Wall clock time and date at job start Fri Apr 10 2020 20:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.45947 * 2 1 4 4 C 1.53035 * 109.46275 * 240.02666 * 2 1 3 5 5 C 1.53119 * 109.27803 * 180.80102 * 4 2 1 6 6 H 1.08998 * 109.57187 * 177.59314 * 5 4 2 7 7 N 1.46493 * 109.52696 * 297.75705 * 5 4 2 8 8 C 1.34776 * 120.00070 * 204.68466 * 7 5 4 9 9 O 1.21588 * 120.00060 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99999 * 179.97438 * 8 7 5 11 11 C 1.46496 * 119.99867 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47406 * 174.90430 * 11 10 8 13 13 C 1.50699 * 115.54956 * 304.53989 * 12 11 10 14 14 H 1.08000 * 119.99683 * 95.19572 * 13 12 11 15 15 C 1.37871 * 119.99851 * 275.19633 * 13 12 11 16 16 N 1.31509 * 120.00378 * 5.98999 * 15 13 12 17 17 Si 1.86806 * 119.99757 * 185.98972 * 15 13 12 18 18 H 1.48498 * 109.46977 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47011 * 239.99696 * 17 15 13 20 20 H 1.48500 * 109.46892 * 119.99879 * 17 15 13 21 21 C 1.53009 * 117.49386 * 90.20459 * 12 11 10 22 22 C 1.52999 * 117.50041 * 158.86524 * 12 11 10 23 23 C 1.53124 * 109.15819 * 57.65816 * 5 4 2 24 24 C 1.53034 * 109.27771 * 302.34677 * 23 5 4 25 25 N 1.46848 * 109.52824 * 59.17934 * 24 23 5 26 26 C 1.46893 * 111.00302 * 174.15986 * 25 24 23 27 27 H 1.09001 * 109.47391 * 300.02102 * 1 2 3 28 28 H 1.08993 * 109.47151 * 60.02532 * 1 2 3 29 29 H 1.09006 * 109.47148 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.49898 * 60.86543 * 4 2 1 31 31 H 1.08999 * 109.50319 * 300.74648 * 4 2 1 32 32 H 0.96998 * 119.99914 * 24.67506 * 7 5 4 33 33 H 0.96998 * 119.99984 * 359.97438 * 10 8 7 34 34 H 1.09006 * 109.47658 * 54.90788 * 11 10 8 35 35 H 1.08999 * 109.47335 * 294.91100 * 11 10 8 36 36 H 0.97006 * 119.99983 * 5.34457 * 16 15 13 37 37 H 1.08999 * 117.49450 * 215.00520 * 21 12 11 38 38 H 1.08995 * 117.50134 * 0.02854 * 21 12 11 39 39 H 1.09003 * 117.49728 * 359.97438 * 22 12 11 40 40 H 1.09003 * 117.49927 * 144.97920 * 22 12 11 41 41 H 1.09005 * 109.49852 * 62.28382 * 23 5 4 42 42 H 1.08997 * 109.50457 * 182.35771 * 23 5 4 43 43 H 1.08998 * 109.46170 * 179.19559 * 24 23 5 44 44 H 1.09003 * 109.46259 * 299.17099 * 24 23 5 45 45 H 1.09005 * 109.47038 * 56.04641 * 26 25 24 46 46 H 1.09003 * 109.47168 * 176.04469 * 26 25 24 47 47 H 1.09002 * 109.47324 * 296.04635 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7359 -1.2356 6 1 3.9388 -1.2855 -2.1020 7 7 4.0746 0.6391 -1.2779 8 6 5.3065 0.8909 -1.7632 9 8 6.0001 -0.0232 -2.1653 10 7 5.7696 2.1560 -1.8026 11 6 7.1089 2.4296 -2.3295 12 6 7.3378 3.9415 -2.3806 13 6 6.3136 4.7281 -3.1573 14 1 5.4803 5.1846 -2.6438 15 6 6.4403 4.8649 -4.5233 16 7 7.3857 4.2134 -5.1646 17 14 5.2689 5.9756 -5.4634 18 1 4.3035 6.5906 -4.5174 19 1 4.5313 5.1752 -6.4736 20 1 6.0411 7.0444 -6.1464 21 6 7.9507 4.6053 -1.1457 22 6 8.7852 4.4360 -2.4178 23 6 4.0548 -1.4187 0.0467 24 6 3.4864 -0.6777 1.2591 25 7 2.0192 -0.6918 1.1994 26 6 1.4372 -0.1107 2.4166 27 1 -0.3634 0.5142 0.8898 28 1 -0.3633 0.5134 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.6895 -0.1980 -2.1399 31 1 1.6659 -1.7447 -1.2576 32 1 3.5214 1.3683 -0.9569 33 1 5.2162 2.8852 -1.4821 34 1 7.1960 2.0149 -3.3338 35 1 7.8552 1.9708 -1.6810 36 1 7.9442 3.5778 -4.6902 37 1 7.6130 5.6109 -0.8952 38 1 8.1911 3.9648 -0.2972 39 1 9.5744 3.6842 -2.4054 40 1 8.9967 5.3301 -3.0044 41 1 3.7124 -2.4536 0.0594 42 1 5.1439 -1.3953 0.0828 43 1 3.8174 -1.1699 2.1735 44 1 3.8401 0.3533 1.2532 45 1 1.8277 0.8967 2.5608 46 1 0.3526 -0.0691 2.3166 47 1 1.6995 -0.7285 3.2755 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430846017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:42 Heat of formation + Delta-G solvation = -11.995245 kcal Electronic energy + Delta-G solvation = -24927.813254 eV Core-core repulsion = 21531.806934 eV Total energy + Delta-G solvation = -3396.006319 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.25939 -38.75474 -37.01941 -34.88536 -33.34205 -32.60269 -31.93358 -31.22048 -27.53190 -26.54631 -25.78841 -24.78865 -23.03688 -21.59132 -21.35687 -20.75752 -19.67209 -18.99569 -17.88649 -16.65978 -16.02355 -15.82476 -15.58973 -15.09221 -14.71553 -14.39816 -14.17880 -13.83690 -13.78948 -13.61708 -13.02467 -12.80713 -12.67303 -12.56810 -12.37635 -12.19581 -12.04448 -11.90673 -11.68632 -11.45683 -11.17555 -10.97217 -10.81132 -10.71903 -10.48680 -10.27847 -10.18437 -9.77876 -9.53271 -8.87379 -8.67269 -8.54795 -8.47896 -8.39362 -8.03353 -6.38556 -4.15919 3.20297 3.39410 3.42304 3.54670 3.69555 3.77949 4.45843 4.55475 4.61114 4.74920 4.77917 5.00199 5.06397 5.13881 5.20838 5.23396 5.29495 5.32524 5.38992 5.49108 5.51993 5.62606 5.67102 5.82864 5.84285 5.85594 5.91401 6.05353 6.06818 6.14219 6.16633 6.25019 6.39773 6.53324 6.64484 6.83702 6.85265 6.88678 6.92224 7.17601 7.19988 7.29705 7.52238 8.16610 8.33340 8.63533 8.81233 9.18926 9.60167 10.99414 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.017428 B = 0.003910 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.261533 B = 7158.748452 C = 7734.539729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 H 0.040 0.960 4 C -0.119 4.119 5 C 0.164 3.836 6 H 0.089 0.911 7 N -0.748 5.748 8 C 0.699 3.301 9 O -0.604 6.604 10 N -0.717 5.717 11 C 0.178 3.822 12 C 0.005 3.995 13 C -0.574 4.574 14 H 0.052 0.948 15 C 0.031 3.969 16 N -0.899 5.899 17 Si 1.069 2.931 18 H -0.290 1.290 19 H -0.288 1.288 20 H -0.286 1.286 21 C -0.195 4.195 22 C -0.170 4.170 23 C -0.127 4.127 24 C 0.058 3.942 25 N -0.537 5.537 26 C 0.019 3.981 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.389 0.611 33 H 0.396 0.604 34 H 0.062 0.938 35 H 0.034 0.966 36 H 0.276 0.724 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.035 0.965 45 H 0.024 0.976 46 H 0.073 0.927 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.415 -7.948 12.660 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 H 0.058 0.942 4 C -0.157 4.157 5 C 0.058 3.942 6 H 0.107 0.893 7 N -0.405 5.405 8 C 0.399 3.601 9 O -0.483 6.483 10 N -0.369 5.369 11 C 0.054 3.946 12 C 0.004 3.996 13 C -0.612 4.612 14 H 0.070 0.930 15 C -0.176 4.176 16 N -0.533 5.533 17 Si 0.898 3.102 18 H -0.216 1.216 19 H -0.215 1.215 20 H -0.213 1.213 21 C -0.232 4.232 22 C -0.208 4.208 23 C -0.166 4.166 24 C -0.069 4.069 25 N -0.262 5.262 26 C -0.130 4.130 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.223 0.777 33 H 0.230 0.770 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.053 0.947 45 H 0.042 0.958 46 H 0.092 0.908 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.206 -8.653 10.725 18.409 hybrid contribution 0.177 1.000 1.927 2.178 sum -12.029 -7.653 12.652 19.061 Atomic orbital electron populations 1.21944 0.94203 1.02635 1.01847 1.21612 0.95416 0.95431 0.90477 0.94248 1.21944 0.94370 1.02361 0.97007 1.20736 0.92628 0.82360 0.98495 0.89272 1.45247 1.16679 1.08950 1.69584 1.16036 0.81459 0.83871 0.78701 1.90861 1.58017 1.44328 1.55120 1.44988 1.19242 1.05810 1.66880 1.20835 0.80436 0.96017 0.97336 1.19351 0.93397 0.90374 0.96498 1.21187 1.10302 1.35917 0.93748 0.92983 1.25729 0.98574 0.98282 0.95046 1.70653 1.18607 1.23997 1.40055 0.83548 0.75337 0.75909 0.75410 1.21607 1.21492 1.21264 1.22916 1.07481 1.01417 0.91415 1.22727 0.94867 1.02687 1.00559 1.21990 1.01066 0.99657 0.93899 1.22047 0.86598 0.99378 0.98917 1.61988 1.07497 1.54797 1.01967 1.22458 1.00510 0.97492 0.92496 0.92387 0.91980 0.91669 0.90645 0.89613 0.77662 0.76994 0.91999 0.94802 0.91224 0.90141 0.91465 0.91342 0.89517 0.90526 0.90736 0.90997 0.94664 0.95774 0.90842 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.79 37.16 0.33 -0.84 16 2 C 0.08 0.75 2.28 -67.72 -0.15 0.59 16 3 H 0.04 0.40 6.64 -51.93 -0.34 0.06 16 4 C -0.12 -1.20 5.03 -26.65 -0.13 -1.33 16 5 C 0.16 2.10 2.80 -67.81 -0.19 1.91 16 6 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 7 N -0.75 -10.94 4.35 -58.56 -0.25 -11.20 16 8 C 0.70 13.60 8.53 -86.92 -0.74 12.86 16 9 O -0.60 -13.96 16.00 5.29 0.08 -13.87 16 10 N -0.72 -14.35 5.36 -65.22 -0.35 -14.70 16 11 C 0.18 4.05 5.48 -4.04 -0.02 4.03 16 12 C 0.00 0.11 1.03 -155.66 -0.16 -0.05 16 13 C -0.57 -14.88 8.26 -34.44 -0.28 -15.16 16 14 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 15 C 0.03 0.83 5.39 -17.82 -0.10 0.73 16 16 N -0.90 -26.07 13.46 55.43 0.75 -25.33 16 17 Si 1.07 24.35 29.91 -169.99 -5.08 19.27 16 18 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.20 -4.05 9.93 -26.68 -0.26 -4.31 16 22 C -0.17 -3.82 8.90 -26.69 -0.24 -4.06 16 23 C -0.13 -1.52 5.76 -26.65 -0.15 -1.68 16 24 C 0.06 0.63 5.31 -3.84 -0.02 0.61 16 25 N -0.54 -5.27 4.75 -234.93 -1.12 -6.38 16 26 C 0.02 0.15 9.30 60.06 0.56 0.71 16 27 H 0.06 0.42 6.15 -51.93 -0.32 0.10 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.39 4.98 7.02 -40.82 -0.29 4.69 16 33 H 0.40 7.38 8.17 -40.82 -0.33 7.04 16 34 H 0.06 1.61 7.51 -51.93 -0.39 1.22 16 35 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.28 8.02 6.13 -40.82 -0.25 7.77 16 37 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 40 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 0.73 8.12 -51.93 -0.42 0.30 16 44 H 0.04 0.42 7.69 -51.93 -0.40 0.02 16 45 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 46 H 0.07 0.53 5.75 -51.93 -0.30 0.23 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 366.35 15.07 5.52 5.52 Total: -1.00 -30.45 366.35 -10.16 -40.61 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -8.14 Total: 12.05 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.57 Total: -5.98 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.97 Total: -57.61 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.08 Total: -13.87 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.08 Total: 19.27 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.45 -10.16 -40.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430846017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.617 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds