Wall clock time and date at job start Fri Apr 10 2020 20:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 120.00419 * 2 1 4 4 C 1.52999 * 109.47123 * 95.85242 * 3 2 1 5 5 H 1.08999 * 110.33764 * 63.70063 * 4 3 2 6 6 C 1.54902 * 110.37239 * 185.96013 * 4 3 2 7 7 C 1.55270 * 101.59766 * 155.81635 * 6 4 3 8 8 C 1.54317 * 103.08436 * 324.48496 * 7 6 4 9 9 N 1.47447 * 107.23176 * 22.20721 * 8 7 6 10 10 C 1.46906 * 110.99888 * 123.25820 * 9 8 7 11 11 C 1.34782 * 119.99617 * 179.97438 * 2 1 3 12 12 O 1.21585 * 119.99978 * 184.89701 * 11 2 1 13 13 N 1.34781 * 119.99803 * 4.90057 * 11 2 1 14 14 C 1.46499 * 119.99595 * 175.05669 * 13 11 2 15 15 C 1.53001 * 109.46845 * 184.88062 * 14 13 11 16 16 C 1.50693 * 115.55030 * 304.59131 * 15 14 13 17 17 H 1.08006 * 119.99857 * 144.24725 * 16 15 14 18 18 C 1.37876 * 120.00291 * 324.24923 * 16 15 14 19 19 N 1.31517 * 119.99714 * 3.29322 * 18 16 15 20 20 Si 1.86796 * 120.00287 * 183.29651 * 18 16 15 21 21 H 1.48497 * 109.47305 * 59.99890 * 20 18 16 22 22 H 1.48497 * 109.47223 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47015 * 300.00047 * 20 18 16 24 24 C 1.53001 * 117.49653 * 158.92294 * 15 14 13 25 25 C 1.53001 * 117.49589 * 90.26592 * 15 14 13 26 26 H 1.08997 * 109.47487 * 234.88233 * 1 2 3 27 27 H 1.08996 * 109.47005 * 114.87426 * 1 2 3 28 28 H 1.09009 * 109.46551 * 354.88143 * 1 2 3 29 29 H 1.08996 * 109.47086 * 215.85354 * 3 2 1 30 30 H 1.08998 * 109.46741 * 335.84992 * 3 2 1 31 31 H 1.08998 * 110.99118 * 273.98759 * 6 4 3 32 32 H 1.08999 * 110.99459 * 37.80557 * 6 4 3 33 33 H 1.09001 * 110.74138 * 206.04982 * 7 6 4 34 34 H 1.08997 * 110.75835 * 82.93079 * 7 6 4 35 35 H 1.09002 * 109.89312 * 262.80367 * 8 7 6 36 36 H 1.08998 * 109.88780 * 141.60936 * 8 7 6 37 37 H 1.08996 * 109.46976 * 304.33237 * 10 9 8 38 38 H 1.09001 * 109.47134 * 64.33178 * 10 9 8 39 39 H 1.08999 * 109.46922 * 184.33222 * 10 9 8 40 40 H 0.96997 * 120.00219 * 355.05699 * 13 11 2 41 41 H 1.09004 * 109.47412 * 304.88030 * 14 13 11 42 42 H 1.08998 * 109.47619 * 64.87953 * 14 13 11 43 43 H 0.97002 * 119.99822 * 185.00050 * 19 18 16 44 44 H 1.08997 * 117.50116 * 359.97438 * 24 15 14 45 45 H 1.08996 * 117.49972 * 145.02154 * 24 15 14 46 46 H 1.09002 * 117.49572 * 214.97505 * 25 15 14 47 47 H 1.08995 * 117.50324 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5800 1.6368 1.4350 5 1 3.2639 0.8947 1.8470 6 6 3.2233 3.0453 1.4772 7 6 2.9464 3.4711 2.9445 8 6 1.5614 2.8542 3.2318 9 7 1.3704 1.7461 2.2781 10 6 1.1042 0.4849 2.9828 11 6 2.1389 -1.1673 0.0005 12 8 3.3514 -1.1693 0.0904 13 7 1.4685 -2.3324 -0.0987 14 6 2.2050 -3.5941 -0.2072 15 6 1.2188 -4.7429 -0.4280 16 6 0.1310 -4.8734 0.6067 17 1 -0.8591 -5.1893 0.3124 18 6 0.3994 -4.5896 1.9289 19 7 1.5862 -4.1429 2.2777 20 14 -0.9224 -4.8395 3.2249 21 1 -1.3365 -6.2655 3.2410 22 1 -0.3860 -4.4642 4.5578 23 1 -2.0958 -3.9869 2.9061 24 6 1.7627 -6.0317 -1.0476 25 6 0.8670 -5.1041 -1.8725 26 1 -0.3634 -0.5911 0.8406 27 1 -0.3633 -0.4322 -0.9323 28 1 -0.3633 1.0237 0.0917 29 1 3.1006 1.1668 -0.6019 30 1 1.5672 2.0522 -0.4204 31 1 4.2940 2.9916 1.2798 32 1 2.7320 3.7202 0.7763 33 1 2.9101 4.5570 3.0310 34 1 3.6993 3.0574 3.6154 35 1 0.7841 3.6048 3.0885 36 1 1.5293 2.4742 4.2529 37 1 1.9109 0.2856 3.6882 38 1 0.1604 0.5626 3.5227 39 1 1.0436 -0.3291 2.2605 40 1 0.4986 -2.3354 -0.0982 41 1 2.8951 -3.5408 -1.0493 42 1 2.7655 -3.7679 0.7113 43 1 1.7990 -4.0122 3.2150 44 1 2.8231 -6.0611 -1.2984 45 1 1.3335 -6.9740 -0.7072 46 1 -0.1512 -5.4366 -2.0744 47 1 1.3378 -4.5232 -2.6655 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565825949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:21:17 Heat of formation + Delta-G solvation = -5.511515 kcal Electronic energy + Delta-G solvation = -25755.887327 eV Core-core repulsion = 22360.162163 eV Total energy + Delta-G solvation = -3395.725164 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.19796 -39.79163 -38.49360 -36.19404 -34.72569 -34.09760 -33.04366 -31.27539 -27.96672 -27.76959 -27.30990 -26.39532 -24.98001 -22.95200 -22.01422 -21.49631 -21.08006 -20.35293 -18.85316 -17.95750 -17.36976 -17.05771 -16.76681 -16.63220 -15.88782 -15.68030 -15.13945 -15.08128 -14.82179 -14.49897 -14.26555 -14.08841 -13.93949 -13.59660 -13.51848 -13.27664 -13.21882 -12.89452 -12.64833 -12.61221 -12.38412 -12.29648 -12.11290 -12.03443 -12.02928 -12.00704 -11.56153 -11.50177 -11.00233 -10.80844 -10.66216 -10.14087 -9.82991 -9.43369 -9.08275 -7.90408 -6.17587 1.42928 1.46002 1.51919 1.98119 2.41314 2.45301 3.00297 3.04002 3.41707 3.69010 3.72031 3.78792 4.05710 4.21375 4.29512 4.36132 4.38927 4.40453 4.49462 4.55707 4.64251 4.65034 4.70014 4.79275 4.82862 4.87000 4.87866 4.92782 4.96909 4.98028 5.05485 5.07511 5.14001 5.16194 5.31242 5.35234 5.54447 5.62275 5.77341 5.97071 6.02985 6.03651 6.10684 6.25934 6.40767 6.83781 7.35804 7.47441 7.89644 8.93781 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.005213 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.680985 B = 5370.233875 C = 6341.704022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.626 5.626 3 C 0.157 3.843 4 C 0.053 3.947 5 H 0.016 0.984 6 C -0.114 4.114 7 C -0.135 4.135 8 C 0.037 3.963 9 N -0.516 5.516 10 C 0.029 3.971 11 C 0.694 3.306 12 O -0.651 6.651 13 N -0.698 5.698 14 C 0.195 3.805 15 C 0.010 3.990 16 C -0.502 4.502 17 H 0.059 0.941 18 C 0.038 3.962 19 N -0.886 5.886 20 Si 0.945 3.055 21 H -0.276 1.276 22 H -0.295 1.295 23 H -0.265 1.265 24 C -0.199 4.199 25 C -0.186 4.186 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.001 0.999 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.399 0.601 41 H 0.008 0.992 42 H 0.074 0.926 43 H 0.254 0.746 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 15.716 -1.393 16.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.362 5.362 3 C 0.034 3.966 4 C -0.057 4.057 5 H 0.034 0.966 6 C -0.152 4.152 7 C -0.174 4.174 8 C -0.091 4.091 9 N -0.241 5.241 10 C -0.120 4.120 11 C 0.395 3.605 12 O -0.535 6.535 13 N -0.349 5.349 14 C 0.070 3.930 15 C 0.009 3.991 16 C -0.540 4.540 17 H 0.077 0.923 18 C -0.164 4.164 19 N -0.523 5.523 20 Si 0.771 3.229 21 H -0.202 1.202 22 H -0.221 1.221 23 H -0.190 1.190 24 C -0.238 4.238 25 C -0.223 4.223 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.064 0.936 37 H 0.020 0.980 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.234 0.766 41 H 0.026 0.974 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.517 15.906 -1.498 16.173 hybrid contribution 0.013 -1.184 1.588 1.981 sum -2.504 14.722 0.090 14.933 Atomic orbital electron populations 1.21745 0.78262 1.04452 1.00641 1.46922 1.07226 1.03972 1.78115 1.21365 0.96730 0.83850 0.94705 1.23009 0.90213 0.97460 0.95047 0.96605 1.22703 1.00874 0.93919 0.97743 1.22766 0.96176 1.02397 0.96026 1.22969 0.98030 0.93771 0.94319 1.63503 1.35727 1.04024 1.20803 1.22479 0.99573 0.92630 0.97269 1.16171 0.84857 0.81438 0.78052 1.90775 1.14384 1.87236 1.61130 1.44765 1.09796 1.04307 1.76034 1.20578 0.92495 0.81232 0.98694 1.19264 0.96573 0.92122 0.91102 1.20638 0.95698 1.45933 0.91685 0.92317 1.25561 0.97005 0.93739 1.00061 1.70086 1.21670 1.44130 1.16432 0.85823 0.80075 0.78633 0.78350 1.20189 1.22091 1.18973 1.22957 0.97438 0.96184 1.07213 1.22918 0.99450 1.04646 0.95266 0.93951 0.92355 0.87643 0.91916 0.87068 0.90633 0.88241 0.88129 0.92762 0.88682 0.93553 0.98029 0.90747 0.92797 0.76589 0.97385 0.90796 0.93647 0.90841 0.90305 0.89638 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.48 8.24 127.77 1.05 3.54 16 2 N -0.63 -21.02 1.73 -864.90 -1.50 -22.52 16 3 C 0.16 4.42 5.03 86.38 0.43 4.86 16 4 C 0.05 1.49 2.75 45.38 0.12 1.61 16 5 H 0.02 0.60 7.77 -2.39 -0.02 0.58 16 6 C -0.11 -2.26 6.51 32.02 0.21 -2.05 16 7 C -0.14 -2.44 6.94 31.82 0.22 -2.22 16 8 C 0.04 0.76 6.90 86.64 0.60 1.35 16 9 N -0.52 -13.65 4.75 -886.64 -4.21 -17.86 16 10 C 0.03 0.95 8.60 127.69 1.10 2.05 16 11 C 0.69 30.69 7.60 179.05 1.36 32.05 16 12 O -0.65 -34.02 16.05 -3.98 -0.06 -34.09 16 13 N -0.70 -31.52 5.17 -478.52 -2.47 -34.00 16 14 C 0.19 9.73 4.61 86.38 0.40 10.13 16 15 C 0.01 0.48 2.05 -52.93 -0.11 0.37 16 16 C -0.50 -25.31 8.34 25.60 0.21 -25.10 16 17 H 0.06 2.91 7.82 -2.91 -0.02 2.89 16 18 C 0.04 1.95 5.35 84.65 0.45 2.40 16 19 N -0.89 -48.47 10.22 21.45 0.22 -48.25 16 20 Si 0.94 41.16 29.54 68.60 2.03 43.18 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 23 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 24 C -0.20 -8.68 9.96 30.62 0.30 -8.38 16 25 C -0.19 -7.54 9.93 30.62 0.30 -7.24 16 26 H 0.04 1.29 6.91 -2.39 -0.02 1.27 16 27 H 0.06 1.47 8.06 -2.39 -0.02 1.45 16 28 H 0.10 2.25 7.76 -2.38 -0.02 2.23 16 29 H 0.06 1.94 7.68 -2.39 -0.02 1.92 16 30 H 0.11 2.33 7.81 -2.39 -0.02 2.31 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.10 1.53 8.03 -2.39 -0.02 1.51 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.01 7.57 -2.39 -0.02 0.99 16 37 H 0.00 0.04 8.11 -2.39 -0.02 0.02 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 2.07 4.63 -2.39 -0.01 2.06 16 40 H 0.40 17.17 6.34 -92.71 -0.59 16.59 16 41 H 0.01 0.40 8.10 -2.39 -0.02 0.38 16 42 H 0.07 4.30 5.84 -2.39 -0.01 4.28 16 43 H 0.25 13.81 8.32 -92.71 -0.77 13.04 16 44 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 46 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 47 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -63.29 365.59 1.02 -62.27 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: 0.35 Total: 37.87 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 6.66 Total: 13.39 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -7.96 Total: -122.63 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.06 Total: -34.09 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -63.29 1.02 -62.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565825949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.760 kcal (2) G-P(sol) polarization free energy of solvation -63.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds