Wall clock time and date at job start Fri Apr 10 2020 20:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46987 * 2 1 4 4 C 1.52996 * 109.47028 * 119.99676 * 2 1 3 5 5 N 1.46497 * 109.47267 * 175.00212 * 4 2 1 6 6 C 1.34776 * 120.00194 * 180.02562 * 5 4 2 7 7 O 1.21582 * 120.00274 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00034 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00258 * 180.02562 * 8 6 5 10 10 C 1.52992 * 109.47269 * 184.79147 * 9 8 6 11 11 C 1.50694 * 115.55114 * 294.81128 * 10 9 8 12 12 H 1.08008 * 119.99906 * 95.20873 * 11 10 9 13 13 C 1.37875 * 120.00314 * 274.92789 * 11 10 9 14 14 N 1.31509 * 119.99913 * 355.42420 * 13 11 10 15 15 Si 1.86807 * 120.00040 * 175.41703 * 13 11 10 16 16 H 1.48494 * 109.47052 * 60.00642 * 15 13 11 17 17 H 1.48500 * 109.47055 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47106 * 300.00083 * 15 13 11 19 19 C 1.53003 * 117.49834 * 80.48431 * 10 9 8 20 20 C 1.53006 * 117.49908 * 149.14426 * 10 9 8 21 21 N 1.46901 * 109.47000 * 239.99728 * 2 1 3 22 22 C 1.46899 * 111.00310 * 306.04576 * 21 2 1 23 23 C 1.46898 * 110.99905 * 70.00262 * 21 2 1 24 24 C 1.52995 * 117.49794 * 243.74374 * 23 21 2 25 25 C 1.52997 * 117.50052 * 175.08356 * 23 21 2 26 26 H 1.09006 * 109.47094 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47290 * 299.99737 * 1 2 3 28 28 H 1.08993 * 109.47259 * 60.00579 * 1 2 3 29 29 H 1.09007 * 109.47402 * 54.99921 * 4 2 1 30 30 H 1.09003 * 109.47711 * 295.00311 * 4 2 1 31 31 H 0.97004 * 119.99607 * 0.02562 * 5 4 2 32 32 H 0.96999 * 119.99637 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.47395 * 64.78624 * 9 8 6 34 34 H 1.09007 * 109.47080 * 304.78945 * 9 8 6 35 35 H 0.97001 * 119.99960 * 184.99387 * 14 13 11 36 36 H 1.09003 * 117.50034 * 214.99852 * 19 10 9 37 37 H 1.09002 * 117.49971 * 0.02686 * 19 10 9 38 38 H 1.08996 * 117.49810 * 359.97342 * 20 10 9 39 39 H 1.08995 * 117.50078 * 144.97442 * 20 10 9 40 40 H 1.08996 * 109.47272 * 59.99693 * 22 21 2 41 41 H 1.08998 * 109.47240 * 180.02562 * 22 21 2 42 42 H 1.09004 * 109.46962 * 300.00565 * 22 21 2 43 43 H 1.09004 * 115.55210 * 29.41062 * 23 21 2 44 44 H 1.09002 * 117.49937 * 359.97438 * 24 23 21 45 45 H 1.08998 * 117.50311 * 145.02021 * 24 23 21 46 46 H 1.08995 * 117.50352 * 214.97736 * 25 23 21 47 47 H 1.09009 * 117.49515 * 0.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1730 -1.4290 2.1908 7 8 3.5684 -1.8851 3.1420 8 7 5.5163 -1.5253 2.1371 9 6 6.2477 -2.1809 3.2240 10 6 7.7521 -2.0506 2.9776 11 6 8.2757 -2.7673 1.7598 12 1 8.3917 -2.2342 0.8276 13 6 8.6123 -4.1021 1.8370 14 7 8.5622 -4.7271 2.9930 15 14 9.1394 -5.0229 0.2994 16 1 10.3500 -4.3802 -0.2718 17 1 9.4451 -6.4337 0.6477 18 1 8.0415 -4.9869 -0.6998 19 6 8.4185 -0.7273 3.3596 20 6 8.6652 -1.9806 4.2032 21 7 2.0197 -0.6926 -1.1994 22 6 1.4344 -2.0355 -1.3078 23 6 1.7530 0.0971 -2.4090 24 6 0.8026 -0.5012 -3.4480 25 6 2.3047 -0.4322 -3.7342 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.6054 -1.7198 1.2953 30 1 1.7516 -0.1583 2.1370 31 1 3.9824 -0.4620 0.4320 32 1 5.9986 -1.1610 1.3785 33 1 5.9756 -3.2357 3.2606 34 1 5.9924 -1.7067 4.1717 35 1 8.8676 -5.6452 3.0616 36 1 9.2357 -0.3752 2.7301 37 1 7.7852 0.0502 3.7869 38 1 8.1942 -2.0270 5.1851 39 1 9.6446 -2.4533 4.1289 40 1 0.3491 -1.9550 -1.3693 41 1 1.8140 -2.5262 -2.2040 42 1 1.7059 -2.6221 -0.4301 43 1 1.7299 1.1780 -2.2693 44 1 0.3756 -1.4811 -3.2342 45 1 0.1546 0.1858 -3.9921 46 1 2.6443 0.3002 -4.4665 47 1 2.8653 -1.3668 -3.7086 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430569127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:37 Heat of formation + Delta-G solvation = 28.877896 kcal Electronic energy + Delta-G solvation = -24357.399494 eV Core-core repulsion = 20963.165567 eV Total energy + Delta-G solvation = -3394.233927 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.88121 -38.97379 -36.75058 -35.82088 -33.28673 -32.98009 -31.89672 -30.29314 -27.00674 -26.80688 -25.63061 -24.53327 -22.56978 -21.54978 -21.10523 -20.07847 -19.67393 -19.29943 -17.50458 -17.23379 -16.39633 -15.74775 -15.29230 -15.10799 -14.81665 -14.58699 -14.07502 -13.92925 -13.72004 -13.41870 -13.01632 -12.83727 -12.55808 -12.48531 -12.25571 -12.11560 -11.81551 -11.61554 -11.53704 -11.44872 -11.02236 -10.92757 -10.92374 -10.89914 -10.50736 -10.50108 -10.17836 -9.63305 -9.38779 -8.97499 -8.68851 -8.42280 -8.35037 -8.16176 -7.86450 -6.01807 -4.11137 3.27330 3.30621 3.36291 3.37920 3.45777 3.79076 3.93293 4.39644 4.51245 4.64539 4.67917 4.75087 4.88950 4.96883 5.07511 5.10541 5.26259 5.29761 5.37865 5.42270 5.45678 5.49613 5.58712 5.64227 5.79316 5.79575 5.89852 5.90504 5.99626 6.10904 6.41615 6.55144 6.66992 6.76529 6.77434 6.83724 6.94306 6.99461 7.18018 7.44118 7.49549 7.55907 7.75870 7.86644 8.40501 8.80731 8.90119 9.33724 9.55530 11.05430 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.003765 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.743607 B = 7435.161890 C = 8513.302901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.069 3.931 3 H 0.090 0.910 4 C 0.152 3.848 5 N -0.743 5.743 6 C 0.697 3.303 7 O -0.611 6.611 8 N -0.721 5.721 9 C 0.183 3.817 10 C 0.026 3.974 11 C -0.498 4.498 12 H 0.059 0.941 13 C 0.074 3.926 14 N -0.875 5.875 15 Si 0.890 3.110 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.211 4.211 20 C -0.142 4.142 21 N -0.500 5.500 22 C 0.013 3.987 23 C 0.024 3.976 24 C -0.221 4.221 25 C -0.170 4.170 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.401 0.599 32 H 0.396 0.604 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.261 0.739 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.036 0.964 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.803 10.244 -10.406 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.040 4.040 3 H 0.108 0.892 4 C 0.026 3.974 5 N -0.400 5.400 6 C 0.396 3.604 7 O -0.491 6.491 8 N -0.374 5.374 9 C 0.059 3.941 10 C 0.025 3.975 11 C -0.536 4.536 12 H 0.077 0.923 13 C -0.130 4.130 14 N -0.511 5.511 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.248 4.248 20 C -0.181 4.181 21 N -0.221 5.221 22 C -0.134 4.134 23 C -0.085 4.085 24 C -0.260 4.260 25 C -0.208 4.208 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.235 0.765 32 H 0.230 0.770 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.134 0.866 44 H 0.117 0.883 45 H 0.109 0.891 46 H 0.114 0.886 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.841 9.529 -9.345 19.960 hybrid contribution -0.074 -0.258 -1.644 1.666 sum -14.915 9.272 -10.989 20.717 Atomic orbital electron populations 1.22386 0.96249 1.02813 1.02614 1.22044 0.93532 0.98565 0.89810 0.89236 1.21078 0.80453 1.00200 0.95651 1.44889 1.06609 1.64363 1.24123 1.16071 0.82337 0.79241 0.82717 1.90853 1.68327 1.55016 1.34921 1.45124 1.03971 1.62186 1.26074 1.20812 0.90974 0.96293 0.85975 1.19041 0.88566 0.93911 0.95988 1.20307 1.44628 0.94003 0.94640 0.92319 1.24974 0.94900 0.97369 0.95791 1.69981 1.45468 1.12099 1.23586 0.86700 0.78974 0.78909 0.83626 1.20337 1.21334 1.20185 1.23008 1.04140 0.91735 1.05936 1.22462 1.02080 0.99347 0.94180 1.62000 1.56979 1.02434 1.00676 1.22580 0.97398 0.90189 1.03244 1.22616 1.02641 0.96984 0.86269 1.23557 0.93597 1.03525 1.05286 1.23073 0.95667 1.03668 0.98424 0.91813 0.91615 0.92049 0.92102 0.91608 0.76497 0.77002 0.91893 0.94559 0.92885 0.90492 0.91753 0.91849 0.89572 0.94512 0.91346 0.90585 0.86608 0.88306 0.89123 0.88586 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 8.49 37.16 0.32 -1.07 16 2 C 0.07 0.63 2.44 -67.71 -0.17 0.47 16 3 H 0.09 0.77 7.96 -51.93 -0.41 0.35 16 4 C 0.15 1.89 4.84 -4.05 -0.02 1.87 16 5 N -0.74 -11.01 5.39 -65.22 -0.35 -11.36 16 6 C 0.70 13.77 8.57 -86.91 -0.74 13.02 16 7 O -0.61 -14.42 16.34 5.29 0.09 -14.33 16 8 N -0.72 -14.61 5.48 -65.23 -0.36 -14.97 16 9 C 0.18 4.30 5.50 -4.05 -0.02 4.28 16 10 C 0.03 0.62 1.47 -155.66 -0.23 0.39 16 11 C -0.50 -12.99 8.59 -34.44 -0.30 -13.29 16 12 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 13 C 0.07 1.98 5.43 -17.82 -0.10 1.88 16 14 N -0.88 -24.59 12.65 55.43 0.70 -23.89 16 15 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 19 C -0.21 -4.49 9.96 -26.69 -0.27 -4.76 16 20 C -0.14 -3.33 9.14 -26.69 -0.24 -3.58 16 21 N -0.50 -4.81 4.36 -226.91 -0.99 -5.80 16 22 C 0.01 0.13 7.41 60.06 0.45 0.58 16 23 C 0.02 0.20 5.20 -67.72 -0.35 -0.15 16 24 C -0.22 -1.65 9.51 -26.70 -0.25 -1.90 16 25 C -0.17 -1.40 9.99 -26.70 -0.27 -1.67 16 26 H 0.06 0.51 6.33 -51.93 -0.33 0.18 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.43 7.52 -51.93 -0.39 0.04 16 29 H 0.06 0.83 6.80 -51.92 -0.35 0.48 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.40 5.30 8.15 -40.82 -0.33 4.96 16 32 H 0.40 7.41 8.34 -40.82 -0.34 7.06 16 33 H 0.06 1.69 8.14 -51.93 -0.42 1.26 16 34 H 0.04 0.85 8.09 -51.92 -0.42 0.43 16 35 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 36 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 40 H 0.04 0.31 5.30 -51.93 -0.28 0.04 16 41 H 0.07 0.66 6.63 -51.93 -0.34 0.32 16 42 H 0.08 0.88 6.58 -51.93 -0.34 0.53 16 43 H 0.12 0.86 7.93 -51.93 -0.41 0.44 16 44 H 0.10 0.76 5.90 -51.93 -0.31 0.46 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.10 0.91 7.56 -51.92 -0.39 0.52 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -30.18 374.13 -10.49 -40.68 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -8.00 Total: 12.13 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.20 Total: -3.93 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -1.00 Total: -56.02 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.09 Total: -14.33 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.18 -10.49 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430569127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.553 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds