Wall clock time and date at job start Fri Apr 10 2020 20:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48815 * 111.18201 * 2 1 4 4 C 1.54941 * 103.34432 * 159.50745 * 3 2 1 5 5 C 1.54588 * 102.92269 * 322.68792 * 4 3 2 6 6 H 1.09002 * 110.30985 * 263.03999 * 5 4 3 7 7 C 1.52998 * 110.30944 * 140.87725 * 5 4 3 8 8 C 1.50703 * 109.47476 * 177.83313 * 7 5 4 9 9 O 1.21280 * 119.99826 * 359.97438 * 8 7 5 10 10 N 1.34772 * 120.00064 * 179.97438 * 8 7 5 11 11 C 1.46502 * 119.99774 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.49717 * 35.00246 * 11 10 8 13 13 C 1.53040 * 109.49564 * 155.06661 * 11 10 8 14 14 C 1.53040 * 109.54042 * 181.28616 * 13 11 10 15 15 C 1.53190 * 109.33730 * 298.68249 * 14 13 11 16 16 N 1.46925 * 108.77629 * 54.62136 * 15 14 13 17 17 C 1.36935 * 120.63558 * 126.37248 * 16 15 14 18 18 H 1.07995 * 120.00222 * 207.69353 * 17 16 15 19 19 C 1.38814 * 120.00198 * 27.68612 * 17 16 15 20 20 N 1.31616 * 119.99433 * 17.36526 * 19 17 16 21 21 Si 1.86793 * 120.00171 * 197.36694 * 19 17 16 22 22 H 1.48498 * 109.47285 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47167 * 120.00047 * 21 19 17 24 24 H 1.48503 * 109.47110 * 239.99877 * 21 19 17 25 25 C 1.46929 * 118.73661 * 306.38952 * 16 15 14 26 26 C 1.47898 * 111.00372 * 117.33585 * 2 1 3 27 27 H 1.09004 * 109.47676 * 302.66386 * 1 2 3 28 28 H 1.09004 * 109.47417 * 62.65946 * 1 2 3 29 29 H 1.09002 * 109.47178 * 182.66156 * 1 2 3 30 30 H 1.08992 * 110.51984 * 41.07411 * 3 2 1 31 31 H 1.09007 * 110.83988 * 278.08564 * 3 2 1 32 32 H 1.09000 * 110.72120 * 204.32889 * 4 3 2 33 33 H 1.09002 * 110.72364 * 81.04843 * 4 3 2 34 34 H 1.09003 * 109.47083 * 297.83069 * 7 5 4 35 35 H 1.09004 * 109.47540 * 57.82642 * 7 5 4 36 36 H 0.97003 * 120.00196 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.46270 * 301.33852 * 13 11 10 38 38 H 1.09000 * 109.46578 * 61.29536 * 13 11 10 39 39 H 1.08993 * 109.49787 * 178.71127 * 14 13 11 40 40 H 1.09005 * 109.49799 * 58.64523 * 14 13 11 41 41 H 1.09001 * 109.58888 * 294.82839 * 15 14 13 42 42 H 1.09000 * 109.58545 * 174.40391 * 15 14 13 43 43 H 0.97012 * 119.99911 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58582 * 293.82237 * 25 16 15 45 45 H 1.08996 * 109.70730 * 173.47024 * 25 16 15 46 46 H 1.09003 * 109.91607 * 94.80281 * 26 2 1 47 47 H 1.09005 * 109.91561 * 333.71085 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0066 1.3876 0.0000 4 6 3.4526 1.2108 0.5278 5 6 3.2974 0.1060 1.5979 6 1 3.2097 0.5496 2.5897 7 6 4.4883 -0.8532 1.5475 8 6 4.3445 -1.8900 2.6317 9 8 3.3843 -1.8639 3.3722 10 7 5.2830 -2.8460 2.7786 11 6 5.1435 -3.8536 3.8329 12 1 4.0894 -4.0966 3.9667 13 6 5.9127 -5.1163 3.4378 14 6 5.7412 -6.1809 4.5237 15 6 6.3163 -5.6568 5.8433 16 7 5.6833 -4.3683 6.1563 17 6 5.0782 -4.1641 7.3676 18 1 4.2659 -3.4577 7.4532 19 6 5.5088 -4.8653 8.4856 20 7 6.6856 -5.4547 8.4796 21 14 4.4181 -4.9724 9.9982 22 1 3.1553 -4.2310 9.7514 23 1 4.1077 -6.3961 10.2849 24 1 5.1239 -4.3759 11.1606 25 6 5.7117 -3.3031 5.1447 26 6 1.9990 -0.6340 1.2265 27 1 -0.3634 0.5546 0.8651 28 1 -0.3634 0.4720 -0.9129 29 1 -0.3634 -1.0266 0.0477 30 1 1.4272 2.0219 0.6707 31 1 2.0132 1.8010 -1.0086 32 1 3.8148 2.1353 0.9775 33 1 4.1175 0.8831 -0.2714 34 1 4.5174 -1.3456 0.5755 35 1 5.4117 -0.2943 1.6994 36 1 6.0512 -2.8666 2.1866 37 1 5.5261 -5.4960 2.4920 38 1 6.9705 -4.8776 3.3277 39 1 6.2704 -7.0877 4.2309 40 1 4.6817 -6.4031 4.6513 41 1 7.3931 -5.5205 5.7441 42 1 6.1081 -6.3695 6.6413 43 1 6.9867 -5.9445 9.2611 44 1 6.7393 -2.9748 4.9885 45 1 5.1063 -2.4612 5.4804 46 1 2.2122 -1.6863 1.0382 47 1 1.2743 -0.5412 2.0355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009204607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:35 Heat of formation + Delta-G solvation = -20.374029 kcal Electronic energy + Delta-G solvation = -24534.152908 eV Core-core repulsion = 21137.783257 eV Total energy + Delta-G solvation = -3396.369651 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.02737 -38.74421 -37.24565 -34.26426 -33.45938 -32.37490 -30.45959 -30.20340 -28.75033 -27.08781 -25.26943 -25.07001 -22.22079 -21.99635 -21.38316 -20.49105 -19.84018 -19.18485 -16.81312 -16.75482 -16.35101 -15.79760 -15.38022 -14.92483 -14.70299 -14.35015 -14.09365 -13.71933 -13.56646 -13.26691 -13.22349 -12.98247 -12.69397 -12.40161 -12.33887 -11.96857 -11.84672 -11.62568 -11.58350 -11.33037 -11.08123 -10.91585 -10.84503 -10.76934 -10.74456 -10.23995 -10.19910 -9.90156 -9.88247 -9.59918 -9.38650 -8.77111 -8.61405 -8.37777 -6.65447 -5.76798 -3.18571 2.91958 3.39838 3.42835 3.48042 3.52528 3.87577 4.42774 4.46621 4.54071 4.67879 4.96499 5.07614 5.17313 5.23271 5.27296 5.32690 5.37809 5.40927 5.48442 5.55043 5.57020 5.61886 5.65545 5.66402 5.75217 5.77388 5.83139 6.02890 6.10435 6.12635 6.19717 6.26710 6.55417 6.62956 6.69260 6.71900 6.73434 6.83715 6.86572 7.03495 7.37621 7.66137 7.81861 7.85133 8.46158 8.54727 9.24059 9.86564 10.42201 11.31936 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.021426 B = 0.003239 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.539317 B = 8641.369837 C = 9270.480914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.527 5.527 3 C 0.033 3.967 4 C -0.120 4.120 5 C -0.081 4.081 6 H 0.084 0.916 7 C -0.131 4.131 8 C 0.507 3.493 9 O -0.536 6.536 10 N -0.725 5.725 11 C 0.126 3.874 12 H 0.084 0.916 13 C -0.114 4.114 14 C -0.140 4.140 15 C 0.167 3.833 16 N -0.588 5.588 17 C -0.249 4.249 18 H 0.067 0.933 19 C 0.001 3.999 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.143 3.857 26 C 0.049 3.951 27 H 0.027 0.973 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.394 0.606 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.019 0.981 42 H 0.089 0.911 43 H 0.253 0.747 44 H 0.016 0.984 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.245 9.485 -19.105 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.251 5.251 3 C -0.095 4.095 4 C -0.158 4.158 5 C -0.101 4.101 6 H 0.102 0.898 7 C -0.172 4.172 8 C 0.293 3.707 9 O -0.413 6.413 10 N -0.375 5.375 11 C 0.020 3.980 12 H 0.103 0.897 13 C -0.153 4.153 14 C -0.179 4.179 15 C 0.041 3.959 16 N -0.311 5.311 17 C -0.379 4.379 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.549 5.549 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.016 3.984 26 C -0.078 4.078 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.227 0.773 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.034 0.966 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.739 9.118 -18.865 21.482 hybrid contribution -0.343 0.261 1.253 1.325 sum -5.082 9.379 -17.613 20.591 Atomic orbital electron populations 1.22497 0.88052 1.02115 1.00611 1.64829 1.08011 1.14759 1.37547 1.23279 0.95163 0.90217 1.00845 1.22584 0.96609 0.98398 0.98255 1.21744 0.93733 0.94882 0.99721 0.89770 1.21768 1.00190 0.96476 0.98728 1.20627 0.82642 0.82200 0.85265 1.90726 1.31170 1.73755 1.45631 1.46182 1.25350 1.30525 1.35491 1.21709 1.01364 0.87046 0.87857 0.89748 1.21671 0.99655 0.95526 0.98403 1.22177 1.01522 0.96529 0.97715 1.20842 0.93721 0.88318 0.92978 1.44009 1.65930 1.08386 1.12778 1.19269 1.10372 1.23356 0.84856 0.91551 1.25018 0.95770 1.01593 0.97314 1.70053 1.17087 1.38277 1.29474 0.86220 0.80289 0.77486 0.82830 1.20172 1.21532 1.21738 1.21167 0.97031 0.92069 0.88164 1.22858 0.95601 0.99222 0.90168 0.95401 0.91500 0.91302 0.93809 0.90174 0.90853 0.90469 0.88764 0.88914 0.77302 0.93151 0.92311 0.92763 0.92470 0.96336 0.89266 0.93735 0.96631 0.92511 0.90374 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.41 60.06 0.57 0.71 16 2 N -0.53 -5.62 5.56 -238.47 -1.33 -6.95 16 3 C 0.03 0.29 6.58 -1.74 -0.01 0.28 16 4 C -0.12 -1.00 6.61 -24.87 -0.16 -1.16 16 5 C -0.08 -0.87 2.62 -89.27 -0.23 -1.11 16 6 H 0.08 1.04 8.00 -51.93 -0.42 0.62 16 7 C -0.13 -1.33 4.90 -27.88 -0.14 -1.46 16 8 C 0.51 7.38 7.31 -10.99 -0.08 7.30 16 9 O -0.54 -10.17 14.74 5.56 0.08 -10.09 16 10 N -0.72 -10.16 5.08 -53.69 -0.27 -10.44 16 11 C 0.13 2.26 2.60 -67.81 -0.18 2.09 16 12 H 0.08 1.76 7.58 -51.93 -0.39 1.37 16 13 C -0.11 -1.85 5.36 -26.69 -0.14 -2.00 16 14 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 15 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 16 N -0.59 -15.14 2.99 -172.32 -0.52 -15.65 16 17 C -0.25 -7.09 9.59 -15.06 -0.14 -7.23 16 18 H 0.07 1.91 7.89 -52.49 -0.41 1.50 16 19 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 20 N -0.90 -26.51 11.19 55.49 0.62 -25.89 16 21 Si 0.90 22.24 29.59 -169.99 -5.03 17.22 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.14 3.16 6.09 -3.71 -0.02 3.13 16 26 C 0.05 0.59 5.27 -2.76 -0.01 0.58 16 27 H 0.03 0.26 8.01 -51.93 -0.42 -0.16 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.38 7.97 -51.93 -0.41 -0.03 16 31 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.39 4.20 8.60 -40.82 -0.35 3.85 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 2.39 6.04 -51.93 -0.31 2.07 16 43 H 0.25 7.13 8.31 -40.81 -0.34 6.79 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 1.34 7.94 -51.93 -0.41 0.93 16 46 H 0.08 1.05 7.28 -51.93 -0.38 0.67 16 47 H 0.05 0.68 7.73 -51.93 -0.40 0.27 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -32.29 364.02 -10.31 -42.61 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -8.53 Total: 1.45 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -0.83 Total: 2.25 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -1.49 Total: -58.92 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.29 -10.31 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009204607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.232 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds