Wall clock time and date at job start Fri Apr 10 2020 20:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.44852 * 2 1 4 4 C 1.53038 * 109.46331 * 240.02917 * 2 1 3 5 5 H 1.09001 * 109.53597 * 60.84052 * 4 2 1 6 6 N 1.46499 * 109.49940 * 300.74134 * 4 2 1 7 7 C 1.34773 * 119.99960 * 155.19677 * 6 4 2 8 8 O 1.21590 * 120.00150 * 0.02562 * 7 6 4 9 9 N 1.34770 * 120.00404 * 180.02562 * 7 6 4 10 10 C 1.46507 * 120.00535 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47398 * 181.04523 * 10 9 7 12 12 C 1.50705 * 115.54808 * 39.68036 * 11 10 9 13 13 H 1.07999 * 119.99796 * 264.53066 * 12 11 10 14 14 C 1.37875 * 120.00088 * 84.53223 * 12 11 10 15 15 N 1.31515 * 120.00184 * 352.91822 * 14 12 11 16 16 Si 1.86800 * 119.99997 * 172.91432 * 14 12 11 17 17 H 1.48496 * 109.46871 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46945 * 119.99909 * 16 14 12 19 19 H 1.48497 * 109.47083 * 240.00088 * 16 14 12 20 20 C 1.52994 * 117.50080 * 253.97013 * 11 10 9 21 21 C 1.52994 * 60.00030 * 252.51211 * 20 11 10 22 22 C 1.53117 * 109.27589 * 180.80588 * 4 2 1 23 23 C 1.53118 * 109.16267 * 57.65114 * 22 4 2 24 24 C 1.53032 * 109.27826 * 302.34404 * 23 22 4 25 25 N 1.46840 * 109.46094 * 119.98129 * 2 1 3 26 26 C 1.46905 * 110.99607 * 305.86323 * 25 2 1 27 27 H 1.08998 * 109.46741 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47152 * 299.97630 * 1 2 3 29 29 H 1.08997 * 109.46545 * 59.97417 * 1 2 3 30 30 H 0.97001 * 120.00055 * 335.20606 * 6 4 2 31 31 H 0.97006 * 119.99882 * 359.97438 * 9 7 6 32 32 H 1.09007 * 109.46410 * 301.04671 * 10 9 7 33 33 H 1.09000 * 109.46946 * 61.04149 * 10 9 7 34 34 H 0.97000 * 120.00457 * 185.03036 * 15 14 12 35 35 H 1.09003 * 117.49580 * 359.97438 * 20 11 10 36 36 H 1.09002 * 117.49852 * 145.01968 * 20 11 10 37 37 H 1.09003 * 117.50297 * 252.50686 * 21 20 11 38 38 H 1.09005 * 117.50518 * 107.48978 * 21 20 11 39 39 H 1.09000 * 109.52564 * 297.74677 * 22 4 2 40 40 H 1.09002 * 109.57143 * 177.58487 * 22 4 2 41 41 H 1.09008 * 109.50570 * 182.40251 * 23 22 4 42 42 H 1.08999 * 109.50156 * 62.28911 * 23 22 4 43 43 H 1.09000 * 109.46518 * 179.19375 * 24 23 22 44 44 H 1.09000 * 109.46466 * 299.17531 * 24 23 22 45 45 H 1.09008 * 109.46709 * 291.84522 * 26 25 2 46 46 H 1.08997 * 109.47136 * 51.83796 * 26 25 2 47 47 H 1.08993 * 109.46960 * 171.84366 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7208 -1.2500 5 1 1.6895 -0.1987 -2.1403 6 7 1.5374 -2.0969 -1.2602 7 6 1.4126 -2.7600 -2.4268 8 8 1.7177 -2.2165 -3.4708 9 7 0.9498 -4.0257 -2.4364 10 6 0.8147 -4.7469 -3.7045 11 6 0.2479 -6.1431 -3.4395 12 6 -0.8335 -6.2175 -2.3925 13 1 -0.5816 -6.4695 -1.3730 14 6 -2.1444 -5.9639 -2.7361 15 7 -2.4349 -5.5223 -3.9404 16 14 -3.5080 -6.2475 -1.4913 17 1 -2.9221 -6.7423 -0.2196 18 1 -4.2242 -4.9708 -1.2421 19 1 -4.4615 -7.2545 -2.0223 20 6 1.2093 -7.3282 -3.5482 21 6 0.1485 -7.1023 -4.6272 22 6 3.5710 -0.7360 -1.2355 23 6 4.0548 -1.4187 0.0468 24 6 3.4865 -0.6776 1.2591 25 7 2.0193 -0.6919 1.1992 26 6 1.4371 -0.1109 2.4164 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5134 0.8901 29 1 -0.3632 0.5142 -0.8898 30 1 1.2942 -2.5306 -0.4273 31 1 0.7067 -4.4596 -1.6035 32 1 0.1402 -4.1999 -4.3634 33 1 1.7925 -4.8355 -4.1780 34 1 -3.3469 -5.2745 -4.1593 35 1 2.2456 -7.1132 -3.8090 36 1 1.0600 -8.1620 -2.8622 37 1 -0.6989 -7.7875 -4.6513 38 1 0.4868 -6.7387 -5.5975 39 1 3.9458 0.2871 -1.2671 40 1 3.9390 -1.2856 -2.1019 41 1 5.1440 -1.3946 0.0833 42 1 3.7126 -2.4535 0.0595 43 1 3.8175 -1.1697 2.1736 44 1 3.8402 0.3534 1.2531 45 1 1.8274 0.8967 2.5607 46 1 0.3525 -0.0694 2.3164 47 1 1.6994 -0.7286 3.2752 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430878702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:20:58 Heat of formation + Delta-G solvation = -6.509588 kcal Electronic energy + Delta-G solvation = -25210.121107 eV Core-core repulsion = 21814.352664 eV Total energy + Delta-G solvation = -3395.768443 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.14359 -38.50692 -36.63857 -34.39208 -33.20585 -32.98431 -31.97542 -30.76387 -27.34661 -26.48122 -25.86673 -25.01710 -22.79747 -21.52642 -21.12169 -20.40053 -19.41192 -18.92566 -17.55914 -16.32600 -15.92364 -15.61586 -15.15692 -14.90392 -14.63201 -14.56073 -14.11347 -13.96203 -13.62814 -13.30058 -13.18795 -12.71472 -12.52267 -12.36186 -12.18544 -11.99640 -11.81993 -11.75375 -11.56631 -11.38488 -11.02508 -10.88310 -10.85187 -10.56172 -10.49892 -10.23996 -10.18846 -9.62630 -9.35320 -8.89193 -8.64358 -8.48536 -8.42389 -8.20624 -7.70560 -6.06428 -4.15111 3.24757 3.34277 3.36084 3.43707 3.77771 4.02946 4.35705 4.62107 4.76397 4.87580 4.95460 5.08092 5.19984 5.23607 5.28515 5.29404 5.36034 5.41578 5.45236 5.60987 5.64000 5.69285 5.75908 5.88958 5.95325 5.99269 6.11771 6.21449 6.28415 6.33346 6.38135 6.55982 6.65554 6.77994 6.88723 6.93531 6.99094 7.13916 7.14653 7.42235 7.46648 7.61448 7.82535 7.86461 8.38181 8.85880 8.96355 9.46293 9.51890 11.01338 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.004560 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.567377 B = 6138.754335 C = 7045.446509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 H 0.050 0.950 4 C 0.178 3.822 5 H 0.088 0.912 6 N -0.736 5.736 7 C 0.697 3.303 8 O -0.614 6.614 9 N -0.714 5.714 10 C 0.185 3.815 11 C 0.029 3.971 12 C -0.501 4.501 13 H 0.060 0.940 14 C 0.077 3.923 15 N -0.870 5.870 16 Si 0.887 3.113 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.211 4.211 21 C -0.153 4.153 22 C -0.135 4.135 23 C -0.115 4.115 24 C 0.057 3.943 25 N -0.537 5.537 26 C 0.020 3.980 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.400 0.600 31 H 0.400 0.600 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.261 0.739 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.030 0.970 45 H 0.022 0.978 46 H 0.075 0.925 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.944 10.498 10.992 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 H 0.068 0.932 4 C 0.071 3.929 5 H 0.106 0.894 6 N -0.393 5.393 7 C 0.397 3.603 8 O -0.495 6.495 9 N -0.367 5.367 10 C 0.061 3.939 11 C 0.028 3.972 12 C -0.539 4.539 13 H 0.079 0.921 14 C -0.127 4.127 15 N -0.505 5.505 16 Si 0.715 3.285 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.248 4.248 21 C -0.191 4.191 22 C -0.174 4.174 23 C -0.153 4.153 24 C -0.070 4.070 25 N -0.263 5.263 26 C -0.128 4.128 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.235 0.765 31 H 0.235 0.765 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.040 0.960 46 H 0.094 0.906 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.885 10.475 9.837 16.895 hybrid contribution -0.826 0.332 1.398 1.657 sum 8.059 10.807 11.235 17.549 Atomic orbital electron populations 1.21936 0.93630 1.03503 1.01626 1.21921 0.96105 0.95358 0.90028 0.93216 1.20641 0.92642 0.82838 0.96778 0.89395 1.44972 1.71600 1.14521 1.08178 1.16084 0.78745 0.81822 0.83689 1.90831 1.58634 1.68734 1.31278 1.45094 1.67828 1.12054 1.11679 1.20657 0.97095 0.92702 0.83462 1.19053 0.95059 0.85888 0.97174 1.20311 0.90086 1.49346 0.94111 0.92146 1.24971 0.98456 0.94407 0.94906 1.69992 1.19638 1.41647 1.19241 0.86621 0.82332 0.77912 0.81627 1.19674 1.21105 1.20994 1.23076 0.93989 1.03523 1.04232 1.22490 0.99247 1.04820 0.92517 1.22020 0.96235 1.00566 0.98532 1.21543 0.99372 1.00780 0.93603 1.22110 0.87061 0.98704 0.99170 1.61869 1.07279 1.55070 1.02047 1.22462 1.00851 0.97170 0.92316 0.91013 0.92487 0.91899 0.76482 0.76491 0.91868 0.95039 0.92952 0.91634 0.90487 0.89995 0.91711 0.91987 0.90793 0.91821 0.90723 0.90852 0.95150 0.95950 0.90606 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.63 37.16 0.32 -1.34 16 2 C 0.07 0.82 2.15 -67.72 -0.15 0.67 16 3 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.18 2.40 2.26 -67.85 -0.15 2.25 16 5 H 0.09 1.36 7.58 -51.93 -0.39 0.96 16 6 N -0.74 -11.44 3.71 -58.60 -0.22 -11.65 16 7 C 0.70 14.03 8.53 -86.93 -0.74 13.29 16 8 O -0.61 -14.48 16.01 5.29 0.08 -14.40 16 9 N -0.71 -14.92 5.34 -65.22 -0.35 -15.27 16 10 C 0.19 4.33 5.75 -4.04 -0.02 4.30 16 11 C 0.03 0.69 1.71 -155.66 -0.27 0.42 16 12 C -0.50 -12.72 7.43 -34.44 -0.26 -12.97 16 13 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 14 C 0.08 2.03 5.39 -17.82 -0.10 1.93 16 15 N -0.87 -24.10 12.97 55.43 0.72 -23.38 16 16 Si 0.89 20.34 29.55 -169.99 -5.02 15.32 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.21 -4.49 9.88 -26.74 -0.26 -4.75 16 21 C -0.15 -3.53 9.51 -26.74 -0.25 -3.78 16 22 C -0.13 -1.65 5.67 -26.61 -0.15 -1.80 16 23 C -0.12 -1.23 5.93 -26.65 -0.16 -1.39 16 24 C 0.06 0.54 5.46 -3.83 -0.02 0.52 16 25 N -0.54 -5.50 4.22 -234.92 -0.99 -6.50 16 26 C 0.02 0.17 9.30 60.07 0.56 0.73 16 27 H 0.07 0.92 7.39 -51.93 -0.38 0.54 16 28 H 0.06 0.54 6.15 -51.93 -0.32 0.22 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.40 5.79 7.92 -40.82 -0.32 5.47 16 31 H 0.40 7.97 7.47 -40.82 -0.30 7.67 16 32 H 0.06 1.68 8.14 -51.93 -0.42 1.25 16 33 H 0.03 0.72 7.95 -51.93 -0.41 0.31 16 34 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 35 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 36 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 38 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 42 H 0.07 0.91 7.73 -51.93 -0.40 0.51 16 43 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 44 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.02 0.18 8.14 -51.92 -0.42 -0.25 16 46 H 0.08 0.64 5.75 -51.93 -0.30 0.34 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -29.11 368.68 -10.17 -39.28 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -8.30 Total: 12.95 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.65 Total: -1.91 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.84 Total: -56.80 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.08 Total: -14.40 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.11 -10.17 -39.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430878702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.771 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds