Wall clock time and date at job start Fri Apr 10 2020 20:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47597 * 2 1 4 4 N 1.46900 * 109.46876 * 239.99487 * 2 1 3 5 5 C 1.46899 * 111.00168 * 85.00193 * 4 2 1 6 6 C 1.52994 * 109.47508 * 179.97438 * 5 4 2 7 7 H 1.09007 * 109.47064 * 305.00429 * 6 5 4 8 8 C 1.47201 * 109.46816 * 64.99804 * 6 5 4 9 9 N 4.90931 * 82.27629 * 240.86033 * 2 1 3 10 10 C 1.52995 * 109.47343 * 185.00179 * 6 5 4 11 11 C 1.50699 * 109.47269 * 175.00447 * 10 6 5 12 12 H 1.08002 * 119.99854 * 359.97438 * 11 10 6 13 13 C 1.37875 * 120.00405 * 179.97438 * 11 10 6 14 14 N 1.31521 * 119.99534 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00258 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47297 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47145 * 120.00213 * 15 13 11 18 18 H 1.48500 * 109.47243 * 240.00031 * 15 13 11 19 19 C 1.53004 * 109.46928 * 119.99506 * 2 1 3 20 20 H 1.09004 * 109.46762 * 184.99616 * 19 2 1 21 21 C 1.53001 * 109.46966 * 64.99836 * 19 2 1 22 22 N 1.46894 * 109.47226 * 304.99704 * 19 2 1 23 23 C 1.47016 * 110.99844 * 179.97438 * 22 19 2 24 24 C 1.53103 * 109.29298 * 182.37346 * 23 22 19 25 25 O 1.43027 * 109.25318 * 303.22227 * 24 23 22 26 26 C 1.43015 * 113.77765 * 58.59866 * 25 24 23 27 27 C 1.47009 * 111.00295 * 303.63475 * 22 19 2 28 28 H 1.08992 * 109.47114 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46770 * 300.00215 * 1 2 3 30 30 H 1.09000 * 109.46832 * 60.00292 * 1 2 3 31 31 H 1.00901 * 111.00057 * 321.04298 * 4 2 1 32 32 H 1.09000 * 109.47039 * 300.00296 * 5 4 2 33 33 H 1.09001 * 109.46641 * 59.99689 * 5 4 2 34 34 H 1.09001 * 109.46803 * 294.99952 * 10 6 5 35 35 H 1.08995 * 109.47107 * 54.99902 * 10 6 5 36 36 H 0.97001 * 119.99329 * 180.02562 * 14 13 11 37 37 H 1.09005 * 109.47074 * 179.97438 * 21 19 2 38 38 H 1.08994 * 109.47374 * 300.00043 * 21 19 2 39 39 H 1.09006 * 109.46932 * 60.00249 * 21 19 2 40 40 H 1.09002 * 109.50934 * 302.33071 * 23 22 19 41 41 H 1.09003 * 109.50733 * 62.41665 * 23 22 19 42 42 H 1.08998 * 109.50917 * 63.10882 * 24 23 22 43 43 H 1.08998 * 109.50376 * 183.24332 * 24 23 22 44 44 H 1.08994 * 109.50450 * 181.41823 * 26 25 24 45 45 H 1.09003 * 109.53636 * 61.31228 * 26 25 24 46 46 H 1.09001 * 109.50528 * 297.54402 * 27 22 19 47 47 H 1.09005 * 109.50420 * 57.63178 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2223 -2.3469 6 6 2.5962 -0.5332 -3.5741 7 1 3.5520 -1.0014 -3.3387 8 6 1.6228 -1.5695 -3.9552 9 7 0.8703 -2.3689 -4.2491 10 6 2.7801 0.4456 -4.7356 11 6 3.4009 -0.2737 -5.9052 12 1 3.6407 -1.3239 -5.8278 13 6 3.6628 0.4088 -7.0743 14 7 3.3703 1.6875 -7.1687 15 14 4.4330 -0.4828 -8.5239 16 1 4.6628 -1.9052 -8.1648 17 1 3.5196 -0.4091 -9.6924 18 1 5.7284 0.1571 -8.8671 19 6 2.0400 -0.7212 1.2494 20 1 3.1264 -0.6443 1.2952 21 6 1.6352 -2.1954 1.1882 22 7 1.4543 -0.1018 2.4456 23 6 1.9225 -0.7708 3.6682 24 6 1.2443 -0.1346 4.8844 25 8 1.5173 1.2693 4.8959 26 6 1.0740 1.9526 3.7203 27 6 1.7509 1.3373 2.4927 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.4496 -1.4981 -1.4099 32 1 1.0871 0.6161 -2.5525 33 1 2.7589 1.0459 -2.1182 34 1 1.8102 0.8472 -5.0293 35 1 3.4318 1.2616 -4.4233 36 1 3.5542 2.1676 -7.9913 37 1 1.9989 -2.7093 2.0780 38 1 0.5489 -2.2723 1.1422 39 1 2.0699 -2.6550 0.3005 40 1 1.6696 -1.8301 3.6231 41 1 3.0033 -0.6581 3.7537 42 1 0.1677 -0.2949 4.8262 43 1 1.6318 -0.5889 5.7963 44 1 1.3382 3.0076 3.7912 45 1 -0.0075 1.8536 3.6271 46 1 2.8288 1.4848 2.5596 47 1 1.3733 1.8165 1.5893 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519636294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:21:08 Heat of formation + Delta-G solvation = -22.602163 kcal Electronic energy + Delta-G solvation = -24241.833021 eV Core-core repulsion = 20845.366751 eV Total energy + Delta-G solvation = -3396.466270 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.17121 -38.23548 -36.77758 -35.07059 -33.72330 -32.26289 -31.68109 -30.47985 -28.82522 -26.88655 -26.26953 -24.64594 -23.48219 -22.64675 -21.84736 -20.98887 -19.32837 -17.10400 -16.73195 -16.57634 -16.37179 -15.89241 -15.50049 -15.21659 -15.01508 -14.59001 -14.54659 -14.22510 -13.82875 -13.27366 -12.99134 -12.96686 -12.68822 -12.50059 -12.21409 -12.13166 -12.05317 -11.87547 -11.78901 -11.70829 -11.61220 -11.25352 -11.05527 -11.02326 -10.76948 -10.70300 -10.59149 -10.41671 -10.28770 -9.93665 -9.55571 -9.23078 -8.61927 -8.47581 -8.30431 -6.11420 -4.14435 3.27199 3.35456 3.38292 3.40627 3.55051 3.59530 3.61690 4.27073 4.40948 4.60666 4.63492 4.71219 4.78755 4.81506 4.86612 4.99940 5.02413 5.17678 5.25898 5.26787 5.34125 5.38762 5.40483 5.50142 5.50799 5.57075 5.62819 5.66300 5.69574 5.84399 5.87677 5.95788 6.10375 6.15688 6.26739 6.36563 6.52599 6.71557 6.77797 6.85509 7.11274 7.40637 7.43648 7.51212 7.83940 8.21348 8.38274 8.90409 9.51198 10.99518 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.029896 B = 0.002737 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.363632 B =10227.799487 C =10641.492193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.089 3.911 3 H 0.078 0.922 4 N -0.687 5.687 5 C 0.068 3.932 6 C 0.007 3.993 7 H 0.110 0.890 8 C 0.241 3.759 9 N -0.476 5.476 10 C 0.032 3.968 11 C -0.525 4.525 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.282 1.282 19 C 0.094 3.906 20 H 0.049 0.951 21 C -0.147 4.147 22 N -0.530 5.530 23 C 0.016 3.984 24 C 0.065 3.935 25 O -0.388 6.388 26 C 0.064 3.936 27 C 0.012 3.988 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.340 0.660 32 H 0.036 0.964 33 H 0.090 0.910 34 H 0.024 0.976 35 H 0.039 0.961 36 H 0.262 0.738 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.042 0.958 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.058 0.942 46 H 0.043 0.957 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.527 -0.518 23.624 23.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.021 4.021 3 H 0.096 0.904 4 N -0.318 5.318 5 C -0.061 4.061 6 C -0.015 4.015 7 H 0.128 0.872 8 C -0.076 4.076 9 N -0.154 5.154 10 C -0.006 4.006 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.208 1.208 19 C -0.014 4.014 20 H 0.067 0.933 21 C -0.204 4.204 22 N -0.256 5.256 23 C -0.113 4.113 24 C -0.012 4.012 25 O -0.307 6.307 26 C -0.013 4.013 27 C -0.116 4.116 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.042 0.958 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.400 -1.464 23.343 23.800 hybrid contribution 0.548 -0.060 -1.350 1.459 sum -3.853 -1.524 21.993 22.380 Atomic orbital electron populations 1.22415 0.96572 1.02348 1.02056 1.21508 0.93446 0.97447 0.89716 0.90357 1.60596 1.57314 1.10011 1.03864 1.22094 1.00310 0.95201 0.88540 1.19329 0.93892 0.91936 0.96355 0.87181 1.29338 0.93324 0.93278 0.91615 1.81054 1.11890 1.12075 1.10333 1.19161 0.98251 0.93180 0.90031 1.21183 1.41158 0.96219 0.97804 0.92457 1.24959 0.95544 0.94837 0.98685 1.69952 1.47714 1.08114 1.27249 0.86535 0.78998 0.80021 0.82529 1.19680 1.20999 1.20812 1.21561 0.96778 0.94674 0.88431 0.93260 1.21896 1.02030 0.94460 1.02029 1.62245 1.59136 1.02332 1.01933 1.22815 0.98207 0.99830 0.90408 1.22658 0.99764 0.81323 0.97504 1.87977 1.82182 1.20405 1.40098 1.22666 0.98485 0.96234 0.83879 1.22850 0.99473 0.89396 0.99875 0.92472 0.91128 0.93175 0.84099 0.94597 0.89207 0.95766 0.94244 0.92851 0.93034 0.92024 0.90981 0.89277 0.94007 0.92379 0.88674 0.88538 0.92355 0.93826 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 8.58 37.16 0.32 -1.52 16 2 C 0.09 0.95 1.89 -67.71 -0.13 0.82 16 3 H 0.08 0.83 6.25 -51.93 -0.32 0.51 16 4 N -0.69 -8.61 5.60 -106.73 -0.60 -9.21 16 5 C 0.07 0.98 4.92 -3.83 -0.02 0.96 16 6 C 0.01 0.12 2.42 -93.41 -0.23 -0.10 16 7 H 0.11 1.91 8.14 -51.92 -0.42 1.49 16 8 C 0.24 4.80 12.98 -20.74 -0.27 4.53 16 9 N -0.48 -10.25 18.54 42.17 0.78 -9.47 16 10 C 0.03 0.74 4.42 -27.89 -0.12 0.62 16 11 C -0.53 -13.92 8.60 -34.44 -0.30 -14.21 16 12 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 15 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.09 0.93 2.12 -67.71 -0.14 0.78 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 21 C -0.15 -1.39 8.34 37.16 0.31 -1.08 16 22 N -0.53 -4.76 3.69 -226.33 -0.84 -5.60 16 23 C 0.02 0.13 5.33 -3.71 -0.02 0.11 16 24 C 0.06 0.50 7.01 37.21 0.26 0.76 16 25 O -0.39 -3.80 10.83 -35.23 -0.38 -4.18 16 26 C 0.06 0.52 7.01 37.20 0.26 0.78 16 27 C 0.01 0.10 4.96 -3.72 -0.02 0.09 16 28 H 0.06 0.62 6.55 -51.93 -0.34 0.28 16 29 H 0.07 0.70 6.93 -51.93 -0.36 0.34 16 30 H 0.05 0.57 7.45 -51.93 -0.39 0.18 16 31 H 0.34 4.51 6.76 -39.29 -0.27 4.24 16 32 H 0.04 0.53 7.43 -51.93 -0.39 0.14 16 33 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 34 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.05 0.44 6.35 -51.93 -0.33 0.11 16 38 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 39 H 0.07 0.75 7.13 -51.93 -0.37 0.38 16 40 H 0.09 0.65 6.19 -51.93 -0.32 0.33 16 41 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.75 5.84 -51.93 -0.30 0.44 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -29.50 365.68 -7.90 -37.41 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.91 Total: -0.14 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -0.19 Total: -5.87 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.08 Total: -48.98 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.38 Total: -4.18 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.50 -7.90 -37.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519636294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.806 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds