Wall clock time and date at job start Fri Apr 10 2020 20:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48815 * 111.18201 * 2 1 4 4 C 1.54941 * 103.34432 * 159.50745 * 3 2 1 5 5 C 1.54588 * 102.92269 * 322.68792 * 4 3 2 6 6 H 1.09002 * 110.30985 * 263.03999 * 5 4 3 7 7 C 1.52998 * 110.30944 * 140.87725 * 5 4 3 8 8 C 1.50703 * 109.47476 * 177.83313 * 7 5 4 9 9 O 1.21280 * 119.99826 * 359.97438 * 8 7 5 10 10 N 1.34772 * 120.00064 * 179.97438 * 8 7 5 11 11 C 1.46502 * 119.99774 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.49717 * 35.00246 * 11 10 8 13 13 C 1.53040 * 109.49564 * 155.06661 * 11 10 8 14 14 C 1.53040 * 109.54042 * 181.28616 * 13 11 10 15 15 C 1.53190 * 109.33730 * 298.68249 * 14 13 11 16 16 N 1.46925 * 108.77629 * 54.62136 * 15 14 13 17 17 C 1.36935 * 120.63558 * 126.37248 * 16 15 14 18 18 H 1.07995 * 120.00222 * 207.69353 * 17 16 15 19 19 C 1.38814 * 120.00198 * 27.68612 * 17 16 15 20 20 N 1.31616 * 119.99433 * 17.36526 * 19 17 16 21 21 Si 1.86793 * 120.00171 * 197.36694 * 19 17 16 22 22 H 1.48498 * 109.47285 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47167 * 120.00047 * 21 19 17 24 24 H 1.48503 * 109.47110 * 239.99877 * 21 19 17 25 25 C 1.46929 * 118.73661 * 306.38952 * 16 15 14 26 26 C 1.47898 * 111.00372 * 117.33585 * 2 1 3 27 27 H 1.09004 * 109.47676 * 302.66386 * 1 2 3 28 28 H 1.09004 * 109.47417 * 62.65946 * 1 2 3 29 29 H 1.09002 * 109.47178 * 182.66156 * 1 2 3 30 30 H 1.08992 * 110.51984 * 41.07411 * 3 2 1 31 31 H 1.09007 * 110.83988 * 278.08564 * 3 2 1 32 32 H 1.09000 * 110.72120 * 204.32889 * 4 3 2 33 33 H 1.09002 * 110.72364 * 81.04843 * 4 3 2 34 34 H 1.09003 * 109.47083 * 297.83069 * 7 5 4 35 35 H 1.09004 * 109.47540 * 57.82642 * 7 5 4 36 36 H 0.97003 * 120.00196 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.46270 * 301.33852 * 13 11 10 38 38 H 1.09000 * 109.46578 * 61.29536 * 13 11 10 39 39 H 1.08993 * 109.49787 * 178.71127 * 14 13 11 40 40 H 1.09005 * 109.49799 * 58.64523 * 14 13 11 41 41 H 1.09001 * 109.58888 * 294.82839 * 15 14 13 42 42 H 1.09000 * 109.58545 * 174.40391 * 15 14 13 43 43 H 0.97012 * 119.99911 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58582 * 293.82237 * 25 16 15 45 45 H 1.08996 * 109.70730 * 173.47024 * 25 16 15 46 46 H 1.09003 * 109.91607 * 94.80281 * 26 2 1 47 47 H 1.09005 * 109.91561 * 333.71085 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0066 1.3876 0.0000 4 6 3.4526 1.2108 0.5278 5 6 3.2974 0.1060 1.5979 6 1 3.2097 0.5496 2.5897 7 6 4.4883 -0.8532 1.5475 8 6 4.3445 -1.8900 2.6317 9 8 3.3843 -1.8639 3.3722 10 7 5.2830 -2.8460 2.7786 11 6 5.1435 -3.8536 3.8329 12 1 4.0894 -4.0966 3.9667 13 6 5.9127 -5.1163 3.4378 14 6 5.7412 -6.1809 4.5237 15 6 6.3163 -5.6568 5.8433 16 7 5.6833 -4.3683 6.1563 17 6 5.0782 -4.1641 7.3676 18 1 4.2659 -3.4577 7.4532 19 6 5.5088 -4.8653 8.4856 20 7 6.6856 -5.4547 8.4796 21 14 4.4181 -4.9724 9.9982 22 1 3.1553 -4.2310 9.7514 23 1 4.1077 -6.3961 10.2849 24 1 5.1239 -4.3759 11.1606 25 6 5.7117 -3.3031 5.1447 26 6 1.9990 -0.6340 1.2265 27 1 -0.3634 0.5546 0.8651 28 1 -0.3634 0.4720 -0.9129 29 1 -0.3634 -1.0266 0.0477 30 1 1.4272 2.0219 0.6707 31 1 2.0132 1.8010 -1.0086 32 1 3.8148 2.1353 0.9775 33 1 4.1175 0.8831 -0.2714 34 1 4.5174 -1.3456 0.5755 35 1 5.4117 -0.2943 1.6994 36 1 6.0512 -2.8666 2.1866 37 1 5.5261 -5.4960 2.4920 38 1 6.9705 -4.8776 3.3277 39 1 6.2704 -7.0877 4.2309 40 1 4.6817 -6.4031 4.6513 41 1 7.3931 -5.5205 5.7441 42 1 6.1081 -6.3695 6.6413 43 1 6.9867 -5.9445 9.2611 44 1 6.7393 -2.9748 4.9885 45 1 5.1063 -2.4612 5.4804 46 1 2.2122 -1.6863 1.0382 47 1 1.2743 -0.5412 2.0355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009204607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:19:35 Heat of formation + Delta-G solvation = -43.497442 kcal Electronic energy + Delta-G solvation = -24535.155614 eV Core-core repulsion = 21137.783257 eV Total energy + Delta-G solvation = -3397.372357 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16426 -39.79663 -38.77769 -35.90314 -34.37049 -34.05054 -32.35407 -31.17491 -30.10467 -28.05978 -27.27340 -25.92624 -23.90367 -23.62165 -22.15943 -21.59183 -21.17490 -20.54734 -18.73644 -17.90838 -17.31145 -17.12952 -16.65716 -16.33816 -16.07955 -15.72406 -15.30838 -15.16881 -14.93330 -14.85691 -14.21076 -14.16021 -14.02859 -13.87587 -13.60117 -13.41986 -13.05381 -12.79060 -12.75119 -12.56279 -12.39130 -12.32374 -12.14935 -12.10302 -11.98585 -11.77520 -11.71467 -11.56627 -11.51315 -11.30600 -10.70829 -10.63151 -10.04687 -9.44998 -8.71316 -7.93001 -5.38271 1.41353 1.43049 1.54753 1.76408 2.24740 2.49685 3.09633 3.20862 3.58733 3.67556 3.72290 3.85860 3.90189 4.09059 4.11996 4.25923 4.35928 4.41524 4.46113 4.47034 4.54700 4.57499 4.61044 4.68964 4.80588 4.83680 4.90501 4.92050 4.93617 4.99893 5.01930 5.08950 5.12271 5.17889 5.22713 5.27504 5.33718 5.48209 5.60801 5.61178 5.74956 5.89411 6.04540 6.34527 6.70508 7.10555 7.41972 7.80623 8.30156 9.12705 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.021426 B = 0.003239 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.539317 B = 8641.369837 C = 9270.480914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.533 5.533 3 C 0.029 3.971 4 C -0.110 4.110 5 C -0.084 4.084 6 H 0.061 0.939 7 C -0.118 4.118 8 C 0.501 3.499 9 O -0.587 6.587 10 N -0.711 5.711 11 C 0.142 3.858 12 H 0.052 0.948 13 C -0.104 4.104 14 C -0.130 4.130 15 C 0.171 3.829 16 N -0.608 5.608 17 C -0.268 4.268 18 H 0.051 0.949 19 C -0.044 4.044 20 N -0.929 5.929 21 Si 0.965 3.035 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.287 1.287 25 C 0.146 3.854 26 C 0.052 3.948 27 H 0.023 0.977 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.416 0.584 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.006 0.994 42 H 0.054 0.946 43 H 0.253 0.747 44 H 0.021 0.979 45 H 0.027 0.973 46 H 0.062 0.938 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 10.068 -21.836 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.258 5.258 3 C -0.098 4.098 4 C -0.148 4.148 5 C -0.103 4.103 6 H 0.079 0.921 7 C -0.157 4.157 8 C 0.289 3.711 9 O -0.467 6.467 10 N -0.364 5.364 11 C 0.035 3.965 12 H 0.070 0.930 13 C -0.142 4.142 14 C -0.170 4.170 15 C 0.046 3.954 16 N -0.332 5.332 17 C -0.398 4.398 18 H 0.069 0.931 19 C -0.240 4.240 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.213 1.213 25 C 0.019 3.981 26 C -0.076 4.076 27 H 0.041 0.959 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.253 0.747 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.024 0.976 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.039 0.961 45 H 0.045 0.955 46 H 0.080 0.920 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -3.905 9.715 -21.656 24.055 hybrid contribution -0.615 0.129 2.108 2.199 sum -4.520 9.844 -19.549 22.349 Atomic orbital electron populations 1.22540 0.87547 1.02000 1.01338 1.64847 1.08660 1.16023 1.36242 1.23400 0.95395 0.89071 1.01925 1.22584 0.96599 0.97923 0.97685 1.21734 0.93332 0.95755 0.99519 0.92094 1.21783 1.01026 0.95109 0.97813 1.21537 0.81573 0.82455 0.85496 1.90719 1.33292 1.74919 1.47797 1.45963 1.26255 1.29546 1.34602 1.21174 0.99378 0.88795 0.87155 0.92995 1.21599 1.00544 0.93336 0.98675 1.22018 1.00688 0.98472 0.95809 1.20725 0.93101 0.86962 0.94626 1.44240 1.66116 1.10025 1.12843 1.19415 1.10406 1.23477 0.86547 0.93108 1.25714 0.96943 1.01428 0.99886 1.70174 1.18276 1.38806 1.30174 0.85251 0.78565 0.77512 0.79388 1.20006 1.20909 1.21322 1.21204 0.96826 0.90647 0.89382 1.22736 0.95981 0.98825 0.90031 0.95862 0.89621 0.91833 0.94130 0.88304 0.89373 0.88673 0.86102 0.85924 0.74682 0.89554 0.90505 0.89731 0.93644 0.97607 0.92759 0.93811 0.96113 0.95469 0.91973 0.96017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.41 127.69 1.20 1.46 16 2 N -0.53 -10.74 5.56 -908.38 -5.05 -15.79 16 3 C 0.03 0.45 6.58 86.60 0.57 1.02 16 4 C -0.11 -1.49 6.61 31.80 0.21 -1.28 16 5 C -0.08 -1.70 2.62 -9.92 -0.03 -1.73 16 6 H 0.06 1.52 8.00 -2.39 -0.02 1.50 16 7 C -0.12 -2.06 4.90 29.85 0.15 -1.91 16 8 C 0.50 14.17 7.31 87.66 0.64 14.81 16 9 O -0.59 -23.09 14.74 -3.03 -0.04 -23.13 16 10 N -0.71 -18.62 5.08 -442.17 -2.25 -20.86 16 11 C 0.14 5.03 2.60 45.07 0.12 5.14 16 12 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 13 C -0.10 -3.07 5.36 30.62 0.16 -2.91 16 14 C -0.13 -4.74 6.08 30.67 0.19 -4.55 16 15 C 0.17 8.29 5.31 86.36 0.46 8.75 16 16 N -0.61 -32.30 2.99 -699.11 -2.09 -34.40 16 17 C -0.27 -15.88 9.59 84.03 0.81 -15.07 16 18 H 0.05 3.09 7.89 -2.91 -0.02 3.06 16 19 C -0.04 -2.55 4.91 84.86 0.42 -2.13 16 20 N -0.93 -55.76 11.19 21.65 0.24 -55.52 16 21 Si 0.97 46.86 29.59 68.60 2.03 48.89 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 C 0.15 6.59 6.09 86.36 0.53 7.11 16 26 C 0.05 1.28 5.27 86.45 0.46 1.73 16 27 H 0.02 0.43 8.01 -2.39 -0.02 0.41 16 28 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.04 0.65 7.97 -2.39 -0.02 0.63 16 31 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 0.99 7.86 -2.39 -0.02 0.98 16 34 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.42 7.33 8.60 -92.71 -0.80 6.53 16 37 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.05 2.99 6.04 -2.39 -0.01 2.98 16 43 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 44 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.03 1.34 7.94 -2.39 -0.02 1.32 16 46 H 0.06 1.68 7.28 -2.39 -0.02 1.67 16 47 H 0.02 0.63 7.73 -2.38 -0.02 0.61 16 Total: -1.00 -74.69 364.02 -1.16 -75.85 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.13 Total: 14.52 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 5.87 Total: 10.44 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -9.15 Total: -126.57 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.04 Total: -23.13 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -74.69 -1.16 -75.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009204607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.353 kcal (2) G-P(sol) polarization free energy of solvation -74.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds