Wall clock time and date at job start Fri Apr 10 2020 20:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.44905 * 2 1 4 4 C 1.53036 * 109.45982 * 240.03556 * 2 1 3 5 5 H 1.08996 * 109.50179 * 300.78035 * 4 2 1 6 6 N 1.46496 * 109.50499 * 60.85855 * 4 2 1 7 7 C 1.34784 * 119.99916 * 204.64465 * 6 4 2 8 8 O 1.21583 * 119.99766 * 0.27812 * 7 6 4 9 9 N 1.34779 * 119.99903 * 180.27805 * 7 6 4 10 10 C 1.46494 * 119.99772 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47189 * 178.28145 * 10 9 7 12 12 C 1.50703 * 115.55168 * 65.13602 * 11 10 9 13 13 H 1.07999 * 120.00337 * 265.41443 * 12 11 10 14 14 C 1.37881 * 119.99620 * 85.40713 * 12 11 10 15 15 N 1.31511 * 119.99900 * 353.55797 * 14 12 11 16 16 Si 1.86798 * 119.99575 * 173.55445 * 14 12 11 17 17 H 1.48500 * 109.47601 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46853 * 120.00330 * 16 14 12 19 19 H 1.48500 * 109.47084 * 239.99882 * 16 14 12 20 20 C 1.53002 * 117.49714 * 279.47193 * 11 10 9 21 21 C 1.53001 * 117.49924 * 210.80940 * 11 10 9 22 22 C 1.53116 * 109.30989 * 180.82271 * 4 2 1 23 23 C 1.53122 * 109.16257 * 57.63129 * 22 4 2 24 24 C 1.53042 * 109.27676 * 302.34721 * 23 22 4 25 25 N 1.46841 * 109.49810 * 119.95992 * 2 1 3 26 26 C 1.46908 * 110.99630 * 305.83439 * 25 2 1 27 27 H 1.09004 * 109.47057 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46715 * 299.96708 * 1 2 3 29 29 H 1.08994 * 109.47408 * 59.96691 * 1 2 3 30 30 H 0.96999 * 120.00178 * 24.92701 * 6 4 2 31 31 H 0.97004 * 119.99604 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.46891 * 298.27688 * 10 9 7 33 33 H 1.08998 * 109.47144 * 58.28063 * 10 9 7 34 34 H 0.97000 * 119.99451 * 185.05783 * 15 14 12 35 35 H 1.08998 * 117.49603 * 359.97438 * 20 11 10 36 36 H 1.08997 * 117.50099 * 145.01991 * 20 11 10 37 37 H 1.08997 * 117.49909 * 214.97515 * 21 11 10 38 38 H 1.08995 * 117.49869 * 359.97438 * 21 11 10 39 39 H 1.08997 * 109.52307 * 177.53906 * 22 4 2 40 40 H 1.09007 * 109.52021 * 297.72769 * 22 4 2 41 41 H 1.08993 * 109.50039 * 62.28766 * 23 22 4 42 42 H 1.09000 * 109.50329 * 182.40675 * 23 22 4 43 43 H 1.08998 * 109.46291 * 179.19615 * 24 23 22 44 44 H 1.09003 * 109.45864 * 299.16441 * 24 23 22 45 45 H 1.08994 * 109.47237 * 299.70561 * 26 25 2 46 46 H 1.08994 * 109.46761 * 59.70512 * 26 25 2 47 47 H 1.09001 * 109.47116 * 179.70384 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2501 5 1 1.6654 -1.7443 -1.2582 6 7 1.5688 -0.0180 -2.4461 7 6 1.4471 -0.6812 -3.6132 8 8 1.7234 -1.8638 -3.6721 9 7 1.0190 -0.0334 -4.7149 10 6 0.8862 -0.7544 -5.9832 11 6 0.3458 0.1944 -7.0550 12 6 1.2533 1.3383 -7.4279 13 1 1.1369 2.2987 -6.9479 14 6 2.2324 1.1586 -8.3820 15 7 2.4585 -0.0397 -8.8745 16 14 3.2375 2.6172 -8.9749 17 1 2.7913 3.8455 -8.2696 18 1 4.6747 2.3770 -8.6886 19 1 3.0460 2.7885 -10.4375 20 6 -1.1620 0.4540 -7.0734 21 6 -0.5203 -0.4101 -8.1620 22 6 3.5709 -0.7367 -1.2363 23 6 4.0549 -1.4195 0.0460 24 6 3.4874 -0.6779 1.2584 25 7 2.0202 -0.6913 1.1992 26 6 1.4389 -0.1096 2.4166 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5134 0.8903 29 1 -0.3634 0.5143 -0.8896 30 1 1.3484 0.9254 -2.3991 31 1 0.7982 0.9100 -4.6677 32 1 1.8615 -1.1317 -6.2904 33 1 0.1971 -1.5892 -5.8561 34 1 3.1947 -0.1798 -9.4904 35 1 -1.7689 -0.0515 -6.3222 36 1 -1.4975 1.4519 -7.3557 37 1 -0.4340 0.0197 -9.1599 38 1 -0.7047 -1.4838 -8.1269 39 1 3.9372 -1.2872 -2.1027 40 1 3.9461 0.2863 -1.2682 41 1 3.7120 -2.4541 0.0589 42 1 5.1440 -1.3960 0.0820 43 1 3.8185 -1.1701 2.1729 44 1 3.8418 0.3528 1.2522 45 1 1.7179 0.9418 2.4859 46 1 0.3531 -0.1955 2.3776 47 1 1.8146 -0.6435 3.2895 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430878698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:51 Heat of formation + Delta-G solvation = -8.605096 kcal Electronic energy + Delta-G solvation = -24679.455172 eV Core-core repulsion = 21283.595860 eV Total energy + Delta-G solvation = -3395.859312 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11308 -38.72258 -36.72434 -34.64630 -33.45615 -33.12282 -31.96116 -30.77047 -27.37764 -26.53427 -25.97443 -25.01655 -22.69986 -21.55471 -21.17692 -20.22146 -19.88656 -19.34633 -17.67372 -16.57312 -15.94565 -15.57194 -15.21513 -14.95218 -14.64546 -14.64040 -14.17622 -14.14458 -13.76275 -13.53563 -13.13982 -12.84772 -12.60159 -12.42678 -12.29428 -12.04097 -11.90989 -11.74868 -11.56474 -11.18994 -11.01972 -10.96098 -10.90561 -10.78231 -10.51883 -10.35495 -10.25481 -9.68697 -9.47274 -8.94469 -8.77106 -8.54528 -8.48782 -8.23122 -7.93373 -6.06739 -4.15135 3.11976 3.24907 3.33973 3.35696 3.77336 3.87246 4.35669 4.55151 4.70044 4.77469 4.89327 4.93711 5.08913 5.20480 5.21608 5.23739 5.24928 5.38052 5.46016 5.51210 5.57318 5.66582 5.67868 5.76145 5.87738 6.00142 6.05592 6.09020 6.25998 6.34592 6.36707 6.49761 6.62840 6.71383 6.73691 6.84201 6.88960 6.97908 7.10959 7.37447 7.44463 7.50002 7.64384 7.82538 8.35740 8.71509 8.85805 9.26863 9.51457 11.01128 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.003506 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.169313 B = 7984.455779 C = 8515.331378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.077 3.923 3 H 0.043 0.957 4 C 0.177 3.823 5 H 0.095 0.905 6 N -0.749 5.749 7 C 0.700 3.300 8 O -0.601 6.601 9 N -0.721 5.721 10 C 0.183 3.817 11 C 0.028 3.972 12 C -0.499 4.499 13 H 0.059 0.941 14 C 0.074 3.926 15 N -0.873 5.873 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.211 4.211 21 C -0.148 4.148 22 C -0.135 4.135 23 C -0.114 4.114 24 C 0.055 3.945 25 N -0.536 5.536 26 C 0.023 3.977 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.391 0.609 31 H 0.395 0.605 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.261 0.739 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.032 0.968 45 H 0.023 0.977 46 H 0.074 0.926 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 1.746 19.637 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 H 0.061 0.939 4 C 0.070 3.930 5 H 0.113 0.887 6 N -0.405 5.405 7 C 0.400 3.600 8 O -0.480 6.480 9 N -0.373 5.373 10 C 0.059 3.941 11 C 0.028 3.972 12 C -0.537 4.537 13 H 0.078 0.922 14 C -0.130 4.130 15 N -0.509 5.509 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.248 4.248 21 C -0.186 4.186 22 C -0.174 4.174 23 C -0.153 4.153 24 C -0.073 4.073 25 N -0.261 5.261 26 C -0.125 4.125 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.224 0.776 31 H 0.228 0.772 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.051 0.949 45 H 0.042 0.958 46 H 0.092 0.908 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.952 0.052 19.315 19.338 hybrid contribution 0.773 2.521 -0.359 2.661 sum -0.179 2.574 18.956 19.131 Atomic orbital electron populations 1.21919 0.93742 1.03050 1.01760 1.21805 0.95956 0.95376 0.90059 0.93913 1.20609 0.93036 0.97387 0.81940 0.88709 1.45102 1.73646 1.13032 1.08703 1.16002 0.78551 0.85180 0.80268 1.90870 1.57849 1.14440 1.84887 1.45144 1.69961 1.13568 1.08644 1.20829 1.00713 0.92350 0.80185 1.19047 0.87385 0.96515 0.94298 1.20366 1.16278 0.95461 1.21573 0.92239 1.24984 0.96958 0.95551 0.95547 1.69986 1.29083 1.20652 1.31214 0.86590 0.79943 0.83014 0.78742 1.19782 1.21083 1.20959 1.23017 0.98749 1.00154 1.02878 1.22490 1.05010 0.96094 0.95014 1.22045 0.95993 1.00894 0.98448 1.21548 0.99838 1.00486 0.93403 1.22148 0.86981 0.98952 0.99235 1.61822 1.07376 1.55059 1.01825 1.22417 1.00893 0.97086 0.92090 0.91520 0.92517 0.91685 0.77624 0.77193 0.91272 0.94770 0.92912 0.91651 0.90446 0.89857 0.91645 0.90624 0.92318 0.90754 0.91263 0.90658 0.94950 0.95794 0.90773 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.62 37.16 0.32 -1.12 16 2 C 0.08 0.81 2.02 -67.72 -0.14 0.67 16 3 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 4 C 0.18 2.34 2.05 -67.85 -0.14 2.20 16 5 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 6 N -0.75 -10.75 4.41 -58.60 -0.26 -11.01 16 7 C 0.70 13.45 8.53 -86.91 -0.74 12.71 16 8 O -0.60 -13.94 16.01 5.29 0.08 -13.85 16 9 N -0.72 -14.15 5.48 -65.23 -0.36 -14.51 16 10 C 0.18 4.22 5.50 -4.04 -0.02 4.19 16 11 C 0.03 0.67 1.38 -155.66 -0.21 0.45 16 12 C -0.50 -12.82 8.63 -34.44 -0.30 -13.11 16 13 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 14 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 15 N -0.87 -24.32 12.91 55.43 0.72 -23.61 16 16 Si 0.89 20.57 29.55 -169.99 -5.02 15.55 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 C -0.21 -4.38 9.96 -26.69 -0.27 -4.64 16 21 C -0.15 -3.39 9.42 -26.69 -0.25 -3.64 16 22 C -0.13 -1.73 5.58 -26.61 -0.15 -1.88 16 23 C -0.11 -1.19 6.09 -26.65 -0.16 -1.35 16 24 C 0.05 0.50 5.47 -3.83 -0.02 0.48 16 25 N -0.54 -5.33 4.75 -234.92 -1.11 -6.44 16 26 C 0.02 0.18 9.06 60.07 0.54 0.73 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.46 6.32 -51.93 -0.33 0.14 16 29 H 0.06 0.64 7.50 -51.93 -0.39 0.25 16 30 H 0.39 4.62 8.45 -40.82 -0.34 4.27 16 31 H 0.39 7.02 8.38 -40.82 -0.34 6.68 16 32 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 33 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 34 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 44 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 46 H 0.07 0.55 6.19 -51.93 -0.32 0.22 16 47 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -29.90 372.80 -10.39 -40.29 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -8.42 Total: 10.41 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.63 Total: -2.45 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -1.01 Total: -55.57 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.08 Total: -13.85 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.90 -10.39 -40.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430878698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.682 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds