Wall clock time and date at job start Fri Apr 10 2020 20:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46071 * 2 1 4 4 C 1.53043 * 109.45834 * 119.97332 * 2 1 3 5 5 H 1.09004 * 109.50013 * 59.21058 * 4 2 1 6 6 N 1.46494 * 109.50765 * 299.12604 * 4 2 1 7 7 C 1.34772 * 120.00106 * 154.99818 * 6 4 2 8 8 O 1.21586 * 120.00226 * 0.02562 * 7 6 4 9 9 N 1.34780 * 120.00346 * 180.02562 * 7 6 4 10 10 C 1.46493 * 120.00312 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47109 * 178.28749 * 10 9 7 12 12 C 1.50701 * 115.54907 * 65.14154 * 11 10 9 13 13 H 1.07999 * 119.99579 * 265.40105 * 12 11 10 14 14 C 1.37872 * 120.00097 * 85.40979 * 12 11 10 15 15 N 1.31514 * 120.00072 * 353.54752 * 14 12 11 16 16 Si 1.86801 * 119.99776 * 173.55491 * 14 12 11 17 17 H 1.48505 * 109.47140 * 59.99889 * 16 14 12 18 18 H 1.48498 * 109.47081 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47079 * 299.99719 * 16 14 12 20 20 C 1.52998 * 117.49744 * 279.47071 * 11 10 9 21 21 C 1.53003 * 117.49850 * 210.81083 * 11 10 9 22 22 C 1.53120 * 109.27736 * 179.18123 * 4 2 1 23 23 C 1.53117 * 109.16253 * 302.35037 * 22 4 2 24 24 C 1.53041 * 109.28085 * 57.65200 * 23 22 4 25 25 N 1.46845 * 109.45393 * 240.02321 * 2 1 3 26 26 C 1.46897 * 111.00081 * 54.15412 * 25 2 1 27 27 H 1.08999 * 109.47510 * 300.00659 * 1 2 3 28 28 H 1.09005 * 109.46839 * 59.99858 * 1 2 3 29 29 H 1.08999 * 109.47640 * 179.97438 * 1 2 3 30 30 H 0.96996 * 119.99677 * 335.00051 * 6 4 2 31 31 H 0.97005 * 119.99436 * 359.97438 * 9 7 6 32 32 H 1.08998 * 109.46942 * 298.28423 * 10 9 7 33 33 H 1.08998 * 109.47196 * 58.28693 * 10 9 7 34 34 H 0.96998 * 119.99742 * 185.06573 * 15 14 12 35 35 H 1.09005 * 117.49842 * 359.97438 * 20 11 10 36 36 H 1.08996 * 117.50151 * 145.01847 * 20 11 10 37 37 H 1.08992 * 117.49576 * 214.98015 * 21 11 10 38 38 H 1.09008 * 117.49576 * 359.97438 * 21 11 10 39 39 H 1.09005 * 109.51982 * 62.25254 * 22 4 2 40 40 H 1.08993 * 109.52484 * 182.44189 * 22 4 2 41 41 H 1.09000 * 109.50461 * 177.58906 * 23 22 4 42 42 H 1.09001 * 109.50665 * 297.67299 * 23 22 4 43 43 H 1.09008 * 109.45931 * 60.83343 * 24 23 22 44 44 H 1.09002 * 109.46637 * 180.80328 * 24 23 22 45 45 H 1.08996 * 109.47104 * 59.99757 * 26 25 2 46 46 H 1.09000 * 109.46871 * 180.02562 * 26 25 2 47 47 H 1.09000 * 109.46965 * 300.00149 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 1.2500 5 1 1.6651 -1.7445 1.2580 6 7 1.5691 -0.0183 2.4462 7 6 1.4405 -0.6832 3.6114 8 8 1.7156 -1.8660 3.6700 9 7 1.0068 -0.0369 4.7118 10 6 0.8676 -0.7594 5.9785 11 6 0.4033 0.2080 7.0692 12 6 -0.9731 0.7911 6.8778 13 1 -1.0908 1.7513 6.3976 14 6 -2.0821 0.0989 7.3159 15 7 -1.9517 -1.1230 7.7847 16 14 -3.7697 0.8965 7.2434 17 1 -4.0945 1.2406 5.8358 18 1 -4.7870 -0.0492 7.7687 19 1 -3.7692 2.1317 8.0676 20 6 1.4630 1.0978 7.7220 21 6 0.8588 -0.0721 8.5027 22 6 3.5709 -0.7364 1.2356 23 6 4.0545 -1.4193 -0.0467 24 6 3.4863 -0.6781 -1.2591 25 7 2.0191 -0.6918 -1.1994 26 6 1.4371 -0.1106 -2.4165 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.3499 0.9254 2.3995 31 1 0.7877 0.9069 4.6651 32 1 0.1331 -1.5565 5.8633 33 1 1.8291 -1.1891 6.2593 34 1 -2.7387 -1.6370 8.0241 35 1 2.4910 0.9936 7.3749 36 1 1.1646 2.1048 8.0135 37 1 0.1631 0.1656 9.3073 38 1 1.4889 -0.9460 8.6688 39 1 3.9458 0.2866 1.2671 40 1 3.9378 -1.2867 2.1019 41 1 5.1436 -1.3953 -0.0833 42 1 3.7126 -2.4542 -0.0592 43 1 3.8403 0.3529 -1.2532 44 1 3.8171 -1.1703 -2.1737 45 1 1.7120 0.9421 -2.4837 46 1 1.8158 -0.6418 -3.2897 47 1 0.3515 -0.2009 -2.3791 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430878699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:54 Heat of formation + Delta-G solvation = -8.492965 kcal Electronic energy + Delta-G solvation = -24689.492677 eV Core-core repulsion = 21293.638228 eV Total energy + Delta-G solvation = -3395.854449 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11326 -38.72141 -36.72315 -34.64751 -33.46025 -33.12179 -31.95640 -30.75718 -27.37370 -26.52736 -25.96849 -25.01137 -22.70110 -21.55241 -21.17714 -20.22547 -19.88920 -19.34343 -17.67242 -16.56269 -15.93714 -15.57252 -15.22910 -14.94710 -14.68464 -14.59618 -14.23324 -14.03795 -13.77083 -13.54735 -13.22752 -12.75000 -12.62274 -12.42030 -12.28105 -12.01743 -11.89074 -11.73876 -11.55377 -11.18286 -10.98875 -10.96799 -10.92114 -10.80332 -10.53644 -10.36450 -10.25293 -9.68672 -9.47258 -8.95323 -8.77158 -8.53672 -8.47830 -8.23246 -7.93138 -6.05911 -4.14635 3.12085 3.27385 3.33759 3.34581 3.80174 3.85221 4.36217 4.55592 4.70384 4.77429 4.88161 4.93384 5.09537 5.20400 5.22192 5.24492 5.25198 5.38096 5.45630 5.51060 5.59350 5.66095 5.70897 5.78731 5.85830 5.99260 6.05497 6.14758 6.22015 6.32247 6.36813 6.49740 6.62808 6.71263 6.74326 6.85057 6.89161 6.98235 7.10906 7.37552 7.44510 7.50271 7.64527 7.82740 8.36050 8.71603 8.85802 9.26955 9.51923 11.01910 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.020106 B = 0.003624 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.306603 B = 7723.728011 C = 8638.967576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 H 0.042 0.958 4 C 0.176 3.824 5 H 0.096 0.904 6 N -0.749 5.749 7 C 0.700 3.300 8 O -0.601 6.601 9 N -0.721 5.721 10 C 0.183 3.817 11 C 0.029 3.971 12 C -0.501 4.501 13 H 0.058 0.942 14 C 0.075 3.925 15 N -0.874 5.874 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.211 4.211 21 C -0.148 4.148 22 C -0.133 4.133 23 C -0.115 4.115 24 C 0.055 3.945 25 N -0.535 5.535 26 C 0.023 3.977 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.391 0.609 31 H 0.395 0.605 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.032 0.968 44 H 0.075 0.925 45 H 0.023 0.977 46 H 0.067 0.933 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.653 4.132 -17.201 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 H 0.060 0.940 4 C 0.069 3.931 5 H 0.114 0.886 6 N -0.405 5.405 7 C 0.400 3.600 8 O -0.481 6.481 9 N -0.373 5.373 10 C 0.059 3.941 11 C 0.028 3.972 12 C -0.539 4.539 13 H 0.077 0.923 14 C -0.130 4.130 15 N -0.509 5.509 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.248 4.248 21 C -0.186 4.186 22 C -0.172 4.172 23 C -0.153 4.153 24 C -0.073 4.073 25 N -0.261 5.261 26 C -0.125 4.125 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.224 0.776 31 H 0.228 0.772 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.042 0.958 46 H 0.086 0.914 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.628 2.382 -16.921 19.143 hybrid contribution -0.924 2.126 -0.075 2.320 sum 7.704 4.508 -16.996 19.198 Atomic orbital electron populations 1.21932 0.93613 1.03204 1.01875 1.21805 0.96069 0.95256 0.89992 0.93962 1.20622 0.92904 0.97542 0.81999 0.88636 1.45093 1.73629 1.12970 1.08766 1.16000 0.78614 0.85116 0.80273 1.90870 1.58179 1.14242 1.84761 1.45144 1.69538 1.13593 1.09033 1.20830 0.98041 0.94476 0.80728 1.19033 0.92837 0.95330 0.89955 1.20285 0.88780 1.04814 1.39973 0.92342 1.24975 0.98860 0.94878 0.94253 1.69964 1.29690 1.08984 1.42308 0.86702 0.83903 0.79253 0.78355 1.20309 1.21278 1.20242 1.23016 0.97043 0.95814 1.08957 1.22490 1.01999 0.96817 0.97298 1.22031 0.96064 1.00717 0.98388 1.21549 0.99753 1.00564 0.93438 1.22145 0.87085 0.98882 0.99200 1.61825 1.07277 1.55101 1.01870 1.22416 1.00982 0.97036 0.92040 0.91535 0.92521 0.91444 0.77622 0.77199 0.91242 0.94808 0.92783 0.91682 0.90451 0.89851 0.91654 0.92411 0.90780 0.91313 0.90714 0.94998 0.90665 0.95803 0.91403 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.62 37.16 0.32 -1.28 16 2 C 0.08 0.84 2.02 -67.72 -0.14 0.70 16 3 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 4 C 0.18 2.33 2.05 -67.85 -0.14 2.19 16 5 H 0.10 1.56 7.58 -51.93 -0.39 1.17 16 6 N -0.75 -10.77 4.41 -58.60 -0.26 -11.02 16 7 C 0.70 13.47 8.53 -86.92 -0.74 12.72 16 8 O -0.60 -13.95 16.01 5.29 0.08 -13.86 16 9 N -0.72 -14.17 5.48 -65.23 -0.36 -14.53 16 10 C 0.18 4.22 5.50 -4.04 -0.02 4.20 16 11 C 0.03 0.69 1.38 -155.66 -0.21 0.47 16 12 C -0.50 -12.86 8.63 -34.44 -0.30 -13.15 16 13 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 14 C 0.07 1.98 5.39 -17.82 -0.10 1.88 16 15 N -0.87 -24.33 12.91 55.43 0.72 -23.62 16 16 Si 0.89 20.56 29.55 -169.99 -5.02 15.54 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.21 -4.39 9.96 -26.69 -0.27 -4.66 16 21 C -0.15 -3.39 9.42 -26.69 -0.25 -3.64 16 22 C -0.13 -1.61 5.58 -26.61 -0.15 -1.76 16 23 C -0.11 -1.14 6.09 -26.65 -0.16 -1.31 16 24 C 0.05 0.49 5.46 -3.83 -0.02 0.47 16 25 N -0.54 -5.42 4.75 -234.92 -1.11 -6.54 16 26 C 0.02 0.19 9.05 60.06 0.54 0.73 16 27 H 0.07 0.74 7.51 -51.93 -0.39 0.35 16 28 H 0.06 0.51 6.32 -51.93 -0.33 0.18 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.39 4.63 8.46 -40.82 -0.35 4.28 16 31 H 0.39 7.03 8.38 -40.82 -0.34 6.69 16 32 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 33 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 37 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 38 H 0.06 1.43 8.14 -51.92 -0.42 1.01 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.03 0.28 8.14 -51.92 -0.42 -0.14 16 44 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 45 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.07 0.48 8.09 -51.93 -0.42 0.05 16 47 H 0.07 0.59 6.21 -51.93 -0.32 0.26 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -29.84 372.80 -10.39 -40.23 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -8.42 Total: 10.61 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.63 Total: -2.42 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -1.01 Total: -55.71 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.08 Total: -13.86 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.84 -10.39 -40.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430878699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.735 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds