Wall clock time and date at job start Fri Apr 10 2020 20:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.45980 * 2 1 4 4 C 1.53033 * 109.46510 * 119.97787 * 2 1 3 5 5 H 1.09005 * 109.50510 * 299.17032 * 4 2 1 6 6 N 1.46503 * 109.50513 * 59.24405 * 4 2 1 7 7 C 1.34775 * 120.00183 * 204.92236 * 6 4 2 8 8 O 1.21586 * 120.00108 * 359.97438 * 7 6 4 9 9 N 1.34772 * 119.99881 * 179.97438 * 7 6 4 10 10 C 1.46501 * 120.00001 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47297 * 184.79611 * 10 9 7 12 12 C 1.50704 * 115.55090 * 294.82254 * 11 10 9 13 13 H 1.07997 * 119.99990 * 95.14625 * 12 11 10 14 14 C 1.37872 * 119.99870 * 275.15696 * 12 11 10 15 15 N 1.31518 * 120.00152 * 5.23653 * 14 12 11 16 16 Si 1.86798 * 119.99847 * 185.24095 * 14 12 11 17 17 H 1.48504 * 109.47221 * 179.97438 * 16 14 12 18 18 H 1.48496 * 109.47476 * 299.99562 * 16 14 12 19 19 H 1.48502 * 109.47389 * 60.00154 * 16 14 12 20 20 C 1.53000 * 117.50019 * 80.49060 * 11 10 9 21 21 C 1.53002 * 117.50210 * 149.15191 * 11 10 9 22 22 C 1.53119 * 109.31274 * 179.20717 * 4 2 1 23 23 C 1.53202 * 109.11496 * 302.36387 * 22 4 2 24 24 C 1.53029 * 109.30039 * 57.62727 * 23 22 4 25 25 N 1.46845 * 109.52685 * 300.82264 * 24 23 22 26 26 C 1.46902 * 111.00185 * 185.83556 * 25 24 23 27 27 H 1.09004 * 109.47307 * 300.01872 * 1 2 3 28 28 H 1.08993 * 109.47474 * 60.02243 * 1 2 3 29 29 H 1.09006 * 109.46659 * 180.02562 * 1 2 3 30 30 H 0.97000 * 119.99677 * 24.91861 * 6 4 2 31 31 H 0.97005 * 120.00158 * 0.02562 * 9 7 6 32 32 H 1.08996 * 109.47519 * 64.79508 * 10 9 7 33 33 H 1.08998 * 109.47207 * 304.79240 * 10 9 7 34 34 H 0.96996 * 119.99918 * 174.99751 * 15 14 12 35 35 H 1.08999 * 117.50051 * 215.00850 * 20 11 10 36 36 H 1.08998 * 117.49583 * 0.02562 * 20 11 10 37 37 H 1.08999 * 117.49154 * 359.97438 * 21 11 10 38 38 H 1.08992 * 117.50086 * 144.99675 * 21 11 10 39 39 H 1.08992 * 109.52186 * 62.22994 * 22 4 2 40 40 H 1.08997 * 109.51977 * 182.42035 * 22 4 2 41 41 H 1.09005 * 109.49015 * 297.67918 * 23 22 4 42 42 H 1.08997 * 109.52626 * 177.60031 * 23 22 4 43 43 H 1.09006 * 109.46782 * 180.80493 * 24 23 22 44 44 H 1.09004 * 109.45374 * 60.83365 * 24 23 22 45 45 H 1.08995 * 109.47636 * 295.79116 * 26 25 24 46 46 H 1.09001 * 109.46491 * 55.79218 * 26 25 24 47 47 H 1.09004 * 109.47092 * 175.78567 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 1.2498 5 1 1.6890 -0.1986 2.1399 6 7 1.5371 -2.0969 1.2602 7 6 1.4102 -2.7593 2.4271 8 8 1.7134 -2.2150 3.4712 9 7 0.9471 -4.0249 2.4366 10 6 0.8086 -4.7447 3.7051 11 6 0.3813 -6.1876 3.4287 12 6 -0.9843 -6.3547 2.8136 13 1 -1.0864 -6.4465 1.7424 14 6 -2.1032 -6.3900 3.6183 15 7 -1.9906 -6.1753 4.9110 16 14 -3.7791 -6.7431 2.8727 17 1 -4.8100 -6.7259 3.9415 18 1 -4.0987 -5.7055 1.8595 19 1 -3.7611 -8.0790 2.2245 20 6 1.4696 -7.1794 3.0127 21 6 0.8504 -7.2637 4.4101 22 6 3.5710 -0.7363 1.2364 23 6 4.0546 -1.4190 -0.0470 24 6 3.4862 -0.6779 -1.2592 25 7 2.0191 -0.6917 -1.1994 26 6 1.4370 -0.1104 -2.4165 27 1 -0.3634 0.5141 0.8898 28 1 -0.3634 0.5134 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.2955 -2.5313 0.4272 31 1 0.7055 -4.4593 1.6036 32 1 0.0548 -4.2542 4.3208 33 1 1.7639 -4.7430 4.2300 34 1 -2.7848 -6.1281 5.4657 35 1 1.1979 -7.9525 2.2940 36 1 2.4900 -6.8039 2.9363 37 1 1.4638 -6.9436 5.2523 38 1 0.1714 -8.0923 4.6108 39 1 3.9457 0.2867 1.2680 40 1 3.9373 -1.2864 2.1031 41 1 3.7122 -2.4538 -0.0597 42 1 5.1437 -1.3957 -0.0839 43 1 3.8171 -1.1701 -2.1739 44 1 3.8402 0.3531 -1.2532 45 1 1.7117 0.9422 -2.4838 46 1 1.8160 -0.6414 -3.2898 47 1 0.3514 -0.2010 -2.3792 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430878701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:56 Heat of formation + Delta-G solvation = -7.671886 kcal Electronic energy + Delta-G solvation = -25048.920770 eV Core-core repulsion = 21653.101926 eV Total energy + Delta-G solvation = -3395.818844 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.20341 -38.58075 -36.65198 -34.44682 -33.26158 -33.05001 -31.92929 -30.82009 -27.40300 -26.50884 -25.94241 -24.95319 -22.84813 -21.58960 -21.16569 -20.45051 -19.40262 -18.97433 -17.69865 -16.32677 -15.97161 -15.64091 -15.22750 -14.91527 -14.67096 -14.58634 -14.13950 -13.96798 -13.66323 -13.34670 -13.31572 -12.78481 -12.54814 -12.42744 -12.21302 -12.05022 -11.81618 -11.69228 -11.54750 -11.44658 -10.95670 -10.90683 -10.88943 -10.61782 -10.50693 -10.29201 -10.21679 -9.63199 -9.41698 -8.91900 -8.70341 -8.48632 -8.44738 -8.18251 -7.85176 -6.03278 -4.11847 3.29506 3.34666 3.35439 3.36857 3.72200 3.94016 4.38697 4.57352 4.71491 4.83250 4.90893 4.99725 5.15148 5.24147 5.25060 5.25641 5.30110 5.40365 5.44068 5.56748 5.60573 5.64541 5.71396 5.81773 5.91363 5.93914 6.09771 6.15883 6.23791 6.28572 6.40481 6.53701 6.67781 6.75383 6.83240 6.88442 6.95025 7.06690 7.14548 7.43604 7.52078 7.53775 7.77651 7.85529 8.39428 8.82679 8.89519 9.36291 9.54668 11.04641 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.017631 B = 0.004066 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.720654 B = 6884.859127 C = 7597.176625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 H 0.051 0.949 4 C 0.177 3.823 5 H 0.089 0.911 6 N -0.736 5.736 7 C 0.697 3.303 8 O -0.609 6.609 9 N -0.722 5.722 10 C 0.184 3.816 11 C 0.029 3.971 12 C -0.499 4.499 13 H 0.059 0.941 14 C 0.074 3.926 15 N -0.875 5.875 16 Si 0.890 3.110 17 H -0.288 1.288 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.210 4.210 21 C -0.148 4.148 22 C -0.135 4.135 23 C -0.115 4.115 24 C 0.057 3.943 25 N -0.538 5.538 26 C 0.022 3.978 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.400 0.600 31 H 0.395 0.605 32 H 0.067 0.933 33 H 0.034 0.966 34 H 0.262 0.738 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.030 0.970 45 H 0.022 0.978 46 H 0.066 0.934 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.569 11.759 -13.046 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 H 0.068 0.932 4 C 0.071 3.929 5 H 0.107 0.893 6 N -0.393 5.393 7 C 0.397 3.603 8 O -0.490 6.490 9 N -0.374 5.374 10 C 0.060 3.940 11 C 0.028 3.972 12 C -0.536 4.536 13 H 0.077 0.923 14 C -0.130 4.130 15 N -0.511 5.511 16 Si 0.718 3.282 17 H -0.213 1.213 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.247 4.247 21 C -0.186 4.186 22 C -0.174 4.174 23 C -0.153 4.153 24 C -0.071 4.071 25 N -0.263 5.263 26 C -0.126 4.126 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.235 0.765 31 H 0.229 0.771 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.049 0.951 45 H 0.041 0.959 46 H 0.085 0.915 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.570 11.697 -11.826 18.711 hybrid contribution -0.916 0.271 -1.133 1.482 sum 7.654 11.968 -12.959 19.229 Atomic orbital electron populations 1.21911 0.93610 1.03392 1.01679 1.21928 0.96122 0.95378 0.89973 0.93153 1.20659 0.92709 0.82744 0.96836 0.89348 1.44993 1.71580 1.14602 1.08086 1.16083 0.78717 0.81747 0.83753 1.90849 1.58352 1.68500 1.31256 1.45131 1.68399 1.12270 1.11572 1.20796 0.98135 0.92188 0.82891 1.19042 0.92686 0.86374 0.99089 1.20297 0.89013 1.51630 0.92690 0.92323 1.24974 0.98839 0.94489 0.94690 1.69969 1.29244 1.47575 1.04300 0.86703 0.83824 0.78909 0.78780 1.21331 1.20298 1.20254 1.23002 0.96967 1.05404 0.99365 1.22488 1.02099 1.03312 0.90738 1.22035 0.96170 1.00633 0.98545 1.21555 0.99432 1.00731 0.93583 1.22114 0.87055 0.98741 0.99175 1.61871 1.07303 1.55076 1.02058 1.22421 1.00959 0.96966 0.92217 0.91906 0.92531 0.91103 0.76510 0.77115 0.91494 0.94743 0.92845 0.90478 0.91691 0.91714 0.89873 0.91922 0.90763 0.90765 0.91781 0.90822 0.95129 0.95911 0.91487 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.60 37.16 0.32 -1.22 16 2 C 0.07 0.77 2.15 -67.73 -0.15 0.63 16 3 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 4 C 0.18 2.28 2.26 -67.85 -0.15 2.13 16 5 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 6 N -0.74 -10.82 3.71 -58.60 -0.22 -11.04 16 7 C 0.70 13.52 8.53 -86.92 -0.74 12.78 16 8 O -0.61 -14.08 16.00 5.29 0.08 -14.00 16 9 N -0.72 -14.46 5.48 -65.23 -0.36 -14.82 16 10 C 0.18 4.29 5.50 -4.04 -0.02 4.26 16 11 C 0.03 0.69 1.39 -155.66 -0.22 0.47 16 12 C -0.50 -12.90 8.59 -34.44 -0.30 -13.19 16 13 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 14 C 0.07 1.98 5.40 -17.82 -0.10 1.88 16 15 N -0.87 -24.48 12.90 55.43 0.72 -23.76 16 16 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.21 -4.44 9.96 -26.69 -0.27 -4.71 16 21 C -0.15 -3.44 9.42 -26.69 -0.25 -3.69 16 22 C -0.13 -1.60 5.68 -26.57 -0.15 -1.75 16 23 C -0.12 -1.18 5.93 -26.61 -0.16 -1.33 16 24 C 0.06 0.51 5.46 -3.84 -0.02 0.49 16 25 N -0.54 -5.17 4.22 -234.93 -0.99 -6.16 16 26 C 0.02 0.18 9.05 60.07 0.54 0.72 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.49 6.32 -51.93 -0.33 0.17 16 29 H 0.07 0.84 7.40 -51.93 -0.38 0.45 16 30 H 0.40 5.39 7.92 -40.82 -0.32 5.07 16 31 H 0.40 7.34 8.35 -40.82 -0.34 6.99 16 32 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 33 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 35 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 0.87 7.73 -51.93 -0.40 0.47 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 44 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 47 H 0.07 0.58 6.21 -51.93 -0.32 0.26 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -29.39 370.70 -10.23 -39.62 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -8.37 Total: 11.43 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.65 Total: -2.52 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.85 Total: -55.78 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -14.00 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.39 -10.23 -39.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430878701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.951 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds