Wall clock time and date at job start Fri Apr 10 2020 20:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47147 * 2 1 4 4 C 1.52997 * 109.47085 * 239.99858 * 2 1 3 5 5 N 1.46496 * 109.47108 * 185.00425 * 4 2 1 6 6 C 1.34785 * 120.00049 * 180.02562 * 5 4 2 7 7 O 1.21580 * 120.00193 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99730 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99846 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.46993 * 178.27927 * 9 8 6 11 11 C 1.50702 * 115.55263 * 65.14084 * 10 9 8 12 12 H 1.07997 * 119.99798 * 265.40475 * 11 10 9 13 13 C 1.37883 * 120.00193 * 85.40552 * 11 10 9 14 14 N 1.31517 * 119.99803 * 353.55017 * 13 11 10 15 15 Si 1.86792 * 120.00048 * 173.55766 * 13 11 10 16 16 H 1.48506 * 109.47472 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47413 * 119.99469 * 15 13 11 18 18 H 1.48499 * 109.46896 * 239.99820 * 15 13 11 19 19 C 1.52993 * 117.50060 * 279.46440 * 10 9 8 20 20 C 1.53007 * 117.49815 * 210.80524 * 10 9 8 21 21 N 1.46903 * 109.46957 * 120.00251 * 2 1 3 22 22 C 1.46898 * 110.99859 * 58.95162 * 21 2 1 23 23 C 1.46902 * 110.99586 * 294.99901 * 21 2 1 24 24 C 1.52995 * 117.49709 * 248.61943 * 23 21 2 25 25 C 1.52994 * 60.00243 * 252.51199 * 24 23 21 26 26 H 1.09007 * 109.47084 * 59.99757 * 1 2 3 27 27 H 1.09000 * 109.47407 * 300.00264 * 1 2 3 28 28 H 1.09003 * 109.47511 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47677 * 305.00424 * 4 2 1 30 30 H 1.09002 * 109.47125 * 65.00286 * 4 2 1 31 31 H 0.97000 * 120.00667 * 359.97438 * 5 4 2 32 32 H 0.97006 * 120.00534 * 359.97438 * 8 6 5 33 33 H 1.09007 * 109.46653 * 298.27483 * 9 8 6 34 34 H 1.08994 * 109.47252 * 58.27319 * 9 8 6 35 35 H 0.97000 * 119.99783 * 185.06015 * 14 13 11 36 36 H 1.09004 * 117.49853 * 0.02562 * 19 10 9 37 37 H 1.09001 * 117.50394 * 145.02277 * 19 10 9 38 38 H 1.08998 * 117.50033 * 214.98030 * 20 10 9 39 39 H 1.09005 * 117.49399 * 359.97438 * 20 10 9 40 40 H 1.08994 * 109.47493 * 60.00166 * 22 21 2 41 41 H 1.09009 * 109.46850 * 180.02562 * 22 21 2 42 42 H 1.08995 * 109.47433 * 299.99843 * 22 21 2 43 43 H 1.09003 * 115.55356 * 34.33398 * 23 21 2 44 44 H 1.09001 * 117.50374 * 0.02562 * 24 23 21 45 45 H 1.09005 * 117.50280 * 145.02530 * 24 23 21 46 46 H 1.09001 * 117.50321 * 252.50593 * 25 24 23 47 47 H 1.09005 * 117.49940 * 107.49099 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1731 -1.4284 -2.1911 7 8 3.5685 -1.8845 -3.1423 8 7 5.5162 -1.5257 -2.1368 9 6 6.2478 -2.1805 -3.2242 10 6 7.7495 -2.1185 -2.9382 11 6 8.2132 -2.8883 -1.7285 12 1 8.3176 -2.3877 -0.7773 13 6 8.5042 -4.2318 -1.8361 14 7 8.2574 -4.8701 -2.9592 15 14 9.2489 -5.1451 -0.3869 16 1 9.4278 -4.2071 0.7505 17 1 8.3438 -6.2500 0.0200 18 1 10.5675 -5.7043 -0.7789 19 6 8.4780 -0.8140 -3.2674 20 6 8.6952 -2.0533 -4.1392 21 7 2.0196 -0.6926 1.1994 22 6 1.5282 -2.0761 1.2459 23 6 1.6486 0.0391 2.4180 24 6 2.7746 0.6999 3.2156 25 6 2.0863 -0.5538 3.7589 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6053 -1.7198 -1.2952 30 1 1.7517 -0.1583 -2.1370 31 1 3.9825 -0.4623 -0.4319 32 1 5.9986 -1.1621 -1.3777 33 1 5.9345 -3.2220 -3.2972 34 1 6.0354 -1.6705 -4.1637 35 1 8.3930 -5.8292 -3.0118 36 1 7.8874 0.0002 -3.6873 37 1 9.2930 -0.5127 -2.6092 38 1 9.6529 -2.5668 -4.0542 39 1 8.2474 -2.0550 -5.1331 40 1 1.8761 -2.6151 0.3647 41 1 1.9052 -2.5656 2.1440 42 1 0.4384 -2.0742 1.2639 43 1 0.6873 0.5519 2.3843 44 1 3.7907 0.5922 2.8360 45 1 2.5544 1.6478 3.7068 46 1 1.4132 -0.4308 4.6074 47 1 2.6495 -1.4868 3.7368 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430569126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:35 Heat of formation + Delta-G solvation = 26.553338 kcal Electronic energy + Delta-G solvation = -24384.784902 eV Core-core repulsion = 20990.450174 eV Total energy + Delta-G solvation = -3394.334727 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.70752 -38.80455 -36.74748 -35.86514 -33.34112 -33.01718 -31.91605 -30.46194 -27.04244 -26.29926 -25.64450 -24.57487 -22.46957 -21.69220 -21.14810 -20.07368 -19.62029 -19.29975 -17.50761 -17.15710 -16.34494 -15.67939 -15.25338 -15.09986 -14.70338 -14.49766 -14.33988 -13.89670 -13.61339 -13.45707 -13.19047 -12.86522 -12.60338 -12.54110 -12.32712 -11.99450 -11.75274 -11.60190 -11.48612 -11.41543 -10.98769 -10.89513 -10.85340 -10.63895 -10.48412 -10.36582 -10.22050 -9.64860 -9.43418 -8.90543 -8.67325 -8.47353 -8.45076 -8.18403 -7.84834 -6.03126 -4.11098 3.27837 3.31222 3.36720 3.39073 3.55576 3.62786 3.94846 4.39216 4.57971 4.69540 4.76335 4.79874 4.96702 5.02046 5.10748 5.12009 5.25304 5.38242 5.42226 5.44067 5.45725 5.50671 5.53485 5.71022 5.78602 5.87681 5.94990 6.00635 6.03745 6.09971 6.40340 6.53602 6.67063 6.75004 6.79337 6.91226 6.94264 7.00997 7.14182 7.43270 7.51371 7.54639 7.75753 7.86495 8.39828 8.81766 8.90139 9.35278 9.55272 11.04836 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.003846 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.148774 B = 7278.373125 C = 8230.680601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.071 3.929 3 H 0.090 0.910 4 C 0.151 3.849 5 N -0.743 5.743 6 C 0.697 3.303 7 O -0.610 6.610 8 N -0.721 5.721 9 C 0.183 3.817 10 C 0.028 3.972 11 C -0.497 4.497 12 H 0.060 0.940 13 C 0.074 3.926 14 N -0.874 5.874 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.210 4.210 20 C -0.148 4.148 21 N -0.504 5.504 22 C 0.019 3.981 23 C 0.001 3.999 24 C -0.163 4.163 25 C -0.176 4.176 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.400 0.600 32 H 0.395 0.605 33 H 0.068 0.932 34 H 0.033 0.967 35 H 0.260 0.740 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.030 0.970 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.809 10.659 10.497 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.037 4.037 3 H 0.108 0.892 4 C 0.025 3.975 5 N -0.400 5.400 6 C 0.396 3.604 7 O -0.490 6.490 8 N -0.373 5.373 9 C 0.060 3.940 10 C 0.028 3.972 11 C -0.535 4.535 12 H 0.078 0.922 13 C -0.130 4.130 14 N -0.511 5.511 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.248 4.248 20 C -0.186 4.186 21 N -0.228 5.228 22 C -0.129 4.129 23 C -0.107 4.107 24 C -0.201 4.201 25 C -0.213 4.213 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.235 0.765 32 H 0.229 0.771 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.751 10.012 9.446 19.457 hybrid contribution -0.066 -0.330 1.481 1.519 sum -13.816 9.682 10.928 20.101 Atomic orbital electron populations 1.22380 0.96601 1.02782 1.02564 1.21972 0.93288 0.98765 0.89723 0.89208 1.21092 0.80473 1.00208 0.95693 1.44893 1.06594 1.64436 1.24092 1.16065 0.82331 0.79240 0.82715 1.90855 1.68309 1.54946 1.34928 1.45112 1.03989 1.62183 1.26014 1.20809 0.91066 0.96476 0.85695 1.19050 0.88216 0.93855 0.96111 1.20370 1.45443 0.93835 0.93832 0.92203 1.24980 0.94921 0.97662 0.95474 1.69992 1.47370 1.08516 1.25185 0.86589 0.79060 0.79846 0.82795 1.19749 1.21100 1.21013 1.23012 1.04468 0.91851 1.05450 1.22489 1.02128 0.99804 0.94226 1.61956 1.58481 1.02084 1.00233 1.22467 0.97902 0.89186 1.03331 1.22468 0.97386 1.02509 0.88375 1.23071 0.98426 0.96120 1.02506 1.23050 1.03956 0.98673 0.95653 0.91504 0.92154 0.91806 0.92026 0.91646 0.76543 0.77117 0.91353 0.94884 0.92963 0.91667 0.90446 0.89872 0.91685 0.90552 0.91371 0.95190 0.89140 0.87944 0.89022 0.88965 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 8.58 37.16 0.32 -1.13 16 2 C 0.07 0.68 2.51 -67.71 -0.17 0.51 16 3 H 0.09 0.83 8.13 -51.93 -0.42 0.41 16 4 C 0.15 1.91 4.69 -4.05 -0.02 1.89 16 5 N -0.74 -11.07 5.39 -65.23 -0.35 -11.42 16 6 C 0.70 13.83 8.57 -86.91 -0.74 13.09 16 7 O -0.61 -14.50 16.34 5.29 0.09 -14.42 16 8 N -0.72 -14.62 5.48 -65.22 -0.36 -14.98 16 9 C 0.18 4.31 5.50 -4.04 -0.02 4.29 16 10 C 0.03 0.68 1.38 -155.66 -0.21 0.47 16 11 C -0.50 -12.94 8.63 -34.44 -0.30 -13.24 16 12 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 13 C 0.07 1.97 5.39 -17.82 -0.10 1.88 16 14 N -0.87 -24.59 12.91 55.43 0.72 -23.88 16 15 Si 0.89 20.80 29.55 -169.99 -5.02 15.78 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.21 -4.45 9.96 -26.70 -0.27 -4.71 16 20 C -0.15 -3.44 9.42 -26.69 -0.25 -3.69 16 21 N -0.50 -4.96 4.34 -226.91 -0.98 -5.95 16 22 C 0.02 0.19 8.67 60.06 0.52 0.71 16 23 C 0.00 0.01 5.04 -67.71 -0.34 -0.33 16 24 C -0.16 -1.34 10.46 -26.74 -0.28 -1.62 16 25 C -0.18 -1.42 9.72 -26.73 -0.26 -1.68 16 26 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 27 H 0.06 0.43 6.34 -51.93 -0.33 0.10 16 28 H 0.06 0.52 6.39 -51.93 -0.33 0.19 16 29 H 0.06 0.85 6.70 -51.93 -0.35 0.51 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.40 5.32 8.15 -40.82 -0.33 4.98 16 32 H 0.40 7.36 8.38 -40.82 -0.34 7.02 16 33 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 34 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 35 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 39 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.08 0.92 6.44 -51.93 -0.33 0.59 16 41 H 0.07 0.68 6.76 -51.92 -0.35 0.33 16 42 H 0.03 0.27 6.28 -51.93 -0.33 -0.05 16 43 H 0.09 0.71 6.27 -51.93 -0.33 0.38 16 44 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.10 0.89 7.25 -51.93 -0.38 0.52 16 LS Contribution 376.58 15.07 5.68 5.68 Total: -1.00 -30.14 376.58 -10.37 -40.52 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -8.01 Total: 12.24 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -2.12 Total: -3.56 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.98 Total: -56.23 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.09 Total: -14.42 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.14 -10.37 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430569126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.072 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds