Wall clock time and date at job start Fri Apr 10 2020 20:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46848 * 110.99699 * 2 1 4 4 C 1.53040 * 109.52357 * 174.15991 * 3 2 1 5 5 C 1.53120 * 109.27713 * 59.17495 * 4 3 2 6 6 C 1.53118 * 109.16433 * 302.34763 * 5 4 3 7 7 H 1.09006 * 109.50059 * 297.67521 * 6 5 4 8 8 C 1.52991 * 109.50621 * 177.59725 * 6 5 4 9 9 N 1.46501 * 109.47460 * 174.99976 * 8 6 5 10 10 C 1.34770 * 120.00227 * 179.97438 * 9 8 6 11 11 O 1.21589 * 120.00233 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99784 * 179.97438 * 10 9 8 13 13 C 1.46509 * 119.99835 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46953 * 184.78974 * 13 12 10 15 15 C 1.50694 * 115.54930 * 294.80479 * 14 13 12 16 16 H 1.08006 * 120.00204 * 99.44092 * 15 14 13 17 17 C 1.37879 * 120.00198 * 279.43473 * 15 14 13 18 18 N 1.31519 * 119.99870 * 5.42362 * 17 15 14 19 19 Si 1.86801 * 120.00114 * 185.42195 * 17 15 14 20 20 H 1.48498 * 109.46834 * 269.99882 * 19 17 15 21 21 H 1.48502 * 109.46775 * 150.00405 * 19 17 15 22 22 H 1.48491 * 109.47242 * 30.00307 * 19 17 15 23 23 C 1.53003 * 117.51627 * 80.50756 * 14 13 12 24 24 C 1.53003 * 60.00075 * 107.48004 * 23 14 13 25 25 C 1.46847 * 111.00319 * 235.78748 * 2 1 3 26 26 H 1.09002 * 109.47116 * 63.95703 * 1 2 3 27 27 H 1.08997 * 109.47348 * 183.95433 * 1 2 3 28 28 H 1.08994 * 109.47413 * 303.95796 * 1 2 3 29 29 H 1.08996 * 109.46782 * 54.13742 * 3 2 1 30 30 H 1.09008 * 109.46251 * 294.17042 * 3 2 1 31 31 H 1.08993 * 109.50088 * 299.23740 * 4 3 2 32 32 H 1.08998 * 109.53784 * 179.13599 * 4 3 2 33 33 H 1.08998 * 109.52149 * 182.44192 * 5 4 3 34 34 H 1.08996 * 109.57636 * 62.28919 * 5 4 3 35 35 H 1.08997 * 109.47611 * 54.99917 * 8 6 5 36 36 H 1.08999 * 109.47172 * 295.00084 * 8 6 5 37 37 H 0.97005 * 119.99343 * 0.02562 * 9 8 6 38 38 H 0.96993 * 120.00167 * 0.02562 * 12 10 9 39 39 H 1.08990 * 109.46985 * 64.78623 * 13 12 10 40 40 H 1.08999 * 109.46499 * 304.78508 * 13 12 10 41 41 H 0.97006 * 119.99323 * 354.99497 * 18 17 15 42 42 H 1.09000 * 117.49543 * 214.97120 * 23 14 13 43 43 H 1.09001 * 117.50307 * 359.97438 * 23 14 13 44 44 H 1.08995 * 117.49619 * 252.51220 * 24 23 14 45 45 H 1.08995 * 117.49832 * 107.49050 * 24 23 14 46 46 H 1.09003 * 109.46283 * 65.82052 * 25 2 1 47 47 H 1.08995 * 109.45973 * 305.85342 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 3.5182 -0.8714 -1.0208 7 1 3.7820 -1.3838 -0.0955 8 6 4.0681 -1.6558 -2.2136 9 7 3.5872 -3.0383 -2.1526 10 6 3.9461 -3.9194 -3.1073 11 8 4.6693 -3.5670 -4.0189 12 7 3.5040 -5.1914 -3.0508 13 6 3.8946 -6.1493 -4.0883 14 6 3.1682 -7.4759 -3.8570 15 6 3.5356 -8.2060 -2.5910 16 1 2.8987 -8.1339 -1.7217 17 6 4.6849 -8.9661 -2.5423 18 7 5.5149 -8.9692 -3.5625 19 14 5.0631 -9.9915 -1.0274 20 1 5.8548 -9.1819 -0.0668 21 1 5.8430 -11.1914 -1.4240 22 1 3.7924 -10.4163 -0.3873 23 6 1.7199 -7.5821 -4.3389 24 6 2.8313 -8.3207 -5.0874 25 6 1.9953 -0.7708 -1.1337 26 1 -0.3633 0.4512 -0.9233 27 1 -0.3634 -1.0252 0.0709 28 1 -0.3634 0.5740 0.8523 29 1 1.5633 1.9258 0.8328 30 1 1.7324 1.8609 -0.9377 31 1 3.7813 0.8569 1.0906 32 1 3.9104 2.3511 0.1314 33 1 5.1997 0.4715 -0.8904 34 1 3.8897 1.0350 -1.9564 35 1 5.1576 -1.6485 -2.1823 36 1 3.7283 -1.1935 -3.1403 37 1 3.0099 -3.3193 -1.4255 38 1 2.9274 -5.4726 -2.3234 39 1 4.9713 -6.3124 -4.0454 40 1 3.6256 -5.7537 -5.0677 41 1 5.2842 -8.4953 -4.3769 42 1 1.0329 -8.1801 -3.7401 43 1 1.2841 -6.7067 -4.8204 44 1 3.1268 -7.9312 -6.0615 45 1 2.8754 -9.4045 -4.9811 46 1 1.7325 -0.2710 -2.0660 47 1 1.5635 -1.7715 -1.1241 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562390541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:21:13 Heat of formation + Delta-G solvation = -22.147963 kcal Electronic energy + Delta-G solvation = -24148.520659 eV Core-core repulsion = 20752.074085 eV Total energy + Delta-G solvation = -3396.446574 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.85431 -39.01737 -37.06323 -35.24625 -33.46835 -33.21678 -31.93036 -31.09495 -27.18949 -26.75597 -25.27295 -24.62085 -23.13216 -21.78147 -21.35493 -20.40647 -19.87804 -19.59720 -17.81361 -16.68570 -16.01231 -15.87101 -15.68119 -15.03063 -14.76137 -14.60216 -14.35580 -13.98838 -13.77186 -13.49241 -13.34923 -13.09667 -12.91245 -12.68337 -12.55442 -12.36467 -12.29508 -11.79836 -11.58664 -11.32207 -10.92404 -10.91650 -10.80846 -10.73048 -10.60881 -10.49231 -10.15317 -9.80157 -9.56779 -8.87319 -8.65612 -8.64073 -8.50194 -8.38220 -8.04408 -6.37995 -4.14389 3.19041 3.40914 3.43795 3.59038 3.59105 3.77659 4.45008 4.47858 4.50211 4.59920 4.77416 4.78692 4.97749 5.08137 5.13935 5.17463 5.18699 5.29112 5.31120 5.44874 5.47952 5.52117 5.57374 5.60402 5.69380 5.77586 5.84053 5.89179 5.97047 6.15700 6.16093 6.25882 6.43815 6.53132 6.67339 6.74843 6.76012 6.77983 6.85797 7.18449 7.22226 7.28878 7.51661 8.18336 8.34497 8.62885 8.82802 9.17148 9.61793 11.01131 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.003087 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.806045 B = 9067.817865 C = 9221.244639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.054 3.946 4 C -0.116 4.116 5 C -0.114 4.114 6 C -0.096 4.096 7 H 0.087 0.913 8 C 0.148 3.852 9 N -0.753 5.753 10 C 0.698 3.302 11 O -0.605 6.605 12 N -0.719 5.719 13 C 0.177 3.823 14 C 0.007 3.993 15 C -0.576 4.576 16 H 0.053 0.947 17 C 0.029 3.971 18 N -0.900 5.900 19 Si 1.069 2.931 20 H -0.288 1.288 21 H -0.284 1.284 22 H -0.289 1.289 23 C -0.193 4.193 24 C -0.174 4.174 25 C 0.060 3.940 26 H 0.024 0.976 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.394 0.606 38 H 0.397 0.603 39 H 0.062 0.938 40 H 0.037 0.963 41 H 0.276 0.724 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.035 0.965 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.132 18.935 7.384 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.074 4.074 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.115 4.115 7 H 0.105 0.895 8 C 0.022 3.978 9 N -0.410 5.410 10 C 0.398 3.602 11 O -0.485 6.485 12 N -0.371 5.371 13 C 0.053 3.947 14 C 0.006 3.994 15 C -0.613 4.613 16 H 0.071 0.929 17 C -0.178 4.178 18 N -0.534 5.534 19 Si 0.898 3.102 20 H -0.215 1.215 21 H -0.210 1.210 22 H -0.215 1.215 23 C -0.230 4.230 24 C -0.212 4.212 25 C -0.068 4.068 26 H 0.042 0.958 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.228 0.772 38 H 0.231 0.769 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.104 0.896 46 H 0.054 0.946 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.150 18.010 7.610 20.497 hybrid contribution -2.052 1.094 -0.813 2.463 sum -8.202 19.104 6.798 21.873 Atomic orbital electron populations 1.22355 0.87158 1.02491 1.00351 1.61904 1.07625 1.13699 1.43581 1.22118 0.95805 0.89174 1.00324 1.21571 0.94251 1.00162 0.99387 1.21553 1.00411 0.94486 0.98774 1.21437 0.94468 0.96426 0.99192 0.89454 1.21097 0.99030 0.80289 0.97352 1.45101 1.56230 1.10597 1.29078 1.16033 0.80700 0.81113 0.82382 1.90869 1.42107 1.78879 1.36618 1.45033 1.53719 1.08034 1.30357 1.20872 0.99539 0.87008 0.87255 1.19337 0.92145 0.92731 0.95189 1.21212 1.11478 1.32137 0.96496 0.92917 1.25766 0.92457 0.96413 1.03132 1.70700 1.35532 1.42161 1.05048 0.83543 0.75623 0.76529 0.74554 1.21494 1.21012 1.21500 1.22843 0.93156 1.01766 1.05261 1.22771 1.04069 0.98805 0.95594 1.22154 0.94890 0.98441 0.91290 0.95750 0.91133 0.91399 0.90865 0.94996 0.90912 0.91357 0.91125 0.91874 0.91543 0.92099 0.77242 0.76901 0.91958 0.94433 0.91238 0.90130 0.91415 0.91296 0.89622 0.94630 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.59 60.06 0.58 0.77 16 2 N -0.54 -4.91 4.91 -242.96 -1.19 -6.10 16 3 C 0.05 0.42 5.46 -3.83 -0.02 0.40 16 4 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 5 C -0.11 -0.94 5.29 -26.61 -0.14 -1.08 16 6 C -0.10 -0.92 2.39 -90.54 -0.22 -1.13 16 7 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 8 C 0.15 1.84 5.07 -4.05 -0.02 1.82 16 9 N -0.75 -10.85 5.30 -65.23 -0.35 -11.19 16 10 C 0.70 13.65 8.57 -86.92 -0.74 12.91 16 11 O -0.61 -14.23 16.34 5.29 0.09 -14.14 16 12 N -0.72 -14.40 5.49 -65.22 -0.36 -14.76 16 13 C 0.18 4.10 5.36 -4.04 -0.02 4.08 16 14 C 0.01 0.16 0.91 -155.66 -0.14 0.02 16 15 C -0.58 -15.03 8.57 -34.44 -0.30 -15.32 16 16 H 0.05 1.37 7.82 -52.48 -0.41 0.96 16 17 C 0.03 0.79 5.42 -17.82 -0.10 0.69 16 18 N -0.90 -26.17 13.61 55.43 0.75 -25.42 16 19 Si 1.07 24.37 29.91 -169.99 -5.08 19.28 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 23 C -0.19 -4.01 9.96 -26.73 -0.27 -4.27 16 24 C -0.17 -3.90 8.97 -26.73 -0.24 -4.14 16 25 C 0.06 0.57 4.61 -3.83 -0.02 0.55 16 26 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.03 0.25 8.14 -51.92 -0.42 -0.17 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.39 4.74 7.69 -40.82 -0.31 4.42 16 38 H 0.40 7.31 8.35 -40.82 -0.34 6.96 16 39 H 0.06 1.65 7.64 -51.93 -0.40 1.25 16 40 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.28 8.00 6.08 -40.82 -0.25 7.76 16 42 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 45 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 46 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.75 7.20 -51.93 -0.37 0.37 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -31.35 374.29 -10.79 -42.13 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -8.48 Total: 10.30 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.81 Total: -5.73 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -1.14 Total: -57.48 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.09 Total: -14.14 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.08 Total: 19.28 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.35 -10.79 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562390541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.984 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds