Wall clock time and date at job start Fri Apr 10 2020 20:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46901 * 109.46888 * 2 1 4 4 C 1.47476 * 111.00076 * 74.03324 * 3 2 1 5 5 C 1.53514 * 87.93391 * 138.70257 * 4 3 2 6 6 C 1.47487 * 110.99856 * 170.00224 * 3 2 1 7 7 H 1.08990 * 113.47781 * 336.12267 * 6 3 2 8 8 C 1.52999 * 113.47246 * 106.53071 * 6 3 2 9 9 N 1.46500 * 109.47528 * 304.99668 * 8 6 3 10 10 C 1.34773 * 120.00431 * 180.02562 * 9 8 6 11 11 O 1.21593 * 119.99894 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00097 * 179.72742 * 10 9 8 13 13 C 1.46504 * 119.99854 * 180.27545 * 12 10 9 14 14 H 1.08999 * 110.01689 * 326.38943 * 13 12 10 15 15 C 1.54267 * 110.03476 * 87.83058 * 13 12 10 16 16 C 1.54890 * 104.19694 * 95.67154 * 15 13 12 17 17 C 1.54889 * 102.74704 * 37.94272 * 16 15 13 18 18 H 1.08999 * 110.48542 * 80.73273 * 17 16 15 19 19 C 1.50701 * 110.48576 * 203.38082 * 17 16 15 20 20 H 1.07997 * 120.00466 * 114.77833 * 19 17 16 21 21 C 1.37877 * 119.99550 * 294.77323 * 19 17 16 22 22 N 1.31522 * 119.99675 * 180.02562 * 21 19 17 23 23 Si 1.86802 * 120.00340 * 359.97438 * 21 19 17 24 24 H 1.48507 * 109.46589 * 90.00304 * 23 21 19 25 25 H 1.48500 * 109.47314 * 209.99800 * 23 21 19 26 26 H 1.48495 * 109.46932 * 330.00377 * 23 21 19 27 27 C 1.53873 * 110.02829 * 204.99748 * 13 12 10 28 28 H 1.08988 * 109.47671 * 60.00060 * 1 2 3 29 29 H 1.09000 * 109.46830 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46811 * 299.99751 * 1 2 3 31 31 H 1.08998 * 109.47645 * 240.00156 * 2 1 3 32 32 H 1.09001 * 109.47755 * 119.99735 * 2 1 3 33 33 H 1.09004 * 113.47480 * 253.46962 * 4 3 2 34 34 H 1.08992 * 113.47911 * 23.87262 * 4 3 2 35 35 H 1.09001 * 114.17262 * 220.32483 * 5 4 3 36 36 H 1.09003 * 114.17188 * 87.62182 * 5 4 3 37 37 H 1.09009 * 109.47054 * 184.99963 * 8 6 3 38 38 H 1.08998 * 109.47782 * 65.00425 * 8 6 3 39 39 H 0.97000 * 119.99456 * 0.02562 * 9 8 6 40 40 H 0.97000 * 119.99736 * 0.26819 * 12 10 9 41 41 H 1.08995 * 110.48467 * 214.35337 * 15 13 12 42 42 H 1.09006 * 110.48233 * 336.99478 * 15 13 12 43 43 H 1.08999 * 110.75489 * 279.63090 * 16 15 13 44 44 H 1.08995 * 110.75417 * 156.25345 * 16 15 13 45 45 H 0.97000 * 119.99993 * 179.97438 * 22 21 19 46 46 H 1.09001 * 110.03662 * 359.97438 * 27 13 12 47 47 H 1.08996 * 110.03263 * 121.38244 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8386 2.0096 1.3237 5 6 3.2290 2.6383 1.1554 6 6 3.4742 1.4314 0.2390 7 1 3.8559 0.5563 0.7648 8 6 4.2868 1.7711 -1.0120 9 7 3.9533 0.8278 -2.0821 10 6 4.5517 0.9342 -3.2850 11 8 5.3682 1.8134 -3.4822 12 7 4.2489 0.0631 -4.2678 13 6 4.9039 0.1750 -5.5734 14 1 5.0986 1.2223 -5.8046 15 6 6.2252 -0.6213 -5.5719 16 6 5.8432 -1.9921 -6.1836 17 6 4.8283 -1.6031 -7.2870 18 1 5.3494 -1.2629 -8.1819 19 6 3.9280 -2.7678 -7.6098 20 1 2.8709 -2.7084 -7.3972 21 6 4.4542 -3.9091 -8.1768 22 7 3.6684 -4.9254 -8.4591 23 14 6.2826 -4.0116 -8.5454 24 1 6.9946 -4.5679 -7.3669 25 1 6.5023 -4.8950 -9.7188 26 1 6.8042 -2.6536 -8.8435 27 6 4.0157 -0.4492 -6.6639 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.0315 2.7416 1.3517 34 1 1.7827 1.2892 2.1397 35 1 3.8315 2.6388 2.0637 36 1 3.2252 3.5979 0.6383 37 1 5.3506 1.7010 -0.7844 38 1 4.0505 2.7851 -1.3346 39 1 3.3017 0.1267 -1.9249 40 1 3.5973 -0.6381 -4.1105 41 1 6.9718 -0.1225 -6.1898 42 1 6.5935 -0.7471 -4.5537 43 1 5.3745 -2.6316 -5.4357 44 1 6.7171 -2.4787 -6.6167 45 1 4.0385 -5.7283 -8.8583 46 1 3.0975 -0.8359 -6.2217 47 1 3.7793 0.2951 -7.4243 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883673607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:22:08 Heat of formation + Delta-G solvation = -3.919543 kcal Electronic energy + Delta-G solvation = -24269.012971 eV Core-core repulsion = 20873.356840 eV Total energy + Delta-G solvation = -3395.656131 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.84521 -39.64901 -37.42091 -34.44378 -33.55250 -33.12946 -31.98967 -28.89914 -28.30638 -27.68939 -27.12439 -23.78651 -23.28647 -22.25671 -20.99475 -20.20432 -19.57793 -19.30578 -18.07930 -16.97621 -16.69937 -16.13567 -15.60289 -15.39906 -14.90661 -14.77124 -14.43380 -14.23211 -13.79352 -13.74664 -13.36666 -12.82188 -12.72417 -12.51738 -12.39332 -12.30842 -12.17918 -11.70718 -11.49715 -11.35750 -11.13146 -11.08558 -10.89805 -10.83074 -10.52562 -10.16439 -9.90979 -9.86450 -9.68551 -9.42442 -9.29223 -9.04333 -8.99612 -8.53371 -8.44125 -6.07063 -4.05669 2.89382 3.30245 3.39559 3.42137 3.48162 3.56612 4.02377 4.33530 4.43471 4.47168 4.63308 4.74469 4.81140 4.89192 4.92544 5.16223 5.21867 5.26501 5.33900 5.41253 5.45620 5.47165 5.50680 5.65257 5.69335 5.70279 5.75193 5.86836 5.99127 6.17939 6.21058 6.37101 6.47773 6.57983 6.60356 6.60640 6.67643 6.76342 6.90378 7.06625 7.15118 7.26194 7.54299 7.78623 8.28908 8.52493 8.88430 8.96141 9.56449 11.06065 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.021981 B = 0.003167 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.494583 B = 8839.810501 C = 9650.639255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.013 3.987 3 N -0.463 5.463 4 C -0.002 4.002 5 C -0.135 4.135 6 C 0.011 3.989 7 H 0.084 0.916 8 C 0.160 3.840 9 N -0.745 5.745 10 C 0.702 3.298 11 O -0.599 6.599 12 N -0.732 5.732 13 C 0.158 3.842 14 H 0.080 0.920 15 C -0.133 4.133 16 C -0.127 4.127 17 C 0.011 3.989 18 H 0.034 0.966 19 C -0.508 4.508 20 H 0.073 0.927 21 C 0.070 3.930 22 N -0.904 5.904 23 Si 0.881 3.119 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.264 1.264 27 C -0.112 4.112 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.392 0.608 40 H 0.396 0.604 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.263 0.737 46 H 0.068 0.932 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 11.892 20.871 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 N -0.186 5.186 4 C -0.131 4.131 5 C -0.173 4.173 6 C -0.099 4.099 7 H 0.101 0.899 8 C 0.035 3.965 9 N -0.402 5.402 10 C 0.402 3.598 11 O -0.478 6.478 12 N -0.386 5.386 13 C 0.054 3.946 14 H 0.098 0.902 15 C -0.172 4.172 16 C -0.165 4.165 17 C -0.008 4.008 18 H 0.052 0.948 19 C -0.546 4.546 20 H 0.091 0.909 21 C -0.131 4.131 22 N -0.542 5.542 23 Si 0.710 3.290 24 H -0.205 1.205 25 H -0.222 1.222 26 H -0.188 1.188 27 C -0.150 4.150 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.227 0.773 40 H 0.230 0.770 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.258 12.793 19.970 23.824 hybrid contribution 0.626 -1.566 0.667 1.814 sum -1.632 11.227 20.638 23.550 Atomic orbital electron populations 1.21700 0.94223 1.01960 1.02561 1.22700 0.97195 0.90542 1.01134 1.69033 1.06154 1.15527 1.27916 1.23718 0.98647 0.99089 0.91669 1.23180 0.96531 0.98116 0.99483 1.23737 0.90715 0.99231 0.96175 0.89854 1.21068 0.97898 0.93268 0.84266 1.45038 1.47341 1.36099 1.11726 1.16015 0.81211 0.82316 0.80289 1.90885 1.37837 1.37317 1.81785 1.45448 1.46748 1.33630 1.12746 1.21590 0.92462 0.99784 0.80793 0.90211 1.22785 0.96613 0.97531 1.00236 1.22916 0.98968 0.95001 0.99599 1.19990 0.93565 0.93857 0.93430 0.94803 1.21057 0.95588 0.97476 1.40496 0.90920 1.25003 0.97603 0.95633 0.94908 1.69908 1.35349 1.05321 1.43626 0.86891 0.86338 0.78214 0.77594 1.20469 1.22229 1.18846 1.22425 0.98618 0.98070 0.95905 0.91605 0.92017 0.92836 0.90648 0.93964 0.89555 0.91328 0.90259 0.88340 0.91525 0.91192 0.77327 0.77029 0.91813 0.92570 0.91649 0.93688 0.92747 0.91335 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.02 37.15 0.37 -0.69 16 2 C 0.01 0.10 5.30 -3.83 -0.02 0.08 16 3 N -0.46 -3.84 5.98 -236.51 -1.41 -5.26 16 4 C 0.00 -0.02 7.00 -7.55 -0.05 -0.07 16 5 C -0.13 -0.83 8.00 -26.20 -0.21 -1.03 16 6 C 0.01 0.09 3.26 -71.43 -0.23 -0.15 16 7 H 0.08 0.59 7.77 -51.93 -0.40 0.19 16 8 C 0.16 1.71 5.81 -4.04 -0.02 1.68 16 9 N -0.75 -9.20 5.47 -65.22 -0.36 -9.56 16 10 C 0.70 11.37 8.56 -86.92 -0.74 10.62 16 11 O -0.60 -11.88 16.00 5.28 0.08 -11.80 16 12 N -0.73 -11.52 5.03 -57.58 -0.29 -11.81 16 13 C 0.16 2.80 3.25 -66.81 -0.22 2.58 16 14 H 0.08 1.46 7.56 -51.93 -0.39 1.06 16 15 C -0.13 -2.44 6.54 -25.07 -0.16 -2.61 16 16 C -0.13 -2.68 5.30 -24.74 -0.13 -2.81 16 17 C 0.01 0.24 2.28 -90.11 -0.21 0.04 16 18 H 0.03 0.80 7.06 -51.93 -0.37 0.43 16 19 C -0.51 -13.83 9.04 -34.44 -0.31 -14.14 16 20 H 0.07 2.12 7.79 -52.49 -0.41 1.72 16 21 C 0.07 1.98 5.46 -17.82 -0.10 1.89 16 22 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 23 Si 0.88 21.72 24.65 -169.99 -4.19 17.53 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.26 -6.25 6.47 56.52 0.37 -5.88 16 27 C -0.11 -2.14 6.13 -25.61 -0.16 -2.30 16 28 H 0.06 0.55 8.14 -51.94 -0.42 0.12 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 31 H 0.08 0.60 6.33 -51.93 -0.33 0.27 16 32 H 0.04 0.29 7.56 -51.93 -0.39 -0.10 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.37 7.70 -51.93 -0.40 -0.03 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.64 7.94 -51.93 -0.41 0.22 16 37 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.07 0.83 7.88 -51.93 -0.41 0.42 16 39 H 0.39 4.15 6.23 -40.82 -0.25 3.90 16 40 H 0.40 5.58 8.33 -40.82 -0.34 5.24 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 43 H 0.06 1.41 8.05 -51.93 -0.42 0.99 16 44 H 0.04 0.97 5.28 -51.93 -0.27 0.70 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.07 1.31 7.13 -51.93 -0.37 0.94 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -32.27 361.34 -10.26 -42.53 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -8.12 Total: 6.36 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.19 Total: -6.90 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -1.29 Total: -53.17 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.80 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.19 Total: 17.53 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.27 -10.26 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883673607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.614 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds