Wall clock time and date at job start Fri Apr 10 2020 20:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 120.00419 * 2 1 4 4 C 1.52999 * 109.47123 * 95.85242 * 3 2 1 5 5 H 1.08999 * 110.33764 * 63.70063 * 4 3 2 6 6 C 1.54902 * 110.37239 * 185.96013 * 4 3 2 7 7 C 1.55270 * 101.59766 * 155.81635 * 6 4 3 8 8 C 1.54317 * 103.08436 * 324.48496 * 7 6 4 9 9 N 1.47447 * 107.23176 * 22.20721 * 8 7 6 10 10 C 1.46906 * 110.99888 * 123.25820 * 9 8 7 11 11 C 1.34782 * 119.99617 * 179.97438 * 2 1 3 12 12 O 1.21585 * 119.99978 * 184.89701 * 11 2 1 13 13 N 1.34781 * 119.99803 * 4.90057 * 11 2 1 14 14 C 1.46499 * 119.99595 * 175.05669 * 13 11 2 15 15 C 1.53001 * 109.46845 * 184.88062 * 14 13 11 16 16 C 1.50693 * 115.55030 * 304.59131 * 15 14 13 17 17 H 1.08006 * 119.99857 * 144.24725 * 16 15 14 18 18 C 1.37876 * 120.00291 * 324.24923 * 16 15 14 19 19 N 1.31517 * 119.99714 * 3.29322 * 18 16 15 20 20 Si 1.86796 * 120.00287 * 183.29651 * 18 16 15 21 21 H 1.48497 * 109.47305 * 59.99890 * 20 18 16 22 22 H 1.48497 * 109.47223 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47015 * 300.00047 * 20 18 16 24 24 C 1.53001 * 117.49653 * 158.92294 * 15 14 13 25 25 C 1.53001 * 117.49589 * 90.26592 * 15 14 13 26 26 H 1.08997 * 109.47487 * 234.88233 * 1 2 3 27 27 H 1.08996 * 109.47005 * 114.87426 * 1 2 3 28 28 H 1.09009 * 109.46551 * 354.88143 * 1 2 3 29 29 H 1.08996 * 109.47086 * 215.85354 * 3 2 1 30 30 H 1.08998 * 109.46741 * 335.84992 * 3 2 1 31 31 H 1.08998 * 110.99118 * 273.98759 * 6 4 3 32 32 H 1.08999 * 110.99459 * 37.80557 * 6 4 3 33 33 H 1.09001 * 110.74138 * 206.04982 * 7 6 4 34 34 H 1.08997 * 110.75835 * 82.93079 * 7 6 4 35 35 H 1.09002 * 109.89312 * 262.80367 * 8 7 6 36 36 H 1.08998 * 109.88780 * 141.60936 * 8 7 6 37 37 H 1.08996 * 109.46976 * 304.33237 * 10 9 8 38 38 H 1.09001 * 109.47134 * 64.33178 * 10 9 8 39 39 H 1.08999 * 109.46922 * 184.33222 * 10 9 8 40 40 H 0.96997 * 120.00219 * 355.05699 * 13 11 2 41 41 H 1.09004 * 109.47412 * 304.88030 * 14 13 11 42 42 H 1.08998 * 109.47619 * 64.87953 * 14 13 11 43 43 H 0.97002 * 119.99822 * 185.00050 * 19 18 16 44 44 H 1.08997 * 117.50116 * 359.97438 * 24 15 14 45 45 H 1.08996 * 117.49972 * 145.02154 * 24 15 14 46 46 H 1.09002 * 117.49572 * 214.97505 * 25 15 14 47 47 H 1.08995 * 117.50324 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5800 1.6368 1.4350 5 1 3.2639 0.8947 1.8470 6 6 3.2233 3.0453 1.4772 7 6 2.9464 3.4711 2.9445 8 6 1.5614 2.8542 3.2318 9 7 1.3704 1.7461 2.2781 10 6 1.1042 0.4849 2.9828 11 6 2.1389 -1.1673 0.0005 12 8 3.3514 -1.1693 0.0904 13 7 1.4685 -2.3324 -0.0987 14 6 2.2050 -3.5941 -0.2072 15 6 1.2188 -4.7429 -0.4280 16 6 0.1310 -4.8734 0.6067 17 1 -0.8591 -5.1893 0.3124 18 6 0.3994 -4.5896 1.9289 19 7 1.5862 -4.1429 2.2777 20 14 -0.9224 -4.8395 3.2249 21 1 -1.3365 -6.2655 3.2410 22 1 -0.3860 -4.4642 4.5578 23 1 -2.0958 -3.9869 2.9061 24 6 1.7627 -6.0317 -1.0476 25 6 0.8670 -5.1041 -1.8725 26 1 -0.3634 -0.5911 0.8406 27 1 -0.3633 -0.4322 -0.9323 28 1 -0.3633 1.0237 0.0917 29 1 3.1006 1.1668 -0.6019 30 1 1.5672 2.0522 -0.4204 31 1 4.2940 2.9916 1.2798 32 1 2.7320 3.7202 0.7763 33 1 2.9101 4.5570 3.0310 34 1 3.6993 3.0574 3.6154 35 1 0.7841 3.6048 3.0885 36 1 1.5293 2.4742 4.2529 37 1 1.9109 0.2856 3.6882 38 1 0.1604 0.5626 3.5227 39 1 1.0436 -0.3291 2.2605 40 1 0.4986 -2.3354 -0.0982 41 1 2.8951 -3.5408 -1.0493 42 1 2.7655 -3.7679 0.7113 43 1 1.7990 -4.0122 3.2150 44 1 2.8231 -6.0611 -1.2984 45 1 1.3335 -6.9740 -0.7072 46 1 -0.1512 -5.4366 -2.0744 47 1 1.3378 -4.5232 -2.6655 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565825949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:21:17 Heat of formation + Delta-G solvation = 10.969102 kcal Electronic energy + Delta-G solvation = -25755.172674 eV Core-core repulsion = 22360.162163 eV Total energy + Delta-G solvation = -3395.010511 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.75597 -38.47879 -36.72393 -34.69640 -32.98388 -32.16404 -31.96357 -30.11912 -26.61527 -26.22339 -25.50380 -25.08510 -23.58166 -21.21144 -21.09321 -20.26853 -19.20524 -18.77374 -17.25057 -16.37177 -16.06347 -15.56878 -15.41724 -14.83188 -14.47933 -14.01442 -13.88307 -13.67461 -13.29151 -13.10599 -12.90864 -12.60163 -12.50704 -12.39674 -12.09465 -11.73635 -11.57433 -11.37471 -11.26464 -11.08665 -11.06610 -11.00269 -10.84803 -10.72947 -10.63033 -10.49830 -10.22583 -9.66657 -9.18944 -8.92908 -8.82032 -8.38946 -8.25957 -7.98532 -7.54735 -5.96149 -4.17537 3.22051 3.29744 3.31233 3.43907 4.08959 4.16573 4.30251 4.65269 4.70501 4.86215 4.95883 5.12612 5.31824 5.45569 5.49653 5.53513 5.61691 5.65600 5.68490 5.73868 5.76991 5.82870 5.89476 5.98723 6.02275 6.06695 6.13568 6.16304 6.28703 6.35571 6.39506 6.59531 6.66048 6.78505 6.90872 7.01451 7.12073 7.19921 7.25400 7.29581 7.62238 7.75814 7.87559 8.05451 8.35246 8.79052 9.04420 9.45515 9.59604 10.91125 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.005213 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.680985 B = 5370.233875 C = 6341.704022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.635 5.635 3 C 0.160 3.840 4 C 0.052 3.948 5 H 0.065 0.935 6 C -0.122 4.122 7 C -0.141 4.141 8 C 0.041 3.959 9 N -0.523 5.523 10 C 0.020 3.980 11 C 0.698 3.302 12 O -0.610 6.610 13 N -0.700 5.700 14 C 0.181 3.819 15 C 0.038 3.962 16 C -0.496 4.496 17 H 0.059 0.941 18 C 0.076 3.924 19 N -0.863 5.863 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.199 4.199 25 C -0.212 4.212 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.021 0.979 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.395 0.605 41 H 0.016 0.984 42 H 0.112 0.888 43 H 0.261 0.739 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 13.651 -0.739 13.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.373 5.373 3 C 0.036 3.964 4 C -0.057 4.057 5 H 0.083 0.917 6 C -0.160 4.160 7 C -0.179 4.179 8 C -0.087 4.087 9 N -0.247 5.247 10 C -0.128 4.128 11 C 0.399 3.601 12 O -0.490 6.490 13 N -0.351 5.351 14 C 0.057 3.943 15 C 0.037 3.963 16 C -0.533 4.533 17 H 0.077 0.923 18 C -0.129 4.129 19 N -0.499 5.499 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.237 4.237 25 C -0.249 4.249 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.230 0.770 41 H 0.034 0.966 42 H 0.129 0.871 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.643 13.808 -0.832 13.848 hybrid contribution -0.568 -0.555 1.396 1.606 sum -1.210 13.254 0.565 13.321 Atomic orbital electron populations 1.21612 0.80222 1.02775 1.00698 1.46890 1.06024 1.04688 1.79724 1.21135 0.96616 0.84256 0.94431 1.23096 0.90624 0.96485 0.95514 0.91688 1.22700 1.00764 0.96064 0.96518 1.22769 0.97405 1.00786 0.96973 1.22833 0.96473 0.94327 0.95097 1.63458 1.36238 1.04560 1.20458 1.22639 0.99598 0.92244 0.98353 1.15960 0.85257 0.80470 0.78369 1.90814 1.12400 1.86472 1.59352 1.44921 1.09871 1.04579 1.75720 1.20952 0.92448 0.79847 1.01020 1.19235 0.96208 0.91456 0.89390 1.20458 0.95454 1.46256 0.91156 0.92270 1.24983 0.95608 0.93832 0.98458 1.69886 1.20111 1.43027 1.16899 0.86691 0.81915 0.78775 0.80836 1.20260 1.21307 1.20144 1.22934 0.96674 0.96807 1.07316 1.22933 0.99058 1.06161 0.96765 0.92484 0.93471 0.90531 0.90612 0.90768 0.90821 0.90675 0.91035 0.91747 0.90861 0.93139 0.96038 0.92152 0.89816 0.77003 0.96589 0.87065 0.92789 0.91510 0.90277 0.90741 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.30 8.24 59.85 0.49 1.79 16 2 N -0.64 -10.75 1.73 -187.35 -0.32 -11.07 16 3 C 0.16 2.34 5.03 -4.04 -0.02 2.32 16 4 C 0.05 0.75 2.75 -66.19 -0.18 0.57 16 5 H 0.07 1.18 7.77 -51.93 -0.40 0.77 16 6 C -0.12 -1.34 6.51 -24.52 -0.16 -1.50 16 7 C -0.14 -1.44 6.94 -24.84 -0.17 -1.62 16 8 C 0.04 0.47 6.90 -2.83 -0.02 0.45 16 9 N -0.52 -7.24 4.75 -231.60 -1.10 -8.34 16 10 C 0.02 0.32 8.60 60.07 0.52 0.84 16 11 C 0.70 14.99 7.60 -86.91 -0.66 14.33 16 12 O -0.61 -15.18 16.05 5.29 0.08 -15.09 16 13 N -0.70 -15.43 5.17 -65.22 -0.34 -15.76 16 14 C 0.18 4.39 4.61 -4.04 -0.02 4.37 16 15 C 0.04 0.90 2.05 -155.66 -0.32 0.58 16 16 C -0.50 -12.52 8.34 -34.44 -0.29 -12.81 16 17 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 18 C 0.08 1.91 5.35 -17.82 -0.10 1.82 16 19 N -0.86 -22.82 10.22 55.43 0.57 -22.25 16 20 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 C -0.20 -4.39 9.96 -26.69 -0.27 -4.65 16 25 C -0.21 -4.47 9.93 -26.69 -0.27 -4.73 16 26 H 0.06 0.89 6.91 -51.93 -0.36 0.53 16 27 H 0.05 0.64 8.06 -51.93 -0.42 0.22 16 28 H 0.08 0.94 7.76 -51.92 -0.40 0.54 16 29 H 0.08 1.18 7.68 -51.93 -0.40 0.78 16 30 H 0.07 0.90 7.81 -51.93 -0.41 0.50 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.73 8.03 -51.93 -0.42 0.32 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.59 7.57 -51.93 -0.39 0.19 16 37 H 0.02 0.36 8.11 -51.93 -0.42 -0.07 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.56 4.63 -51.93 -0.24 1.32 16 40 H 0.40 8.42 6.34 -40.82 -0.26 8.17 16 41 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 42 H 0.11 3.07 5.84 -51.93 -0.30 2.77 16 43 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 46 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 47 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -28.21 365.59 -10.27 -38.48 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -8.19 Total: 11.83 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -1.46 Total: 1.76 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -1.19 Total: -57.42 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.08 Total: -15.09 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.21 -10.27 -38.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565825949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.448 kcal (2) G-P(sol) polarization free energy of solvation -28.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds