Wall clock time and date at job start Fri Apr 10 2020 20:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.45827 * 2 1 4 4 C 1.53032 * 109.46187 * 119.97473 * 2 1 3 5 5 C 1.53120 * 109.27911 * 179.18387 * 4 2 1 6 6 H 1.09004 * 109.52218 * 182.37709 * 5 4 2 7 7 N 1.46501 * 109.51829 * 62.25443 * 5 4 2 8 8 C 1.34780 * 119.99876 * 155.00000 * 7 5 4 9 9 O 1.21588 * 119.99987 * 4.99040 * 8 7 5 10 10 N 1.34775 * 120.00316 * 184.98857 * 8 7 5 11 11 C 1.46495 * 120.00237 * 174.79668 * 10 8 7 12 12 C 1.52998 * 109.46989 * 182.63108 * 11 10 8 13 13 C 1.50702 * 115.54857 * 39.81395 * 12 11 10 14 14 H 1.07998 * 119.99624 * 267.59959 * 13 12 11 15 15 C 1.37869 * 120.00243 * 87.60117 * 13 12 11 16 16 N 1.31523 * 120.00006 * 179.00371 * 15 13 12 17 17 Si 1.86801 * 120.00350 * 359.00498 * 15 13 12 18 18 H 1.48508 * 109.46972 * 89.43559 * 17 15 13 19 19 H 1.48497 * 109.47618 * 209.43455 * 17 15 13 20 20 H 1.48500 * 109.46753 * 329.44107 * 17 15 13 21 21 C 1.53001 * 117.50352 * 254.10007 * 12 11 10 22 22 C 1.53002 * 60.00044 * 252.51162 * 21 12 11 23 23 C 1.53115 * 109.16332 * 302.34844 * 5 4 2 24 24 C 1.53038 * 109.27584 * 57.64969 * 23 5 4 25 25 N 1.46842 * 109.52626 * 300.82311 * 24 23 5 26 26 C 1.46907 * 110.99990 * 185.84231 * 25 24 23 27 27 H 1.09001 * 109.47778 * 300.02179 * 1 2 3 28 28 H 1.09005 * 109.47488 * 60.02633 * 1 2 3 29 29 H 1.09002 * 109.47047 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.50324 * 59.24763 * 4 2 1 31 31 H 1.08997 * 109.54128 * 299.15042 * 4 2 1 32 32 H 0.96998 * 120.00000 * 334.99829 * 7 5 4 33 33 H 0.97007 * 119.99584 * 355.06939 * 10 8 7 34 34 H 1.09001 * 109.47169 * 302.63346 * 11 10 8 35 35 H 1.09001 * 109.47144 * 62.63357 * 11 10 8 36 36 H 0.96995 * 119.99622 * 179.97438 * 16 15 13 37 37 H 1.09001 * 117.49378 * 359.97438 * 21 12 11 38 38 H 1.08990 * 117.50291 * 145.02058 * 21 12 11 39 39 H 1.08999 * 117.50183 * 252.50890 * 22 21 12 40 40 H 1.09000 * 117.49967 * 107.48872 * 22 21 12 41 41 H 1.08996 * 109.50559 * 177.59879 * 23 5 4 42 42 H 1.09008 * 109.50124 * 297.71137 * 23 5 4 43 43 H 1.09007 * 109.45944 * 180.80584 * 24 23 5 44 44 H 1.08996 * 109.46004 * 60.84282 * 24 23 5 45 45 H 1.08998 * 109.46450 * 295.78920 * 26 25 24 46 46 H 1.08998 * 109.47371 * 55.78591 * 26 25 24 47 47 H 1.08996 * 109.46791 * 175.78805 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5709 -0.7363 1.2354 6 1 3.9379 -1.2856 2.1025 7 7 4.0747 0.6387 1.2779 8 6 5.3042 0.8910 1.7690 9 8 6.0304 -0.0291 2.0922 10 7 5.7289 2.1632 1.9017 11 6 7.0175 2.4425 2.5401 12 6 7.2285 3.9556 2.6225 13 6 6.0061 4.7641 2.9736 14 1 5.3806 5.1652 2.1899 15 6 5.6864 4.9918 4.2953 16 7 4.6307 5.7139 4.6015 17 14 6.7528 4.2748 5.6511 18 1 7.8322 5.2359 5.9924 19 1 5.9195 4.0190 6.8534 20 1 7.3545 2.9996 5.1854 21 6 8.2371 4.5820 1.6574 22 6 8.5782 4.4534 3.1433 23 6 4.0546 -1.4191 -0.0469 24 6 3.4862 -0.6779 -1.2592 25 7 2.0191 -0.6918 -1.1994 26 6 1.4370 -0.1105 -2.4166 27 1 -0.3635 0.5142 0.8898 28 1 -0.3634 0.5134 -0.8902 29 1 -0.3633 -1.0277 0.0005 30 1 1.6657 -1.7447 1.2576 31 1 1.6896 -0.1988 2.1403 32 1 3.5234 1.3675 0.9526 33 1 5.1794 2.8942 1.5780 34 1 7.0246 2.0194 3.5446 35 1 7.8189 1.9955 1.9518 36 1 4.4056 5.8737 5.5314 37 1 8.7506 3.9159 0.9640 38 1 8.0166 5.5789 1.2761 39 1 8.5822 5.3658 3.7396 40 1 9.3160 3.7029 3.4272 41 1 5.1437 -1.3952 -0.0834 42 1 3.7121 -2.4539 -0.0596 43 1 3.8171 -1.1702 -2.1737 44 1 3.8402 0.3529 -1.2533 45 1 1.7119 0.9421 -2.4837 46 1 1.8160 -0.6414 -3.2899 47 1 0.3515 -0.2010 -2.3792 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430846018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:44 Heat of formation + Delta-G solvation = -3.949904 kcal Electronic energy + Delta-G solvation = -25014.291228 eV Core-core repulsion = 21618.633781 eV Total energy + Delta-G solvation = -3395.657447 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.21414 -38.73263 -37.08443 -34.84483 -33.33228 -32.53841 -32.18051 -31.19306 -27.50369 -26.59343 -26.08783 -25.08136 -22.98534 -21.73075 -21.48332 -20.75004 -19.40979 -18.87953 -17.68635 -16.52058 -15.96215 -15.71123 -15.52984 -15.20813 -14.85399 -14.56235 -14.19381 -14.12810 -13.76461 -13.45471 -12.96813 -12.84508 -12.62921 -12.53825 -12.34761 -12.27907 -12.10139 -12.00079 -11.84155 -11.41370 -11.18308 -11.11877 -10.74764 -10.64006 -10.50718 -10.24443 -10.17952 -9.75272 -9.55782 -9.16749 -8.83081 -8.66953 -8.61185 -8.42434 -7.99910 -6.20672 -4.25747 3.22962 3.27807 3.37172 3.43434 3.75098 3.79649 4.37499 4.61285 4.66783 4.73052 4.84079 4.98689 5.06318 5.11161 5.16077 5.26311 5.29839 5.36265 5.44553 5.55458 5.59726 5.67819 5.72371 5.73398 5.87674 5.89730 5.97566 6.00127 6.08424 6.08802 6.12613 6.21135 6.33402 6.44882 6.53309 6.71413 6.88032 6.93869 6.94360 6.97776 7.07496 7.31032 7.54318 7.66723 8.36439 8.68578 8.78459 9.21266 9.43343 10.90071 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.004017 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.570260 B = 6969.014510 C = 7349.838612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.079 3.921 3 H 0.041 0.959 4 C -0.119 4.119 5 C 0.165 3.835 6 H 0.087 0.913 7 N -0.747 5.747 8 C 0.700 3.300 9 O -0.608 6.608 10 N -0.716 5.716 11 C 0.173 3.827 12 C -0.016 4.016 13 C -0.491 4.491 14 H 0.077 0.923 15 C 0.084 3.916 16 N -0.894 5.894 17 Si 0.879 3.121 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.256 1.256 21 C -0.179 4.179 22 C -0.196 4.196 23 C -0.127 4.127 24 C 0.058 3.942 25 N -0.538 5.538 26 C 0.021 3.979 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.392 0.608 33 H 0.404 0.596 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.265 0.735 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.036 0.964 45 H 0.024 0.976 46 H 0.065 0.935 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 -11.196 -10.693 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 H 0.059 0.941 4 C -0.157 4.157 5 C 0.059 3.941 6 H 0.105 0.895 7 N -0.404 5.404 8 C 0.400 3.600 9 O -0.489 6.489 10 N -0.370 5.370 11 C 0.049 3.951 12 C -0.017 4.017 13 C -0.529 4.529 14 H 0.095 0.905 15 C -0.120 4.120 16 N -0.531 5.531 17 Si 0.707 3.293 18 H -0.204 1.204 19 H -0.222 1.222 20 H -0.180 1.180 21 C -0.216 4.216 22 C -0.233 4.233 23 C -0.166 4.166 24 C -0.070 4.070 25 N -0.263 5.263 26 C -0.127 4.127 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.226 0.774 33 H 0.240 0.760 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.054 0.946 45 H 0.043 0.957 46 H 0.084 0.916 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.893 -12.422 -10.168 17.100 hybrid contribution 0.304 1.373 0.496 1.492 sum -5.589 -11.049 -9.671 15.711 Atomic orbital electron populations 1.21921 0.94186 1.02523 1.01924 1.21616 0.95459 0.95497 0.90357 0.94079 1.21948 0.94360 1.02307 0.97122 1.20731 0.92646 0.82321 0.98422 0.89457 1.45245 1.16908 1.09029 1.69212 1.16039 0.81623 0.83894 0.78482 1.90844 1.55639 1.44177 1.58210 1.45064 1.23138 1.05478 1.63347 1.20871 0.82722 0.95412 0.96130 1.19632 0.90589 0.91245 1.00240 1.20115 1.07424 1.32262 0.93054 0.90457 1.24946 0.94656 0.93734 0.98661 1.69886 1.26160 1.38185 1.18837 0.86872 0.80368 0.80873 0.81151 1.20397 1.22193 1.18015 1.22890 1.05196 1.01928 0.91574 1.22940 1.00277 1.02813 0.97300 1.21987 1.01115 0.99567 0.93903 1.22050 0.86661 0.99416 0.98873 1.61995 1.07468 1.54833 1.01997 1.22416 1.00588 0.97318 0.92401 0.91952 0.92455 0.91761 0.89678 0.90594 0.77413 0.75965 0.92403 0.93893 0.92476 0.90865 0.89527 0.89225 0.90732 0.90641 0.90630 0.91034 0.94617 0.95710 0.91633 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.77 37.16 0.33 -0.94 16 2 C 0.08 0.80 2.28 -67.73 -0.15 0.64 16 3 H 0.04 0.45 6.64 -51.93 -0.34 0.11 16 4 C -0.12 -1.26 5.04 -26.65 -0.13 -1.39 16 5 C 0.16 2.15 2.77 -67.81 -0.19 1.96 16 6 H 0.09 1.29 7.65 -51.93 -0.40 0.90 16 7 N -0.75 -11.17 4.35 -58.55 -0.25 -11.42 16 8 C 0.70 13.43 8.52 -86.92 -0.74 12.69 16 9 O -0.61 -13.56 16.06 5.29 0.08 -13.48 16 10 N -0.72 -14.21 5.32 -65.23 -0.35 -14.56 16 11 C 0.17 3.71 5.59 -4.05 -0.02 3.69 16 12 C -0.02 -0.35 1.18 -155.66 -0.18 -0.53 16 13 C -0.49 -12.60 8.06 -34.44 -0.28 -12.88 16 14 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 15 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 16 N -0.89 -25.85 13.96 55.43 0.77 -25.08 16 17 Si 0.88 21.39 25.02 -169.99 -4.25 17.13 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.26 -6.06 5.43 56.52 0.31 -5.75 16 21 C -0.18 -3.48 9.88 -26.73 -0.26 -3.74 16 22 C -0.20 -4.04 7.61 -26.73 -0.20 -4.24 16 23 C -0.13 -1.53 5.76 -26.65 -0.15 -1.68 16 24 C 0.06 0.64 5.32 -3.84 -0.02 0.62 16 25 N -0.54 -5.48 4.75 -234.93 -1.11 -6.59 16 26 C 0.02 0.18 9.05 60.07 0.54 0.73 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.46 6.32 -51.93 -0.33 0.13 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.39 5.30 7.03 -40.82 -0.29 5.01 16 33 H 0.40 7.81 7.51 -40.82 -0.31 7.50 16 34 H 0.06 1.36 6.38 -51.93 -0.33 1.02 16 35 H 0.04 0.88 7.95 -51.93 -0.41 0.47 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 38 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 39 H 0.09 1.94 7.18 -51.93 -0.37 1.56 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 42 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 43 H 0.07 0.73 8.09 -51.92 -0.42 0.31 16 44 H 0.04 0.44 7.69 -51.93 -0.40 0.04 16 45 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 47 H 0.07 0.56 6.21 -51.93 -0.32 0.23 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -29.88 358.83 -9.49 -39.37 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -8.22 Total: 12.13 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -1.57 Total: -2.91 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.94 Total: -57.65 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.08 Total: -13.48 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.25 Total: 17.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.88 -9.49 -39.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430846018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.423 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds