Wall clock time and date at job start Fri Apr 10 2020 20:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.45893 * 2 1 4 4 C 1.53037 * 109.46094 * 119.97471 * 2 1 3 5 5 C 1.53119 * 109.27774 * 179.19190 * 4 2 1 6 6 H 1.08997 * 109.52099 * 62.30909 * 5 4 2 7 7 N 1.46498 * 109.52645 * 182.44174 * 5 4 2 8 8 C 1.34779 * 120.00066 * 205.00243 * 7 5 4 9 9 O 1.21581 * 119.99966 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99769 * 180.02562 * 8 7 5 11 11 C 1.46496 * 119.99824 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47256 * 181.14260 * 11 10 8 13 13 C 1.50699 * 115.55045 * 39.67646 * 12 11 10 14 14 H 1.08003 * 119.99877 * 264.54004 * 13 12 11 15 15 C 1.37875 * 120.00201 * 84.53430 * 13 12 11 16 16 N 1.31519 * 119.99985 * 352.92533 * 15 13 12 17 17 Si 1.86794 * 120.00061 * 172.92605 * 15 13 12 18 18 H 1.48499 * 109.47269 * 90.00121 * 17 15 13 19 19 H 1.48506 * 109.47250 * 209.99883 * 17 15 13 20 20 H 1.48495 * 109.47443 * 330.00261 * 17 15 13 21 21 C 1.52996 * 117.49414 * 253.97272 * 12 11 10 22 22 C 1.52994 * 117.50107 * 185.34830 * 12 11 10 23 23 C 1.53129 * 109.16106 * 302.34823 * 5 4 2 24 24 C 1.53031 * 109.27738 * 57.65043 * 23 5 4 25 25 N 1.46842 * 109.52549 * 300.82224 * 24 23 5 26 26 C 1.46905 * 111.00210 * 185.83996 * 25 24 23 27 27 H 1.09002 * 109.47439 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47212 * 299.97206 * 1 2 3 29 29 H 1.08998 * 109.47227 * 59.96773 * 1 2 3 30 30 H 1.08995 * 109.50644 * 299.13448 * 4 2 1 31 31 H 1.09005 * 109.50398 * 59.21582 * 4 2 1 32 32 H 0.96996 * 119.99768 * 24.99992 * 7 5 4 33 33 H 0.96996 * 120.00065 * 359.97438 * 10 8 7 34 34 H 1.09004 * 109.47149 * 301.13858 * 11 10 8 35 35 H 1.08996 * 109.47523 * 61.13942 * 11 10 8 36 36 H 0.96993 * 120.00022 * 185.03588 * 16 15 13 37 37 H 1.09001 * 117.50255 * 359.97438 * 21 12 11 38 38 H 1.09004 * 117.50005 * 145.02283 * 21 12 11 39 39 H 1.08994 * 117.50192 * 214.97825 * 22 12 11 40 40 H 1.09003 * 117.49730 * 359.97438 * 22 12 11 41 41 H 1.09000 * 109.49706 * 297.70888 * 23 5 4 42 42 H 1.08998 * 109.49998 * 177.59205 * 23 5 4 43 43 H 1.09001 * 109.46087 * 180.80621 * 24 23 5 44 44 H 1.09001 * 109.46407 * 60.84146 * 24 23 5 45 45 H 1.09002 * 109.46941 * 56.04617 * 26 25 24 46 46 H 1.08996 * 109.47594 * 176.04626 * 26 25 24 47 47 H 1.09000 * 109.46947 * 296.04858 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5709 -0.7362 1.2356 6 1 3.9456 0.2869 1.2682 7 7 4.0642 -1.4757 2.4000 8 6 5.2937 -1.2201 2.8894 9 8 5.9936 -0.3760 2.3642 10 7 5.7476 -1.9009 3.9603 11 6 7.0838 -1.6226 4.4926 12 6 7.3616 -2.5452 5.6812 13 6 6.8720 -3.9626 5.5322 14 1 5.9127 -4.2480 5.9381 15 6 7.6487 -4.8950 4.8777 16 7 8.7492 -4.5194 4.2634 17 14 7.1378 -6.6917 4.8635 18 1 6.2725 -6.9510 3.6848 19 1 8.3474 -7.5498 4.7879 20 1 6.3871 -7.0027 6.1064 21 6 7.3210 -1.9266 7.0800 22 6 8.6611 -2.3246 6.4580 23 6 4.0547 -1.4189 -0.0469 24 6 3.4864 -0.6778 -1.2591 25 7 2.0192 -0.6918 -1.1994 26 6 1.4371 -0.1105 -2.4165 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5134 0.8902 29 1 -0.3633 0.5143 -0.8897 30 1 1.6895 -0.1982 2.1399 31 1 1.6653 -1.7445 1.2579 32 1 3.5059 -2.1494 2.8187 33 1 5.1894 -2.5746 4.3790 34 1 7.8281 -1.7972 3.7155 35 1 7.1359 -0.5840 4.8189 36 1 9.2566 -5.1609 3.7420 37 1 7.0969 -0.8624 7.1534 38 1 6.9401 -2.5449 7.8929 39 1 9.1617 -3.2046 6.8617 40 1 9.3184 -1.5226 6.1221 41 1 3.7124 -2.4537 -0.0595 42 1 5.1438 -1.3948 -0.0833 43 1 3.8173 -1.1700 -2.1736 44 1 3.8403 0.3532 -1.2533 45 1 1.8127 -0.6443 -3.2895 46 1 0.3513 -0.1970 -2.3772 47 1 1.7156 0.9410 -2.4861 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430846019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:47 Heat of formation + Delta-G solvation = -10.729174 kcal Electronic energy + Delta-G solvation = -24495.787503 eV Core-core repulsion = 21099.836084 eV Total energy + Delta-G solvation = -3395.951418 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.93822 -38.74837 -36.73790 -34.90549 -33.14584 -32.56928 -32.00495 -31.25191 -27.44324 -26.48824 -25.72902 -24.94878 -22.94208 -21.51642 -21.11774 -20.15125 -19.75727 -19.34316 -17.49439 -16.44925 -15.89974 -15.67144 -15.36581 -14.86010 -14.72910 -14.61130 -14.17073 -14.09655 -13.73904 -13.36174 -13.06161 -12.75936 -12.59431 -12.33653 -12.22061 -12.07086 -11.96066 -11.76828 -11.58714 -11.16289 -11.05507 -11.02150 -10.94284 -10.75112 -10.52939 -10.44362 -10.21903 -9.67941 -9.41682 -8.92698 -8.71402 -8.50433 -8.48668 -8.25793 -7.78265 -6.08977 -4.18209 3.23675 3.32184 3.32676 3.34689 3.71010 3.92796 4.33319 4.60503 4.69752 4.80605 4.96821 5.03554 5.13174 5.20270 5.24139 5.27494 5.35079 5.38995 5.42233 5.48504 5.55987 5.63122 5.68291 5.74054 5.89721 5.94865 6.03086 6.07916 6.20339 6.34703 6.38304 6.52453 6.61453 6.74711 6.88852 6.94040 6.94942 6.96867 7.11484 7.37448 7.43538 7.52463 7.73404 7.79360 8.34751 8.81483 8.86193 9.36170 9.48929 10.98661 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.003449 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.476853 B = 8116.388887 C = 8672.028554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.085 3.915 3 H 0.042 0.958 4 C -0.118 4.118 5 C 0.167 3.833 6 H 0.081 0.919 7 N -0.750 5.750 8 C 0.698 3.302 9 O -0.610 6.610 10 N -0.713 5.713 11 C 0.184 3.816 12 C 0.029 3.971 13 C -0.504 4.504 14 H 0.060 0.940 15 C 0.078 3.922 16 N -0.869 5.869 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.211 4.211 22 C -0.152 4.152 23 C -0.129 4.129 24 C 0.060 3.940 25 N -0.539 5.539 26 C 0.021 3.979 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.393 0.607 33 H 0.400 0.600 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.035 0.965 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.980 7.117 -8.667 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 H 0.060 0.940 4 C -0.157 4.157 5 C 0.061 3.939 6 H 0.099 0.901 7 N -0.405 5.405 8 C 0.398 3.602 9 O -0.490 6.490 10 N -0.366 5.366 11 C 0.060 3.940 12 C 0.029 3.971 13 C -0.542 4.542 14 H 0.078 0.922 15 C -0.127 4.127 16 N -0.504 5.504 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.248 4.248 22 C -0.190 4.190 23 C -0.168 4.168 24 C -0.069 4.069 25 N -0.265 5.265 26 C -0.127 4.127 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.227 0.773 33 H 0.235 0.765 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.233 7.322 -9.133 18.428 hybrid contribution -0.296 -0.879 0.200 0.948 sum -14.529 6.443 -8.933 18.232 Atomic orbital electron populations 1.21915 0.94130 1.02696 1.01733 1.21546 0.95386 0.95454 0.90018 0.93987 1.21917 0.94635 1.02095 0.97038 1.20676 0.92478 0.96282 0.84436 0.90083 1.45134 1.17152 1.44394 1.33817 1.16063 0.81323 0.81973 0.80881 1.90839 1.57465 1.37753 1.62940 1.45117 1.19250 1.41478 1.30733 1.20683 0.81746 0.95179 0.96397 1.19035 0.97533 0.94245 0.86328 1.20272 1.04077 0.91532 1.38295 0.92206 1.24977 0.94423 0.98456 0.94881 1.69980 1.15478 1.34843 1.30125 0.86664 0.78120 0.85223 0.78436 1.20658 1.21173 1.19800 1.23083 1.03717 0.98321 0.99714 1.22494 0.90375 1.00907 1.05273 1.22030 1.01267 1.00214 0.93285 1.22061 0.86518 0.99160 0.99125 1.61985 1.07574 1.54905 1.02017 1.22416 1.00583 0.97183 0.92482 0.91625 0.92080 0.92435 0.90885 0.90463 0.77340 0.76460 0.91788 0.94960 0.92855 0.91617 0.90458 0.89950 0.91683 0.90980 0.90557 0.90557 0.94722 0.91497 0.90997 0.95824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.76 37.16 0.33 -0.80 16 2 C 0.08 0.82 2.44 -67.72 -0.17 0.65 16 3 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.12 -1.23 4.85 -26.65 -0.13 -1.36 16 5 C 0.17 2.27 2.52 -67.80 -0.17 2.10 16 6 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 7 N -0.75 -11.48 5.09 -58.55 -0.30 -11.77 16 8 C 0.70 14.03 8.54 -86.91 -0.74 13.28 16 9 O -0.61 -14.42 16.00 5.29 0.08 -14.34 16 10 N -0.71 -14.76 5.33 -65.23 -0.35 -15.11 16 11 C 0.18 4.27 5.75 -4.04 -0.02 4.25 16 12 C 0.03 0.69 1.70 -155.66 -0.27 0.43 16 13 C -0.50 -12.73 7.44 -34.44 -0.26 -12.98 16 14 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 15 C 0.08 2.03 5.39 -17.82 -0.10 1.93 16 16 N -0.87 -23.98 12.97 55.43 0.72 -23.26 16 17 Si 0.89 20.23 29.55 -169.99 -5.02 15.20 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 C -0.21 -4.45 9.88 -26.73 -0.26 -4.72 16 22 C -0.15 -3.50 9.51 -26.73 -0.25 -3.75 16 23 C -0.13 -1.73 5.67 -26.65 -0.15 -1.89 16 24 C 0.06 0.67 5.46 -3.84 -0.02 0.65 16 25 N -0.54 -5.53 4.75 -234.94 -1.12 -6.65 16 26 C 0.02 0.18 9.06 60.07 0.54 0.72 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.40 6.32 -51.93 -0.33 0.07 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.39 5.09 8.62 -40.82 -0.35 4.74 16 33 H 0.40 7.79 7.47 -40.82 -0.30 7.48 16 34 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 35 H 0.03 0.73 7.94 -51.93 -0.41 0.32 16 36 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 37 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 38 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 39 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 40 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 44 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 46 H 0.07 0.51 6.20 -51.93 -0.32 0.19 16 47 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -29.69 372.37 -10.45 -40.14 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -8.41 Total: 11.66 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.67 Total: -1.49 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -1.04 Total: -56.79 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.08 Total: -14.34 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.69 -10.45 -40.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430846019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.409 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds