Wall clock time and date at job start Fri Apr 10 2020 20:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46856 * 110.99895 * 2 1 4 4 C 1.53036 * 109.52342 * 185.83913 * 3 2 1 5 5 C 1.53121 * 109.28016 * 300.82105 * 4 3 2 6 6 C 1.53003 * 109.52130 * 177.56026 * 5 4 3 7 7 N 1.46501 * 109.46570 * 174.99936 * 6 5 4 8 8 C 1.34785 * 119.99451 * 179.97438 * 7 6 5 9 9 O 1.21587 * 119.99995 * 5.05234 * 8 7 6 10 10 N 1.34772 * 119.99400 * 185.04937 * 8 7 6 11 11 C 1.46506 * 119.99712 * 175.18347 * 10 8 7 12 12 C 1.52992 * 109.47372 * 185.07542 * 11 10 8 13 13 C 1.50706 * 115.54976 * 64.84028 * 12 11 10 14 14 H 1.07998 * 120.00397 * 266.80507 * 13 12 11 15 15 C 1.37876 * 119.99463 * 86.80074 * 13 12 11 16 16 N 1.31520 * 119.99552 * 178.76749 * 15 13 12 17 17 Si 1.86804 * 120.00281 * 358.77593 * 15 13 12 18 18 H 1.48494 * 109.47406 * 91.37328 * 17 15 13 19 19 H 1.48503 * 109.46840 * 211.37394 * 17 15 13 20 20 H 1.48494 * 109.46821 * 331.36891 * 17 15 13 21 21 C 1.52998 * 117.50087 * 279.17549 * 12 11 10 22 22 C 1.52996 * 117.50285 * 210.51545 * 12 11 10 23 23 C 1.53117 * 109.15859 * 57.65393 * 5 4 3 24 24 C 1.46842 * 111.00367 * 124.20991 * 2 1 3 25 25 H 1.08997 * 109.47540 * 60.00098 * 1 2 3 26 26 H 1.09007 * 109.47095 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47554 * 299.99947 * 1 2 3 28 28 H 1.09003 * 109.45941 * 65.82317 * 3 2 1 29 29 H 1.09003 * 109.45201 * 305.84840 * 3 2 1 30 30 H 1.09004 * 109.50252 * 180.87719 * 4 3 2 31 31 H 1.09005 * 109.53492 * 60.78463 * 4 3 2 32 32 H 1.08994 * 109.52037 * 297.68616 * 5 4 3 33 33 H 1.08996 * 109.46976 * 55.00164 * 6 5 4 34 34 H 1.09000 * 109.46797 * 294.99572 * 6 5 4 35 35 H 0.96996 * 120.00033 * 359.97438 * 7 6 5 36 36 H 0.96999 * 120.00604 * 354.91650 * 10 8 7 37 37 H 1.09002 * 109.46972 * 305.08249 * 11 10 8 38 38 H 1.09002 * 109.46788 * 65.07570 * 11 10 8 39 39 H 0.97005 * 119.99719 * 180.02562 * 16 15 13 40 40 H 1.09004 * 117.49824 * 359.97438 * 21 12 11 41 41 H 1.08996 * 117.50142 * 145.01958 * 21 12 11 42 42 H 1.09002 * 117.49925 * 214.98215 * 22 12 11 43 43 H 1.09004 * 117.49630 * 359.97036 * 22 12 11 44 44 H 1.09004 * 109.50589 * 62.29094 * 23 5 4 45 45 H 1.09006 * 109.50178 * 182.40428 * 23 5 4 46 46 H 1.09002 * 109.46273 * 294.17586 * 24 2 1 47 47 H 1.08995 * 109.46503 * 54.14575 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3343 -0.1467 5 6 4.1188 0.5371 1.0144 6 6 5.6361 0.4452 0.8405 7 7 6.2226 -0.2132 2.0104 8 6 7.5549 -0.4055 2.0781 9 8 8.2793 0.0481 1.2132 10 7 8.0841 -1.1004 3.1044 11 6 9.5181 -1.4002 3.1239 12 6 9.8349 -2.2993 4.3205 13 6 9.2131 -3.6716 4.2851 14 1 8.2610 -3.8457 4.7643 15 6 9.8596 -4.7049 3.6407 16 7 9.3287 -5.9081 3.6305 17 14 11.4898 -4.3959 2.7823 18 1 12.6045 -4.6572 3.7279 19 1 11.6117 -5.3008 1.6111 20 1 11.5487 -2.9843 2.3253 21 6 9.9888 -1.6286 5.6870 22 6 11.2206 -2.1678 4.9557 23 6 3.5181 -0.8713 1.0208 24 6 1.9952 -0.7707 1.1337 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.7323 1.8609 0.9376 29 1 1.5633 1.9256 -0.8331 30 1 3.9098 2.3514 -0.1311 31 1 3.7818 0.8573 -1.0907 32 1 3.8896 1.0362 1.9559 33 1 6.0518 1.4478 0.7413 34 1 5.8648 -0.1333 -0.0547 35 1 5.6521 -0.5107 2.7363 36 1 7.5164 -1.3987 3.8321 37 1 9.7949 -1.9113 2.2018 38 1 10.0823 -0.4713 3.2079 39 1 9.7838 -6.6352 3.1774 40 1 9.8646 -0.5466 5.7335 41 1 9.6406 -2.1800 6.5604 42 1 11.6823 -3.0738 5.3482 43 1 11.9067 -1.4410 4.5207 44 1 3.7814 -1.3835 0.0953 45 1 3.9099 -1.4302 1.8708 46 1 1.7325 -0.2708 2.0660 47 1 1.5635 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430570567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:40 Heat of formation + Delta-G solvation = -12.318345 kcal Electronic energy + Delta-G solvation = -24071.892548 eV Core-core repulsion = 20675.872218 eV Total energy + Delta-G solvation = -3396.020330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.81946 -39.03044 -37.15060 -35.51443 -33.38525 -32.73508 -32.10536 -31.08943 -28.32099 -26.51424 -25.29842 -24.34831 -23.40115 -21.86531 -21.67310 -20.40221 -19.86375 -19.24513 -17.74197 -16.57990 -16.01339 -15.73775 -15.41846 -15.26361 -14.92442 -14.82384 -14.41845 -14.14380 -13.95793 -13.45341 -13.30060 -13.04003 -12.86922 -12.66764 -12.61320 -12.31813 -12.24270 -11.94602 -11.75024 -11.42032 -11.13794 -10.87088 -10.74113 -10.66148 -10.52916 -10.49708 -10.15887 -9.79133 -9.57353 -9.16743 -8.84527 -8.62417 -8.62123 -8.57646 -8.10140 -6.14358 -4.18629 3.16257 3.30661 3.41006 3.47527 3.64429 3.75921 4.42038 4.48462 4.51355 4.57289 4.70179 4.88180 5.03013 5.04332 5.07438 5.14118 5.15971 5.23505 5.32878 5.40501 5.50533 5.55053 5.57387 5.67447 5.71812 5.76734 5.88390 5.94101 6.01828 6.03890 6.09051 6.23463 6.29844 6.43151 6.51976 6.71048 6.75458 6.79341 6.80231 7.02514 7.10164 7.22995 7.47016 7.69749 8.42412 8.59180 8.85359 9.14277 9.49056 10.96997 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.003067 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.040033 B = 9127.410623 C = 9601.363378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.057 3.943 4 C -0.109 4.109 5 C -0.100 4.100 6 C 0.148 3.852 7 N -0.752 5.752 8 C 0.700 3.300 9 O -0.605 6.605 10 N -0.720 5.720 11 C 0.175 3.825 12 C -0.015 4.015 13 C -0.489 4.489 14 H 0.077 0.923 15 C 0.080 3.920 16 N -0.896 5.896 17 Si 0.878 3.122 18 H -0.278 1.278 19 H -0.293 1.293 20 H -0.256 1.256 21 C -0.179 4.179 22 C -0.193 4.193 23 C -0.114 4.114 24 C 0.055 3.945 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.023 0.977 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.393 0.607 36 H 0.398 0.602 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.265 0.735 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.032 0.968 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 13.551 -3.939 20.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.071 4.071 4 C -0.148 4.148 5 C -0.119 4.119 6 C 0.023 3.977 7 N -0.409 5.409 8 C 0.400 3.600 9 O -0.485 6.485 10 N -0.373 5.373 11 C 0.051 3.949 12 C -0.017 4.017 13 C -0.526 4.526 14 H 0.095 0.905 15 C -0.123 4.123 16 N -0.533 5.533 17 Si 0.706 3.294 18 H -0.205 1.205 19 H -0.220 1.220 20 H -0.180 1.180 21 C -0.216 4.216 22 C -0.230 4.230 23 C -0.152 4.152 24 C -0.072 4.072 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.227 0.773 36 H 0.232 0.768 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.050 0.950 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.344 13.505 -5.257 20.390 hybrid contribution 0.063 0.028 0.988 0.990 sum -14.281 13.533 -4.269 20.132 Atomic orbital electron populations 1.22348 0.87380 1.02120 1.00482 1.61922 1.07453 1.13818 1.43730 1.22082 0.95555 0.89069 1.00377 1.21559 0.93989 1.00219 0.98985 1.21449 0.94160 0.96833 0.99414 1.21114 0.90878 0.97559 0.88157 1.45076 1.06151 1.66213 1.23422 1.16003 0.81803 0.79483 0.82700 1.90866 1.59728 1.56092 1.41772 1.44974 1.10869 1.57804 1.23645 1.20998 0.78348 0.96153 0.99387 1.19635 0.96072 0.96510 0.89444 1.20171 1.07204 0.89316 1.35889 0.90484 1.24961 0.97580 0.94716 0.95054 1.69888 1.39451 1.00809 1.43157 0.86861 0.84140 0.79160 0.79231 1.20456 1.22029 1.17992 1.22837 1.03203 0.97943 0.97646 1.22950 0.91547 1.02223 1.06326 1.21677 0.93712 0.96393 1.03369 1.22117 0.95848 0.98192 0.91077 0.91422 0.91332 0.95831 0.94971 0.90715 0.91102 0.90534 0.90907 0.91942 0.91763 0.77287 0.76801 0.91859 0.94260 0.92518 0.90899 0.89463 0.89168 0.90719 0.90565 0.90986 0.94954 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.59 60.06 0.58 0.75 16 2 N -0.54 -4.83 4.91 -242.96 -1.19 -6.03 16 3 C 0.06 0.45 5.46 -3.83 -0.02 0.43 16 4 C -0.11 -0.91 5.38 -26.65 -0.14 -1.05 16 5 C -0.10 -0.92 2.29 -90.49 -0.21 -1.12 16 6 C 0.15 1.81 5.07 -4.04 -0.02 1.79 16 7 N -0.75 -10.54 5.31 -65.22 -0.35 -10.88 16 8 C 0.70 13.22 8.55 -86.92 -0.74 12.47 16 9 O -0.60 -13.73 16.36 5.29 0.09 -13.65 16 10 N -0.72 -13.70 5.46 -65.22 -0.36 -14.05 16 11 C 0.18 3.78 5.12 -4.04 -0.02 3.76 16 12 C -0.02 -0.34 0.81 -155.66 -0.13 -0.46 16 13 C -0.49 -12.87 9.29 -34.44 -0.32 -13.19 16 14 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 15 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 16 N -0.90 -26.61 13.96 55.43 0.77 -25.84 16 17 Si 0.88 21.62 24.88 -169.99 -4.23 17.39 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.26 -6.08 5.73 56.52 0.32 -5.76 16 21 C -0.18 -3.43 9.96 -26.70 -0.27 -3.69 16 22 C -0.19 -3.97 7.60 -26.70 -0.20 -4.17 16 23 C -0.11 -1.09 5.22 -26.65 -0.14 -1.23 16 24 C 0.06 0.49 5.46 -3.84 -0.02 0.47 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.46 8.09 -51.92 -0.42 0.04 16 27 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.39 4.53 7.71 -40.82 -0.31 4.22 16 36 H 0.40 6.87 8.47 -40.82 -0.35 6.53 16 37 H 0.06 1.53 6.65 -51.93 -0.35 1.19 16 38 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 42 H 0.09 1.94 7.27 -51.93 -0.38 1.57 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.07 0.70 7.27 -51.93 -0.38 0.32 16 46 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 47 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -31.80 368.11 -10.05 -41.85 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -8.58 Total: 8.79 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -1.75 Total: -3.12 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -1.12 Total: -56.80 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.23 Total: 17.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.80 -10.05 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430570567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.529 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds