Wall clock time and date at job start Fri Apr 10 2020 20:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47284 * 2 1 4 4 C 1.52997 * 109.46853 * 240.00223 * 2 1 3 5 5 C 1.50704 * 109.47203 * 175.99774 * 4 2 1 6 6 H 1.07999 * 119.99651 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00148 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00167 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99835 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47111 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47296 * 119.99886 * 9 7 5 12 12 H 1.48502 * 109.46896 * 240.00195 * 9 7 5 13 13 N 1.46895 * 109.47158 * 120.00253 * 2 1 3 14 14 C 1.46846 * 110.99978 * 289.38890 * 13 2 1 15 15 C 1.53035 * 109.52730 * 185.83775 * 14 13 2 16 16 C 1.53114 * 109.27804 * 300.82439 * 15 14 13 17 17 N 1.46504 * 109.52363 * 177.55834 * 16 15 14 18 18 C 1.46377 * 119.33406 * 120.12703 * 17 16 15 19 19 C 1.53239 * 109.15567 * 150.91692 * 18 17 16 20 20 C 1.53245 * 108.56135 * 55.48009 * 19 18 17 21 21 N 1.46376 * 109.15332 * 304.51799 * 20 19 18 22 22 C 1.34134 * 121.33991 * 29.31626 * 21 20 19 23 23 O 1.21583 * 118.69867 * 179.14998 * 22 21 20 24 24 C 1.53124 * 109.21670 * 57.61746 * 16 15 14 25 25 C 1.46850 * 111.00234 * 53.59814 * 13 2 1 26 26 H 1.08999 * 109.47343 * 300.00181 * 1 2 3 27 27 H 1.08998 * 109.47188 * 59.99990 * 1 2 3 28 28 H 1.09005 * 109.47144 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47060 * 295.99383 * 4 2 1 30 30 H 1.09001 * 109.47897 * 55.99665 * 4 2 1 31 31 H 0.97007 * 119.99860 * 180.02562 * 8 7 5 32 32 H 1.09007 * 109.46474 * 65.82105 * 14 13 2 33 33 H 1.09004 * 109.45550 * 305.85492 * 14 13 2 34 34 H 1.09000 * 109.50715 * 180.87949 * 15 14 13 35 35 H 1.09005 * 109.49965 * 60.75837 * 15 14 13 36 36 H 1.09001 * 109.52338 * 297.68024 * 16 15 14 37 37 H 1.09003 * 109.52648 * 31.01118 * 18 17 16 38 38 H 1.09007 * 109.51929 * 270.81986 * 18 17 16 39 39 H 1.09000 * 109.62386 * 295.75794 * 19 18 17 40 40 H 1.09001 * 109.77680 * 175.29012 * 19 18 17 41 41 H 1.09006 * 109.52293 * 184.61446 * 20 19 18 42 42 H 1.08996 * 109.57790 * 64.45774 * 20 19 18 43 43 H 0.96997 * 119.32840 * 209.03919 * 21 20 19 44 44 H 1.09002 * 109.49802 * 62.31706 * 24 16 15 45 45 H 1.08993 * 109.50255 * 182.43577 * 24 16 15 46 46 H 1.09005 * 109.46345 * 294.17765 * 25 13 2 47 47 H 1.08999 * 109.45809 * 54.15407 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5437 -0.6359 -1.2999 6 1 4.0818 -0.1187 -0.5194 7 6 4.2325 -1.2182 -2.3427 8 7 3.5773 -1.8485 -3.2929 9 14 6.0965 -1.1131 -2.4051 10 1 6.5894 -0.3564 -1.2261 11 1 6.6704 -2.4827 -2.3900 12 1 6.5116 -0.4160 -3.6489 13 7 2.0196 -0.6925 1.1994 14 6 1.7660 0.1034 2.4070 15 6 2.4155 -0.5772 3.6140 16 6 1.8327 -1.9838 3.7754 17 7 2.4926 -2.6618 4.8940 18 6 1.6903 -3.1170 6.0306 19 6 2.3595 -4.3438 6.6593 20 6 3.8012 -3.9778 7.0280 21 7 4.4889 -3.4760 5.8373 22 6 3.8205 -2.8489 4.8579 23 8 4.4421 -2.4377 3.8973 24 6 2.0662 -2.7771 2.4867 25 6 1.4280 -2.0318 1.3122 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.7363 -1.7676 -1.2141 30 1 1.6192 -0.2505 -2.1379 31 1 4.0620 -2.2585 -4.0264 32 1 0.6911 0.1835 2.5702 33 1 2.1892 1.0999 2.2806 34 1 2.2138 0.0057 4.5127 35 1 3.4922 -0.6452 3.4576 36 1 0.7628 -1.9145 3.9717 37 1 0.6905 -3.3831 5.6876 38 1 1.6223 -2.3197 6.7709 39 1 2.3623 -5.1662 5.9438 40 1 1.8165 -4.6410 7.5564 41 1 4.3175 -4.8623 7.4013 42 1 3.7966 -3.2066 7.7982 43 1 5.4480 -3.5959 5.7566 44 1 3.1372 -2.8805 2.3121 45 1 1.6151 -3.7648 2.5805 46 1 0.3548 -1.9418 1.4804 47 1 1.6059 -2.5862 0.3907 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571407702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:21:32 Heat of formation + Delta-G solvation = -20.734305 kcal Electronic energy + Delta-G solvation = -25612.409081 eV Core-core repulsion = 22216.023807 eV Total energy + Delta-G solvation = -3396.385273 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.84938 -38.59475 -36.42400 -35.69546 -33.31887 -32.04529 -30.92631 -30.36577 -28.89101 -27.17411 -25.85031 -24.22640 -23.13438 -22.87683 -22.17685 -20.07219 -18.91856 -18.58225 -17.51319 -16.71160 -16.03438 -15.85195 -15.58357 -14.81994 -14.51929 -14.26909 -14.20610 -13.95899 -13.86819 -13.55702 -13.35563 -13.15583 -12.55116 -12.32089 -12.04442 -11.75613 -11.68038 -11.63609 -11.55867 -11.30355 -11.13133 -10.87408 -10.67068 -10.40114 -10.35340 -10.23528 -10.00341 -9.74046 -9.48069 -9.07650 -9.02459 -8.82111 -8.46762 -8.12902 -7.26305 -5.76315 -3.72555 2.71946 3.30024 3.49320 3.56335 3.65176 3.71471 4.37767 4.49998 4.67043 4.71239 4.75612 4.94831 5.11290 5.16190 5.25287 5.27961 5.36008 5.43420 5.61496 5.68129 5.72829 5.78528 5.84708 5.91262 5.97328 6.05667 6.08056 6.15641 6.17879 6.25866 6.42871 6.55900 6.67973 6.76372 6.82738 6.88367 6.99426 7.10970 7.14763 7.67684 7.83420 7.92219 8.08991 8.18326 8.26531 8.72583 8.74400 9.34151 9.89090 11.35889 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.017022 B = 0.004622 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.579183 B = 6056.269015 C = 7110.132033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.068 0.932 4 C 0.030 3.970 5 C -0.483 4.483 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.907 5.907 9 Si 0.887 3.113 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.505 5.505 14 C 0.061 3.939 15 C -0.131 4.131 16 C 0.171 3.829 17 N -0.622 5.622 18 C 0.113 3.887 19 C -0.153 4.153 20 C 0.112 3.888 21 N -0.745 5.745 22 C 0.704 3.296 23 O -0.570 6.570 24 C -0.132 4.132 25 C 0.064 3.936 26 H 0.038 0.962 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.018 0.982 30 H 0.017 0.983 31 H 0.255 0.745 32 H 0.019 0.981 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.412 0.588 44 H 0.100 0.900 45 H 0.052 0.948 46 H 0.019 0.981 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.559 -4.097 23.503 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.022 4.022 3 H 0.086 0.914 4 C -0.007 4.007 5 C -0.522 4.522 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.549 5.549 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.229 5.229 14 C -0.068 4.068 15 C -0.170 4.170 16 C 0.068 3.932 17 N -0.359 5.359 18 C -0.011 4.011 19 C -0.191 4.191 20 C -0.013 4.013 21 N -0.404 5.404 22 C 0.405 3.595 23 O -0.446 6.446 24 C -0.170 4.170 25 C -0.064 4.064 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.249 0.751 44 H 0.119 0.881 45 H 0.071 0.929 46 H 0.037 0.963 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.889 -3.995 22.811 23.896 hybrid contribution 0.353 -0.119 0.205 0.425 sum -5.537 -4.114 23.016 24.027 Atomic orbital electron populations 1.22523 0.99973 1.01213 1.00486 1.21915 0.89860 0.98330 0.92060 0.91361 1.19197 0.96440 0.95264 0.89762 1.21236 0.91657 1.32818 1.06456 0.91993 1.24979 0.97907 0.95992 0.96017 1.69979 1.34950 1.37690 1.12236 0.86590 0.86722 0.77549 0.77497 1.19672 1.21400 1.21584 1.61974 1.58357 1.01555 1.00996 1.21984 0.96704 0.97355 0.90780 1.22042 1.04485 0.93849 0.96613 1.21031 0.94710 0.92362 0.85104 1.47045 1.05211 1.62215 1.21463 1.21531 0.95323 0.95638 0.88573 1.22191 0.96083 0.98552 1.02312 1.21446 0.93001 0.99111 0.87773 1.45059 1.11500 1.63056 1.20787 1.15535 0.81883 0.79120 0.82929 1.91020 1.66047 1.54794 1.32777 1.22050 1.05079 0.96879 0.93007 1.21989 0.94272 0.91204 0.98956 0.94285 0.92681 0.92904 0.96364 0.96485 0.93561 0.96269 0.91218 0.93010 0.88131 0.90642 0.90214 0.92125 0.90418 0.88902 0.90262 0.92145 0.75068 0.88139 0.92904 0.96311 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 8.44 37.16 0.31 -2.94 16 2 C 0.09 1.84 2.26 -67.72 -0.15 1.69 16 3 H 0.07 1.49 7.97 -51.93 -0.41 1.07 16 4 C 0.03 0.80 4.37 -27.88 -0.12 0.68 16 5 C -0.48 -14.25 8.81 -34.44 -0.30 -14.55 16 6 H 0.06 1.86 7.74 -52.49 -0.41 1.46 16 7 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 8 N -0.91 -28.35 13.29 55.43 0.74 -27.62 16 9 Si 0.89 23.43 29.54 -169.99 -5.02 18.40 16 10 H -0.27 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 12 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 13 N -0.51 -10.29 4.29 -226.69 -0.97 -11.26 16 14 C 0.06 1.03 5.14 -3.84 -0.02 1.01 16 15 C -0.13 -2.09 5.31 -26.65 -0.14 -2.23 16 16 C 0.17 2.46 2.59 -67.81 -0.18 2.29 16 17 N -0.62 -7.90 2.78 -172.00 -0.48 -8.37 16 18 C 0.11 0.92 6.46 -3.99 -0.03 0.90 16 19 C -0.15 -0.95 6.20 -26.48 -0.16 -1.11 16 20 C 0.11 0.74 7.20 -3.98 -0.03 0.71 16 21 N -0.74 -7.99 5.58 -65.53 -0.37 -8.36 16 22 C 0.70 10.46 7.61 -88.05 -0.67 9.79 16 23 O -0.57 -11.30 12.91 5.29 0.07 -11.23 16 24 C -0.13 -2.27 5.32 -26.65 -0.14 -2.41 16 25 C 0.06 1.21 4.53 -3.83 -0.02 1.20 16 26 H 0.04 0.61 6.84 -51.93 -0.36 0.26 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.93 6.46 -51.93 -0.34 0.59 16 29 H 0.02 0.51 6.28 -51.93 -0.33 0.18 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.02 0.30 6.90 -51.92 -0.36 -0.06 16 33 H 0.07 1.18 8.01 -51.93 -0.42 0.76 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 1.98 5.96 -51.93 -0.31 1.67 16 36 H 0.08 0.94 7.76 -51.93 -0.40 0.53 16 37 H 0.08 0.56 7.90 -51.93 -0.41 0.15 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.41 4.10 8.88 -40.82 -0.36 3.73 16 44 H 0.10 2.14 6.03 -51.93 -0.31 1.83 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.02 0.32 6.58 -51.93 -0.34 -0.02 16 47 H 0.09 1.93 6.17 -51.93 -0.32 1.61 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -35.04 350.49 -10.51 -45.55 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -8.01 Total: 1.19 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.75 Total: -3.60 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -1.08 Total: -55.61 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.07 Total: -11.23 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.40 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.04 -10.51 -45.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571407702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.817 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds