Wall clock time and date at job start Fri Apr 10 2020 20:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47442 * 2 1 4 4 C 1.52999 * 109.47311 * 119.99465 * 2 1 3 5 5 N 1.46905 * 109.47264 * 295.00218 * 4 2 1 6 6 C 1.46898 * 111.00090 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47316 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47107 * 54.99703 * 7 6 5 9 9 C 1.47200 * 109.46684 * 295.00538 * 7 6 5 10 10 N 5.62778 * 104.18580 * 62.69443 * 2 1 3 11 11 C 1.52993 * 109.47479 * 174.99992 * 7 6 5 12 12 C 1.50704 * 109.47224 * 184.99792 * 11 7 6 13 13 H 1.08001 * 119.99675 * 359.97438 * 12 11 7 14 14 C 1.37877 * 119.99820 * 180.02562 * 12 11 7 15 15 N 1.31512 * 120.00424 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99749 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47090 * 59.99855 * 16 14 12 18 18 H 1.48503 * 109.46869 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47057 * 299.99629 * 16 14 12 20 20 C 1.53002 * 109.47490 * 239.99338 * 2 1 3 21 21 N 1.46908 * 109.46707 * 64.99796 * 20 2 1 22 22 C 1.47024 * 110.99261 * 46.32476 * 21 20 2 23 23 C 1.53103 * 109.24985 * 182.34870 * 22 21 20 24 24 O 1.43012 * 109.29295 * 303.21723 * 23 22 21 25 25 C 1.43011 * 113.74271 * 58.65008 * 24 23 22 26 26 C 1.47018 * 110.99661 * 170.00016 * 21 20 2 27 27 H 1.08998 * 109.46979 * 300.00300 * 1 2 3 28 28 H 1.08993 * 109.46790 * 60.00318 * 1 2 3 29 29 H 1.09000 * 109.46943 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46992 * 54.99795 * 4 2 1 31 31 H 1.09001 * 109.47963 * 174.99971 * 4 2 1 32 32 H 1.00892 * 110.99439 * 303.95169 * 5 4 2 33 33 H 1.09000 * 109.47030 * 299.99949 * 6 5 4 34 34 H 1.09004 * 109.47234 * 60.00017 * 6 5 4 35 35 H 1.08997 * 109.47024 * 305.00137 * 11 7 6 36 36 H 1.09005 * 109.47169 * 65.00199 * 11 7 6 37 37 H 0.96996 * 120.00280 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.46906 * 305.00311 * 20 2 1 39 39 H 1.08999 * 109.47302 * 184.99810 * 20 2 1 40 40 H 1.08998 * 109.47369 * 62.43595 * 22 21 20 41 41 H 1.08998 * 109.54483 * 302.29802 * 22 21 20 42 42 H 1.09002 * 109.50635 * 183.25881 * 23 22 21 43 43 H 1.09003 * 109.50698 * 63.17493 * 23 22 21 44 44 H 1.08997 * 109.50806 * 61.26171 * 25 24 23 45 45 H 1.08997 * 109.50924 * 181.35636 * 25 24 23 46 46 H 1.08994 * 109.50209 * 57.67478 * 26 21 20 47 47 H 1.09003 * 109.54070 * 297.56443 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6514 0.0376 2.4457 6 6 2.1248 -0.6268 3.6673 7 6 1.7014 0.1907 4.8893 8 1 0.6224 0.3437 4.8680 9 6 2.3824 1.4954 4.8666 10 7 2.9092 2.5029 4.8482 11 6 2.0846 -0.5627 6.1646 12 6 1.5595 0.1820 7.3650 13 1 1.0080 1.1010 7.2315 14 6 1.7840 -0.3093 8.6335 15 7 2.4560 -1.4280 8.7960 16 14 1.1325 0.6134 10.1213 17 1 -0.3464 0.7147 10.0324 18 1 1.5046 -0.1178 11.3592 19 1 1.7210 1.9765 10.1552 20 6 2.0401 -0.7214 -1.2491 21 7 1.6514 0.0372 -2.4457 22 6 1.9365 1.4696 -2.2768 23 6 1.4635 2.2284 -3.5196 24 8 2.1000 1.6816 -4.6777 25 6 1.8423 0.2885 -4.8726 26 6 2.3201 -0.4902 -3.6441 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6054 -1.7197 1.2953 31 1 3.1264 -0.7994 1.2057 32 1 1.9882 0.9874 2.3966 33 1 1.6904 -1.6246 3.7298 34 1 3.2117 -0.7047 3.6406 35 1 1.6520 -1.5628 6.1396 36 1 3.1701 -0.6378 6.2300 37 1 2.6137 -1.7738 9.6884 38 1 1.6054 -1.7199 -1.2950 39 1 3.1264 -0.7995 -1.2055 40 1 3.0092 1.6140 -2.1485 41 1 1.4105 1.8451 -1.3991 42 1 1.7249 3.2823 -3.4241 43 1 0.3824 2.1289 -3.6173 44 1 0.7723 0.1319 -5.0093 45 1 2.3771 -0.0605 -5.7560 46 1 2.0740 -1.5453 -3.7634 47 1 3.3991 -0.3777 -3.5388 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567160885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:21:22 Heat of formation + Delta-G solvation = -29.690006 kcal Electronic energy + Delta-G solvation = -23483.348912 eV Core-core repulsion = 20086.575290 eV Total energy + Delta-G solvation = -3396.773622 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.06659 -37.99730 -36.90530 -35.31473 -33.89489 -32.85454 -31.56342 -30.96772 -28.25081 -27.03838 -25.55448 -24.45032 -23.89840 -22.41152 -21.82347 -21.00594 -19.82614 -17.04638 -16.75100 -16.59310 -16.40586 -15.76248 -15.51859 -15.44904 -15.29222 -14.85907 -14.58202 -14.29782 -13.99020 -13.40824 -13.20641 -12.86718 -12.67658 -12.58460 -12.43642 -12.11631 -12.05853 -11.85477 -11.79400 -11.71517 -11.30868 -11.16318 -11.04105 -10.96041 -10.87521 -10.72332 -10.60968 -10.53044 -10.26874 -9.99891 -9.55470 -9.25481 -8.71152 -8.46560 -8.33980 -6.10666 -4.13972 3.30503 3.34647 3.35077 3.38345 3.53122 3.54765 3.59478 4.17648 4.40416 4.51784 4.56979 4.64510 4.77544 4.78137 4.78727 4.88115 4.96347 5.03977 5.16275 5.25953 5.27235 5.30724 5.35884 5.41708 5.48640 5.53097 5.54641 5.61695 5.68126 5.72383 5.83998 6.07885 6.13316 6.16765 6.34737 6.37961 6.52667 6.60359 6.61732 6.78012 7.07794 7.39326 7.42653 7.51368 7.84075 8.21733 8.37662 8.90340 9.51490 11.00169 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.037721 B = 0.002267 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.119974 B =12350.109924 C =12668.845571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 H 0.071 0.929 4 C 0.064 3.936 5 N -0.688 5.688 6 C 0.068 3.932 7 C 0.007 3.993 8 H 0.111 0.889 9 C 0.241 3.759 10 N -0.478 5.478 11 C 0.033 3.967 12 C -0.527 4.527 13 H 0.056 0.944 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.060 3.940 21 N -0.531 5.531 22 C 0.009 3.991 23 C 0.063 3.937 24 O -0.388 6.388 25 C 0.064 3.936 26 C 0.017 3.983 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.026 0.974 32 H 0.336 0.664 33 H 0.091 0.909 34 H 0.033 0.967 35 H 0.040 0.960 36 H 0.024 0.976 37 H 0.263 0.737 38 H 0.080 0.920 39 H 0.033 0.967 40 H 0.041 0.959 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 -0.898 -25.854 25.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.066 4.066 5 N -0.319 5.319 6 C -0.062 4.062 7 C -0.015 4.015 8 H 0.129 0.871 9 C -0.075 4.075 10 N -0.155 5.155 11 C -0.006 4.006 12 C -0.565 4.565 13 H 0.074 0.926 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.720 3.280 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.068 4.068 21 N -0.257 5.257 22 C -0.119 4.119 23 C -0.014 4.014 24 O -0.307 6.307 25 C -0.013 4.013 26 C -0.111 4.111 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.154 0.846 33 H 0.110 0.890 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.104 0.896 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.664 0.263 -25.903 26.041 hybrid contribution 1.271 0.112 1.344 1.854 sum -1.393 0.375 -24.559 24.601 Atomic orbital electron populations 1.21636 0.93371 1.01963 1.01806 1.21309 0.98076 0.99364 0.92588 0.91127 1.21950 0.97198 0.98120 0.89360 1.60536 1.64179 1.05662 1.01508 1.22073 0.97881 0.98561 0.87682 1.19333 0.99770 0.84759 0.97627 0.87099 1.29384 0.92632 0.94477 0.91030 1.81079 1.10926 1.12643 1.10833 1.19158 0.97745 0.95563 0.88137 1.21108 1.35723 1.08761 0.90933 0.92551 1.24956 0.94982 0.94949 0.99102 1.69923 1.40046 1.20239 1.22842 0.86646 0.79521 0.79945 0.81921 1.19985 1.21191 1.20279 1.22196 0.97868 0.97849 0.88846 1.62250 1.57876 1.02589 1.02955 1.22937 0.99993 0.89050 0.99878 1.22694 0.97291 0.97389 0.84001 1.87983 1.73445 1.23667 1.45559 1.22648 1.00814 0.81091 0.96739 1.22790 0.97023 1.00118 0.91217 0.91597 0.92736 0.93057 0.90532 0.95623 0.84616 0.89037 0.94831 0.94196 0.95808 0.92730 0.90159 0.94865 0.94089 0.88520 0.88494 0.92181 0.92226 0.88580 0.89595 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 8.77 37.16 0.33 -0.91 16 2 C -0.09 -0.86 2.01 -90.62 -0.18 -1.04 16 3 H 0.07 0.68 5.95 -51.93 -0.31 0.37 16 4 C 0.06 0.66 5.07 -3.82 -0.02 0.64 16 5 N -0.69 -8.65 5.95 -113.77 -0.68 -9.33 16 6 C 0.07 0.98 5.12 -3.83 -0.02 0.96 16 7 C 0.01 0.13 2.42 -93.41 -0.23 -0.10 16 8 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 9 C 0.24 4.83 12.98 -20.73 -0.27 4.56 16 10 N -0.48 -10.33 18.54 42.19 0.78 -9.55 16 11 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 12 C -0.53 -14.00 8.60 -34.44 -0.30 -14.29 16 13 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 16 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.06 0.51 4.67 -3.82 -0.02 0.49 16 21 N -0.53 -4.47 4.34 -234.28 -1.02 -5.49 16 22 C 0.01 0.08 4.79 -3.70 -0.02 0.06 16 23 C 0.06 0.51 7.01 37.21 0.26 0.77 16 24 O -0.39 -3.71 10.83 -35.23 -0.38 -4.09 16 25 C 0.06 0.46 7.01 37.21 0.26 0.73 16 26 C 0.02 0.13 5.63 -3.71 -0.02 0.10 16 27 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 28 H 0.05 0.51 7.31 -51.93 -0.38 0.13 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.34 4.44 7.81 -39.30 -0.31 4.13 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.03 0.29 8.08 -51.93 -0.42 -0.13 16 40 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 0.79 5.49 -51.93 -0.29 0.51 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -29.81 376.32 -8.75 -38.56 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.40 Total: -1.49 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.44 Total: -5.80 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.17 Total: -49.13 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.38 Total: -4.09 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.81 -8.75 -38.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567160885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.870 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds