 * 239.99795 * 16 14 12 20 20 C 1.52996 * 117.50189 * 80.15288 * 11 10 9 21 21 C 1.52998 * 117.50221 * 148.81385 * 11 10 9 22 22 C 1.46898 * 110.99755 * 295.47969 * 3 2 1 23 23 C 1.53002 * 117.49558 * 242.58928 * 22 3 2 24 24 C 1.53003 * 117.49614 * 173.93296 * 22 3 2 25 25 H 1.09003 * 109.46780 * 305.91424 * 1 2 3 26 26 H 1.09000 * 109.47481 * 65.91264 * 1 2 3 27 27 H 1.09000 * 109.47154 * 185.92044 * 1 2 3 28 28 H 1.08998 * 109.46665 * 240.00144 * 2 1 3 29 29 H 1.08998 * 109.47115 * 120.00264 * 2 1 3 30 30 H 1.09004 * 109.47055 * 173.95770 * 4 3 2 31 31 H 1.08995 * 109.47531 * 53.95525 * 4 3 2 32 32 H 1.09005 * 109.46614 * 60.01086 * 5 4 3 33 33 H 1.08995 * 109.47525 * 300.00681 * 5 4 3 34 34 H 0.96996 * 120.00297 * 0.02562 * 6 5 4 35 35 H 0.97003 * 120.00252 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.47595 * 64.77588 * 10 9 7 37 37 H 1.09005 * 109.47242 * 304.76799 * 10 9 7 38 38 H 0.97008 * 120.00203 * 185.00254 * 15 14 12 39 39 H 1.09000 * 117.49787 * 215.00803 * 20 11 10 40 40 H 1.09005 * 117.49520 * 0.02562 * 20 11 10 41 41 H 1.09001 * 117.49978 * 359.97438 * 21 11 10 42 42 H 1.09001 * 117.50035 * 144.96859 * 21 11 10 43 43 H 1.08996 * 115.55634 * 28.26145 * 22 3 2 44 44 H 1.08999 * 117.50212 * 0.02562 * 23 22 3 45 45 H 1.08999 * 117.49577 * 145.02321 * 23 22 3 46 46 H 1.08993 * 117.50103 * 214.97946 * 24 22 3 47 47 H 1.09004 * 117.49804 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4740 1.4292 0.2021 5 6 3.8092 0.9246 1.6071 6 7 5.2597 0.9681 1.8084 7 6 5.7895 0.5671 2.9810 8 8 5.0638 0.1689 3.8716 9 7 7.1239 0.6075 3.1664 10 6 7.6999 0.1712 4.4407 11 6 9.2082 0.4282 4.4333 12 6 10.0001 -0.3792 3.4371 13 1 10.2193 0.0306 2.4624 14 6 10.4496 -1.6388 3.7725 15 7 10.2652 -2.1002 4.9901 16 14 11.3205 -2.6898 2.4972 17 1 11.4006 -1.9465 1.2142 18 1 12.6912 -3.0090 2.9713 19 1 10.5617 -3.9497 2.2923 20 6 9.6836 1.8527 4.7254 21 6 9.8764 0.7517 5.7711 22 6 1.6389 2.0780 -1.2380 23 6 2.7664 2.5665 -2.1496 24 6 1.9498 3.5729 -1.3351 25 1 -0.3633 0.6028 0.8323 26 1 -0.3634 0.4194 -0.9382 27 1 -0.3633 -1.0222 0.1060 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8253 2.4551 0.0911 31 1 3.9631 0.7956 -0.5378 32 1 3.4580 -0.1013 1.7181 33 1 3.3201 1.5582 2.3470 34 1 5.8387 1.2854 1.0978 35 1 7.7029 0.9249 2.4557 36 1 7.5135 -0.8939 4.5780 37 1 7.2404 0.7287 5.2570 38 1 10.6443 -2.9553 5.2474 39 1 10.5691 2.2061 4.1971 40 1 8.9218 2.6069 4.9233 41 1 9.2414 0.7819 6.6565 42 1 10.8886 0.3802 5.9310 43 1 0.7253 1.7220 -1.7142 44 1 3.7907 2.3734 -1.8309 45 1 2.5945 2.5322 -3.2254 46 1 1.2410 4.2004 -1.8754 47 1 2.4365 4.0423 -0.4801 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430552170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:32 Heat of formation + Delta-G solvation = 25.683532 kcal Electronic energy + Delta-G solvation = -23756.107054 eV Core-core repulsion = 20361.734609 eV Total energy + Delta-G solvation = -3394.372445 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.73998 -39.08585 -36.77639 -35.27684 -34.11070 -33.22659 -31.94620 -30.94273 -27.93239 -26.02864 -24.98660 -23.34024 -23.06770 -22.36460 -21.14882 -20.39913 -19.70363 -19.35544 -17.68225 -16.96731 -16.30962 -16.10665 -15.49252 -15.16599 -14.79418 -14.69850 -14.35013 -13.92890 -13.87635 -13.74116 -13.23231 -12.89595 -12.63876 -12.52239 -12.24403 -11.93469 -11.83160 -11.64264 -11.55087 -11.40548 -11.18007 -11.00449 -10.92915 -10.77393 -10.60503 -10.51879 -10.21402 -9.73105 -9.44635 -9.02590 -8.83238 -8.47325 -8.46462 -8.22041 -7.97483 -6.06657 -4.16435 2.97568 3.24493 3.33651 3.35054 3.47715 3.77409 3.81013 4.35000 4.46949 4.58323 4.63948 4.69594 4.83701 4.87958 4.96613 5.12828 5.21062 5.22354 5.31248 5.33100 5.36304 5.40997 5.60879 5.70294 5.74050 5.82569 5.87118 5.91929 5.99696 6.06063 6.37399 6.49937 6.61325 6.65506 6.73070 6.75998 6.83417 6.86825 7.14656 7.33139 7.43418 7.47084 7.63410 7.81698 8.35318 8.66188 8.85082 9.20657 9.50533 11.00423 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.018758 B = 0.002886 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.360461 B = 9698.878444 C = 9979.596502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 N -0.502 5.502 4 C 0.040 3.960 5 C 0.144 3.856 6 N -0.755 5.755 7 C 0.699 3.301 8 O -0.603 6.603 9 N -0.721 5.721 10 C 0.182 3.818 11 C 0.023 3.977 12 C -0.499 4.499 13 H 0.059 0.941 14 C 0.073 3.927 15 N -0.874 5.874 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.211 4.211 21 C -0.140 4.140 22 C 0.021 3.979 23 C -0.221 4.221 24 C -0.171 4.171 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.392 0.608 35 H 0.396 0.604 36 H 0.064 0.936 37 H 0.038 0.962 38 H 0.261 0.739 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.176 7.930 -13.194 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 N -0.224 5.224 4 C -0.088 4.088 5 C 0.019 3.981 6 N -0.412 5.412 7 C 0.398 3.602 8 O -0.482 6.482 9 N -0.373 5.373 10 C 0.058 3.942 11 C 0.022 3.978 12 C -0.536 4.536 13 H 0.078 0.922 14 C -0.131 4.131 15 N -0.510 5.510 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.248 4.248 21 C -0.178 4.178 22 C -0.088 4.088 23 C -0.260 4.260 24 C -0.209 4.209 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.225 0.775 35 H 0.230 0.770 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.138 0.862 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.115 0.885 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.089 7.566 -11.808 21.342 hybrid contribution 1.520 -0.759 -1.978 2.608 sum -14.569 6.807 -13.786 21.181 Atomic orbital electron populations 1.21812 0.94638 1.01889 1.02241 1.22230 0.96297 0.88237 1.01572 1.61788 1.11978 1.15729 1.32951 1.22365 0.88103 1.01836 0.96464 1.20997 0.80062 1.01513 0.95509 1.44983 1.07489 1.72515 1.16224 1.16001 0.82983 0.78910 0.82264 1.90876 1.60170 1.54310 1.42830 1.45155 1.04061 1.68942 1.19175 1.20860 0.92756 0.98940 0.81595 1.19060 0.90034 0.91917 0.96757 1.20380 1.34738 0.99244 0.99259 0.92236 1.24990 0.95469 0.97425 0.95252 1.70000 1.43577 1.19933 1.17512 0.86578 0.79178 0.80588 0.81864 1.19779 1.21046 1.20983 1.23017 1.02328 0.92857 1.06643 1.22455 1.01898 1.01291 0.92205 1.22685 0.98907 0.95939 0.91286 1.23595 0.97933 1.06105 0.98338 1.23078 1.03269 0.92172 1.02366 0.91508 0.92975 0.92103 0.94516 0.89742 0.89886 0.93690 0.91870 0.91043 0.77470 0.77026 0.91813 0.94372 0.92936 0.90466 0.91740 0.91810 0.89460 0.86180 0.88177 0.88879 0.88528 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.77 37.16 0.36 -0.75 16 2 C 0.04 0.39 5.53 -3.82 -0.02 0.37 16 3 N -0.50 -4.71 4.72 -226.64 -1.07 -5.78 16 4 C 0.04 0.39 3.69 -3.82 -0.01 0.38 16 5 C 0.14 1.84 5.62 -4.04 -0.02 1.82 16 6 N -0.75 -10.73 5.56 -65.22 -0.36 -11.09 16 7 C 0.70 13.51 8.57 -86.91 -0.74 12.76 16 8 O -0.60 -14.10 16.34 5.29 0.09 -14.01 16 9 N -0.72 -14.16 5.49 -65.22 -0.36 -14.52 16 10 C 0.18 4.19 5.50 -4.04 -0.02 4.17 16 11 C 0.02 0.55 1.49 -155.66 -0.23 0.31 16 12 C -0.50 -12.81 8.62 -34.44 -0.30 -13.11 16 13 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 14 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16 15 N -0.87 -24.29 12.56 55.43 0.70 -23.60 16 16 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.21 -4.43 9.96 -26.70 -0.27 -4.70 16 21 C -0.14 -3.24 9.06 -26.70 -0.24 -3.49 16 22 C 0.02 0.17 5.81 -67.71 -0.39 -0.22 16 23 C -0.22 -1.63 9.52 -26.69 -0.25 -1.89 16 24 C -0.17 -1.28 9.98 -26.69 -0.27 -1.55 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.34 6.54 -51.93 -0.34 0.00 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.32 8.13 -51.93 -0.42 -0.11 16 29 H 0.08 0.83 6.13 -51.93 -0.32 0.51 16 30 H 0.08 0.75 6.22 -51.93 -0.32 0.43 16 31 H 0.04 0.42 7.65 -51.93 -0.40 0.02 16 32 H 0.06 0.87 6.39 -51.93 -0.33 0.54 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.39 4.45 8.49 -40.82 -0.35 4.10 16 35 H 0.40 7.03 8.36 -40.82 -0.34 6.69 16 36 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 39 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.09 2.16 8.11 -51.93 -0.42 1.74 16 43 H 0.12 0.85 6.34 -51.93 -0.33 0.53 16 44 H 0.10 0.77 5.91 -51.93 -0.31 0.46 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.80 7.65 -51.93 -0.40 0.41 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -30.30 377.50 -10.90 -41.20 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -8.04 Total: 10.63 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.51 Total: -4.05 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -1.10 Total: -54.99 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.09 Total: -14.01 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.30 -10.90 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430552170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.883 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds