Wall clock time and date at job start Fri Apr 10 2020 20:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00042 * 2 1 4 4 C 1.53005 * 109.47343 * 278.23943 * 3 2 1 5 5 H 1.09004 * 109.87895 * 50.14962 * 4 3 2 6 6 C 1.54322 * 109.88707 * 289.12236 * 4 3 2 7 7 C 1.55393 * 102.89889 * 218.40901 * 6 4 3 8 8 C 1.54903 * 101.74380 * 35.47680 * 7 6 4 9 9 N 1.47432 * 109.89246 * 171.18436 * 4 3 2 10 10 C 1.46908 * 110.99933 * 356.14221 * 9 4 3 11 11 C 1.34770 * 120.00093 * 180.02562 * 2 1 3 12 12 O 1.21591 * 120.00532 * 175.24379 * 11 2 1 13 13 N 1.34782 * 119.99695 * 355.24843 * 11 2 1 14 14 C 1.46506 * 119.99573 * 184.92621 * 13 11 2 15 15 C 1.52999 * 109.46987 * 175.17403 * 14 13 11 16 16 C 1.50700 * 115.55156 * 281.63054 * 15 14 13 17 17 H 1.07997 * 119.99926 * 144.00936 * 16 15 14 18 18 C 1.37874 * 119.99764 * 324.00340 * 16 15 14 19 19 N 1.31516 * 120.00357 * 341.33039 * 18 16 15 20 20 Si 1.86805 * 119.99905 * 161.33145 * 18 16 15 21 21 H 1.48507 * 109.47004 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47163 * 119.99772 * 20 18 16 23 23 H 1.48497 * 109.47145 * 240.00180 * 20 18 16 24 24 C 1.52999 * 117.49892 * 135.91497 * 15 14 13 25 25 C 1.52992 * 60.00533 * 252.51338 * 24 15 14 26 26 H 1.09000 * 109.47270 * 269.52140 * 1 2 3 27 27 H 1.08999 * 109.47227 * 29.52468 * 1 2 3 28 28 H 1.09002 * 109.47475 * 149.52071 * 1 2 3 29 29 H 1.09000 * 109.46812 * 38.23402 * 3 2 1 30 30 H 1.08992 * 109.47146 * 158.23731 * 3 2 1 31 31 H 1.09002 * 110.70254 * 336.69228 * 6 4 3 32 32 H 1.08991 * 110.70754 * 99.92498 * 6 4 3 33 33 H 1.09006 * 110.87054 * 277.39097 * 7 6 4 34 34 H 1.08999 * 111.06158 * 153.65127 * 7 6 4 35 35 H 1.09006 * 110.37558 * 204.19510 * 8 7 6 36 36 H 1.08998 * 110.47013 * 81.90222 * 8 7 6 37 37 H 1.09000 * 109.46622 * 58.72610 * 10 9 4 38 38 H 1.09002 * 109.47167 * 178.71787 * 10 9 4 39 39 H 1.08994 * 109.47442 * 298.72694 * 10 9 4 40 40 H 0.96988 * 120.00346 * 4.92775 * 13 11 2 41 41 H 1.09001 * 109.47452 * 295.17472 * 14 13 11 42 42 H 1.08999 * 109.47169 * 55.17994 * 14 13 11 43 43 H 0.96996 * 120.00077 * 185.01679 * 19 18 16 44 44 H 1.09006 * 117.49795 * 0.02562 * 24 15 14 45 45 H 1.09001 * 117.49679 * 145.02284 * 24 15 14 46 46 H 1.09000 * 117.50059 * 252.51614 * 25 24 15 47 47 H 1.09005 * 117.49986 * 107.48462 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2735 1.8138 -1.4276 5 1 1.2806 1.8147 -1.8774 6 6 3.2310 0.9456 -2.2708 7 6 3.9627 1.9938 -3.1543 8 6 4.0798 3.1964 -2.1849 9 7 2.8188 3.1835 -1.4133 10 6 3.0390 3.6481 -0.0371 11 6 2.1389 -1.1671 -0.0005 12 8 3.3517 -1.1690 -0.0878 13 7 1.4684 -2.3324 0.0956 14 6 2.2047 -3.5943 0.2039 15 6 1.2181 -4.7436 0.4196 16 6 0.6835 -4.8868 1.8213 17 1 -0.3381 -5.1989 1.9803 18 6 1.4987 -4.6196 2.9006 19 7 2.8050 -4.6014 2.7496 20 14 0.7477 -4.2834 4.5777 21 1 -0.7322 -4.3628 4.4823 22 1 1.2354 -5.2942 5.5501 23 1 1.1427 -2.9266 5.0339 24 6 1.4384 -6.0247 -0.3874 25 6 0.2762 -5.0922 -0.7348 26 1 -0.3634 -0.0086 1.0276 27 1 -0.3634 0.8942 -0.5064 28 1 -0.3634 -0.8856 -0.5213 29 1 1.6801 1.9870 0.6360 30 1 3.2057 1.1062 0.3810 31 1 3.9395 0.4201 -1.6304 32 1 2.6714 0.2418 -2.8869 33 1 3.3629 2.2527 -4.0269 34 1 4.9478 1.6353 -3.4527 35 1 4.1728 4.1272 -2.7445 36 1 4.9334 3.0678 -1.5194 37 1 3.7287 2.9722 0.4685 38 1 3.4628 4.6522 -0.0560 39 1 2.0892 3.6645 0.4972 40 1 0.4985 -2.3355 0.0932 41 1 2.7679 -3.7663 -0.7134 42 1 2.8923 -3.5426 1.0480 43 1 3.3809 -4.4858 3.5214 44 1 2.2865 -6.0488 -1.0717 45 1 1.1968 -6.9715 0.0956 46 1 -0.7299 -5.4255 -0.4803 47 1 0.3596 -4.5027 -1.6478 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565825951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:21:20 Heat of formation + Delta-G solvation = 17.094636 kcal Electronic energy + Delta-G solvation = -25257.709342 eV Core-core repulsion = 21862.964454 eV Total energy + Delta-G solvation = -3394.744887 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.12230 -38.78982 -36.81034 -34.98069 -33.16510 -32.25800 -32.19768 -30.12952 -26.72551 -26.33053 -25.68294 -25.45582 -23.97968 -21.30465 -21.19314 -19.95025 -19.28642 -18.99432 -17.82057 -16.43172 -16.16652 -15.93226 -15.34125 -14.98741 -14.77612 -14.40357 -14.01156 -13.72371 -13.50563 -13.32895 -12.97645 -12.85441 -12.69898 -12.43913 -12.27138 -11.90239 -11.69186 -11.51988 -11.41994 -11.40504 -11.09156 -11.00179 -10.80730 -10.75276 -10.62232 -10.50910 -10.31527 -9.63625 -9.29118 -9.24587 -8.81738 -8.68249 -8.30002 -8.11367 -7.74931 -6.12319 -4.13862 3.11891 3.21360 3.31871 3.34058 3.82767 3.97299 4.30752 4.59516 4.66337 4.68363 4.87575 4.97409 5.14140 5.23888 5.24649 5.25014 5.41976 5.45540 5.49225 5.52502 5.62924 5.72221 5.81579 5.82158 5.85839 5.95430 5.99897 6.03163 6.21384 6.31084 6.41704 6.54092 6.60179 6.66643 6.69474 6.90416 6.91264 6.96742 7.05542 7.27343 7.43227 7.56182 7.66250 8.00460 8.34796 8.67385 8.82689 9.30245 9.44311 10.88417 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.019406 B = 0.004218 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.537257 B = 6637.357859 C = 7273.960701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.638 5.638 3 C 0.119 3.881 4 C 0.056 3.944 5 H 0.083 0.917 6 C -0.135 4.135 7 C -0.131 4.131 8 C 0.041 3.959 9 N -0.527 5.527 10 C 0.010 3.990 11 C 0.701 3.299 12 O -0.597 6.597 13 N -0.720 5.720 14 C 0.159 3.841 15 C 0.041 3.959 16 C -0.498 4.498 17 H 0.063 0.937 18 C 0.076 3.924 19 N -0.865 5.865 20 Si 0.888 3.112 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.282 1.282 24 C -0.193 4.193 25 C -0.211 4.211 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.391 0.609 41 H 0.026 0.974 42 H 0.122 0.878 43 H 0.264 0.736 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.091 14.178 -7.452 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.377 5.377 3 C -0.005 4.005 4 C -0.053 4.053 5 H 0.101 0.899 6 C -0.174 4.174 7 C -0.169 4.169 8 C -0.087 4.087 9 N -0.251 5.251 10 C -0.138 4.138 11 C 0.402 3.598 12 O -0.476 6.476 13 N -0.373 5.373 14 C 0.037 3.963 15 C 0.040 3.960 16 C -0.535 4.535 17 H 0.081 0.919 18 C -0.128 4.128 19 N -0.501 5.501 20 Si 0.715 3.285 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.231 4.231 25 C -0.249 4.249 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.225 0.775 41 H 0.044 0.956 42 H 0.139 0.861 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.374 14.567 -7.600 16.488 hybrid contribution -0.407 -0.490 1.236 1.391 sum -1.781 14.078 -6.364 15.552 Atomic orbital electron populations 1.21649 0.80294 1.02516 1.01674 1.46938 1.05970 1.04849 1.79966 1.21954 0.98381 0.84171 0.96032 1.22861 0.99324 0.86863 0.96256 0.89921 1.22947 0.98826 0.97251 0.98335 1.22741 1.00794 0.95251 0.98071 1.23057 0.90864 0.98939 0.95808 1.63783 1.26046 1.22222 1.13074 1.22614 1.01327 1.00143 0.89739 1.15940 0.85340 0.80368 0.78135 1.90826 1.12007 1.86133 1.58627 1.45349 1.09745 1.05434 1.76810 1.21207 0.94375 0.79338 1.01430 1.19177 0.94558 0.91435 0.90864 1.20484 0.97906 1.46808 0.88268 0.91933 1.24954 0.94557 0.94265 0.99043 1.69802 1.02794 1.47075 1.30445 0.86610 0.79727 0.78207 0.83940 1.19585 1.20996 1.20810 1.22930 0.98282 0.96878 1.05051 1.22877 0.95098 1.06264 1.00652 0.92808 0.91379 0.91404 0.90695 0.89545 0.89165 0.91438 0.91147 0.90981 0.90464 0.93492 0.94659 0.91646 0.90969 0.77495 0.95567 0.86090 0.92521 0.91557 0.90164 0.90581 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.13 59.85 0.61 1.61 16 2 N -0.64 -10.01 2.80 -187.35 -0.52 -10.53 16 3 C 0.12 1.65 3.62 -4.04 -0.01 1.64 16 4 C 0.06 0.72 3.62 -66.73 -0.24 0.47 16 5 H 0.08 1.04 7.88 -51.93 -0.41 0.64 16 6 C -0.14 -1.88 5.89 -24.77 -0.15 -2.02 16 7 C -0.13 -1.46 7.08 -24.46 -0.17 -1.64 16 8 C 0.04 0.44 6.73 -2.30 -0.02 0.42 16 9 N -0.53 -6.09 5.44 -231.56 -1.26 -7.35 16 10 C 0.01 0.10 8.22 60.07 0.49 0.60 16 11 C 0.70 14.19 7.95 -86.92 -0.69 13.50 16 12 O -0.60 -14.02 14.02 5.29 0.07 -13.94 16 13 N -0.72 -14.91 5.40 -65.22 -0.35 -15.26 16 14 C 0.16 3.81 5.31 -4.04 -0.02 3.79 16 15 C 0.04 0.96 1.73 -155.66 -0.27 0.69 16 16 C -0.50 -12.91 9.00 -34.44 -0.31 -13.22 16 17 H 0.06 1.62 7.88 -52.49 -0.41 1.20 16 18 C 0.08 2.01 5.11 -17.82 -0.09 1.92 16 19 N -0.87 -23.95 10.95 55.43 0.61 -23.35 16 20 Si 0.89 20.46 29.58 -169.99 -5.03 15.43 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.19 -4.28 9.88 -26.74 -0.26 -4.55 16 25 C -0.21 -4.33 9.92 -26.73 -0.27 -4.60 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.66 7.81 -51.93 -0.41 0.25 16 28 H 0.07 0.81 6.52 -51.93 -0.34 0.47 16 29 H 0.07 0.89 6.04 -51.93 -0.31 0.57 16 30 H 0.09 1.40 6.14 -51.93 -0.32 1.08 16 31 H 0.09 1.53 6.03 -51.93 -0.31 1.22 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.51 7.80 -51.93 -0.40 0.10 16 37 H 0.03 0.38 6.67 -51.93 -0.35 0.04 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.67 6.64 -51.93 -0.34 0.32 16 40 H 0.39 7.31 6.27 -40.82 -0.26 7.06 16 41 H 0.03 0.63 7.97 -51.93 -0.41 0.22 16 42 H 0.12 3.36 5.32 -51.93 -0.28 3.08 16 43 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 44 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 45 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 46 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 47 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -29.48 362.37 -10.34 -39.82 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -7.91 Total: 11.11 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.40 Total: -1.38 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -1.53 Total: -56.49 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.07 Total: -13.94 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.48 -10.34 -39.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565825951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.913 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds