Wall clock time and date at job start Fri Apr 10 2020 20:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.46923 * 2 1 4 4 C 1.42897 * 113.99986 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.85088 * 341.19953 * 4 3 2 6 6 C 1.53783 * 113.61370 * 112.50495 * 4 3 2 7 7 C 1.53784 * 87.07856 * 89.11562 * 6 4 3 8 8 H 1.08995 * 113.61638 * 270.87979 * 7 6 4 9 9 N 1.46902 * 113.61106 * 139.97757 * 7 6 4 10 10 C 1.46902 * 110.99753 * 107.80296 * 9 7 6 11 11 C 1.52996 * 109.47307 * 174.76562 * 10 9 7 12 12 C 1.50703 * 115.55029 * 279.23214 * 11 10 9 13 13 H 1.08000 * 119.99873 * 144.45479 * 12 11 10 14 14 C 1.37871 * 119.99794 * 324.45734 * 12 11 10 15 15 N 1.31522 * 120.00362 * 339.03638 * 14 12 11 16 16 Si 1.86804 * 120.00144 * 159.04096 * 14 12 11 17 17 H 1.48501 * 109.46740 * 59.99663 * 16 14 12 18 18 H 1.48497 * 109.47429 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46992 * 299.99992 * 16 14 12 20 20 C 1.53001 * 117.50175 * 133.52415 * 11 10 9 21 21 C 1.53003 * 117.49852 * 64.89944 * 11 10 9 22 22 C 1.53782 * 113.61315 * 210.00532 * 4 3 2 23 23 C 1.53000 * 113.61567 * 25.43134 * 22 4 3 24 24 C 1.52991 * 109.47163 * 60.29356 * 23 22 4 25 25 C 1.52995 * 113.61402 * 156.33834 * 22 4 3 26 26 C 1.53000 * 109.47045 * 180.98461 * 25 22 4 27 27 H 1.09002 * 109.46885 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47488 * 299.99630 * 1 2 3 29 29 H 1.09002 * 109.47408 * 60.00327 * 1 2 3 30 30 H 1.08999 * 109.47005 * 240.00470 * 2 1 3 31 31 H 1.08995 * 109.47121 * 119.99932 * 2 1 3 32 32 H 1.08999 * 113.60912 * 203.66169 * 6 4 3 33 33 H 1.08995 * 113.61232 * 334.56692 * 6 4 3 34 34 H 1.00894 * 111.00443 * 343.85165 * 9 7 6 35 35 H 1.09003 * 109.47341 * 294.76455 * 10 9 7 36 36 H 1.09001 * 109.47399 * 54.76189 * 10 9 7 37 37 H 0.96996 * 119.99996 * 185.02612 * 15 14 12 38 38 H 1.09001 * 117.49623 * 0.02562 * 20 11 10 39 39 H 1.08996 * 117.50000 * 145.02154 * 20 11 10 40 40 H 1.08992 * 117.49981 * 214.97816 * 21 11 10 41 41 H 1.08993 * 117.49855 * 0.02562 * 21 11 10 42 42 H 1.09004 * 109.46988 * 180.29529 * 23 22 4 43 43 H 1.09004 * 109.46918 * 300.29294 * 23 22 4 44 44 H 1.09003 * 109.47329 * 64.85709 * 24 23 22 45 45 H 1.08997 * 109.47067 * 184.85562 * 24 23 22 46 46 H 1.09005 * 109.47169 * 304.85637 * 24 23 22 47 47 H 1.09002 * 109.47012 * 300.97834 * 25 22 4 48 48 H 1.09004 * 109.47514 * 60.98235 * 25 22 4 49 49 H 1.08996 * 109.47132 * 306.30896 * 26 25 22 50 50 H 1.08997 * 109.47441 * 66.31363 * 26 25 22 51 51 H 1.09003 * 109.46765 * 186.31451 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9277 0.5458 0.3246 6 6 4.0028 2.0463 -1.3010 7 6 3.8394 3.4327 -0.6559 8 1 2.8646 3.8859 -0.8359 9 7 4.9552 4.3467 -0.9349 10 6 4.5513 5.3980 -1.8781 11 6 5.6940 6.4018 -2.0430 12 6 5.8110 7.4381 -0.9551 13 1 6.7848 7.7827 -0.6400 14 6 4.6747 7.9463 -0.3622 15 7 3.5174 7.8661 -0.9819 16 14 4.7789 8.7488 1.3215 17 1 5.7016 9.9107 1.2597 18 1 3.4292 9.2106 1.7341 19 1 5.2888 7.7637 2.3087 20 6 6.0615 6.8265 -3.4662 21 6 6.9903 5.8980 -2.6810 22 6 3.9482 2.7254 0.7053 23 6 2.9867 3.2758 1.7605 24 6 2.7579 2.2189 2.8427 25 6 5.3845 2.5981 1.2167 26 6 5.7924 3.8945 1.9194 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 5.0410 1.7700 -1.4850 33 1 3.3620 1.8902 -2.1688 34 1 5.7587 3.8423 -1.2782 35 1 4.3191 4.9498 -2.8442 36 1 3.6694 5.9112 -1.4944 37 1 2.7321 8.2873 -0.5990 38 1 5.4888 6.3910 -4.2850 39 1 6.3878 7.8556 -3.6159 40 1 7.9275 6.3164 -2.3142 41 1 7.0287 4.8516 -2.9836 42 1 3.4158 4.1706 2.2115 43 1 2.0358 3.5262 1.2903 44 1 3.6928 2.0314 3.3710 45 1 2.0078 2.5772 3.5477 46 1 2.4102 1.2949 2.3805 47 1 5.4473 1.7681 1.9206 48 1 6.0543 2.4137 0.3768 49 1 5.6231 4.7388 1.2511 50 1 5.1963 4.0212 2.8230 51 1 6.8486 3.8472 2.1845 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430748621.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:21:26 Heat of formation + Delta-G solvation = -8.292106 kcal Electronic energy + Delta-G solvation = -26238.270801 eV Core-core repulsion = 22945.965405 eV Total energy + Delta-G solvation = -3292.305396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 295.225 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.32337 -37.12405 -36.44716 -33.47833 -32.08028 -31.98437 -30.80555 -30.35271 -25.75211 -25.23194 -24.73625 -23.44086 -22.82183 -22.01239 -21.11983 -20.71078 -18.89754 -17.93286 -16.48737 -16.03904 -15.78241 -15.42094 -14.80744 -14.56919 -14.14234 -14.04040 -13.93071 -13.29950 -12.99305 -12.73339 -12.57518 -12.50521 -12.38696 -12.31946 -11.90518 -11.68399 -11.56367 -11.48410 -11.18575 -11.14053 -10.85838 -10.79995 -10.74000 -10.51155 -10.43527 -10.35817 -10.14659 -10.12011 -9.90220 -9.68478 -9.12759 -9.05205 -8.96640 -8.60435 -7.89111 -7.22478 -5.97577 -3.90664 3.37315 3.43219 3.49091 3.63111 4.48405 4.77012 4.80114 4.88635 5.01639 5.09557 5.13085 5.18714 5.26796 5.37426 5.45545 5.52703 5.55751 5.70835 5.71932 5.77649 5.80480 5.84061 5.86823 5.99600 6.03769 6.09354 6.20959 6.23944 6.27065 6.33889 6.43068 6.46754 6.54725 6.55841 6.67958 6.68943 6.75169 6.81188 6.83869 6.92945 7.04146 7.17894 7.33133 7.39949 7.42014 7.73508 8.10936 8.19301 8.38338 8.63571 9.00514 9.64612 11.06408 Molecular weight = 295.23amu Principal moments of inertia in cm(-1) A = 0.015191 B = 0.005238 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.741232 B = 5344.497152 C = 5936.757746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.357 6.357 4 C 0.074 3.926 5 H 0.065 0.935 6 C -0.191 4.191 7 C 0.094 3.906 8 H 0.094 0.906 9 N -0.653 5.653 10 C 0.087 3.913 11 C 0.070 3.930 12 C -0.479 4.479 13 H 0.056 0.944 14 C 0.083 3.917 15 N -0.874 5.874 16 Si 0.882 3.118 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.272 1.272 20 C -0.208 4.208 21 C -0.211 4.211 22 C -0.064 4.064 23 C -0.100 4.100 24 C -0.143 4.143 25 C -0.077 4.077 26 C -0.155 4.155 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.324 0.676 35 H -0.012 1.012 36 H 0.123 0.877 37 H 0.261 0.739 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.044 0.956 46 H 0.050 0.950 47 H 0.044 0.956 48 H 0.058 0.942 49 H 0.101 0.899 50 H 0.041 0.959 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 -15.564 3.434 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.276 6.276 4 C 0.015 3.985 5 H 0.083 0.917 6 C -0.231 4.231 7 C -0.017 4.017 8 H 0.113 0.887 9 N -0.281 5.281 10 C -0.041 4.041 11 C 0.069 3.931 12 C -0.515 4.515 13 H 0.075 0.925 14 C -0.120 4.120 15 N -0.511 5.511 16 Si 0.710 3.290 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.197 1.197 20 C -0.247 4.247 21 C -0.249 4.249 22 C -0.065 4.065 23 C -0.137 4.137 24 C -0.200 4.200 25 C -0.114 4.114 26 C -0.212 4.212 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.142 0.858 35 H 0.006 0.994 36 H 0.140 0.860 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.119 0.881 50 H 0.060 0.940 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.209 -14.986 4.041 15.849 hybrid contribution 0.226 -0.421 -0.177 0.509 sum -2.982 -15.406 3.864 16.161 Atomic orbital electron populations 1.21729 0.93982 1.01840 1.03226 1.22457 0.95376 0.84572 0.99541 1.87928 1.19972 1.25248 1.94465 1.23041 0.81029 0.97554 0.96889 0.91708 1.24210 1.00757 1.00388 0.97745 1.22960 0.96020 0.89226 0.93540 0.88749 1.60245 1.05273 1.13323 1.49272 1.21863 1.01571 0.90127 0.90534 1.18885 0.89340 0.94749 0.90083 1.20325 0.92358 1.21600 1.17250 0.92540 1.24806 0.95164 0.95247 0.96815 1.69839 1.00578 1.42999 1.37725 0.86821 0.76938 0.79346 0.85879 1.20670 1.21544 1.19705 1.22997 1.05384 0.98051 0.98277 1.22778 0.96565 0.96554 1.09008 1.22327 0.95366 0.93417 0.95387 1.21296 0.98815 0.98183 0.95447 1.21712 1.00423 0.99458 0.98453 1.21000 0.93419 0.97989 0.99041 1.21884 0.98944 0.99657 1.00719 0.91494 0.91836 0.91863 0.93850 0.93759 0.89745 0.91588 0.85812 0.99402 0.85996 0.92890 0.92202 0.90607 0.90899 0.92103 0.91345 0.91892 0.93496 0.93669 0.93075 0.93717 0.92357 0.88056 0.94023 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 37.16 0.38 -1.01 16 2 C 0.06 0.61 6.37 37.16 0.24 0.85 16 3 O -0.36 -4.94 8.37 -35.23 -0.29 -5.23 16 4 C 0.07 0.99 3.05 -25.92 -0.08 0.91 16 5 H 0.06 0.79 7.83 -51.93 -0.41 0.38 16 6 C -0.19 -2.76 7.18 -25.92 -0.19 -2.95 16 7 C 0.09 1.62 3.53 -66.90 -0.24 1.38 16 8 H 0.09 1.85 7.62 -51.93 -0.40 1.46 16 9 N -0.65 -12.66 4.15 -105.86 -0.44 -13.10 16 10 C 0.09 1.99 5.25 -3.82 -0.02 1.97 16 11 C 0.07 1.71 1.95 -155.66 -0.30 1.41 16 12 C -0.48 -12.91 8.98 -34.44 -0.31 -13.22 16 13 H 0.06 1.55 7.90 -52.49 -0.41 1.13 16 14 C 0.08 2.22 5.05 -17.82 -0.09 2.13 16 15 N -0.87 -24.14 11.07 55.43 0.61 -23.52 16 16 Si 0.88 21.12 29.59 -169.99 -5.03 16.09 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.21 -4.83 9.88 -26.73 -0.26 -5.09 16 21 C -0.21 -4.57 9.59 -26.73 -0.26 -4.83 16 22 C -0.06 -0.96 0.58 -153.70 -0.09 -1.05 16 23 C -0.10 -1.56 4.59 -26.74 -0.12 -1.69 16 24 C -0.14 -1.88 9.58 37.15 0.36 -1.52 16 25 C -0.08 -1.11 4.58 -26.73 -0.12 -1.23 16 26 C -0.15 -2.56 8.92 37.16 0.33 -2.23 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 1.13 7.35 -51.93 -0.38 0.75 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.32 5.92 7.17 -39.30 -0.28 5.64 16 35 H -0.01 -0.28 7.94 -51.93 -0.41 -0.69 16 36 H 0.12 3.18 5.24 -51.93 -0.27 2.90 16 37 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 38 H 0.06 1.32 8.08 -51.93 -0.42 0.90 16 39 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.06 1.19 8.00 -51.93 -0.42 0.78 16 42 H 0.07 1.18 6.18 -51.93 -0.32 0.86 16 43 H 0.06 1.06 7.63 -51.93 -0.40 0.66 16 44 H 0.05 0.59 7.62 -51.93 -0.40 0.19 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.64 6.47 -51.93 -0.34 0.31 16 47 H 0.04 0.58 7.78 -51.93 -0.40 0.18 16 48 H 0.06 0.83 6.68 -51.93 -0.35 0.48 16 49 H 0.10 2.04 6.53 -51.93 -0.34 1.70 16 50 H 0.04 0.66 6.77 -51.93 -0.35 0.31 16 51 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -26.83 386.41 -9.75 -36.58 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -9.65 Total: 9.53 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -0.77 Total: -26.16 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.17 Total: -36.63 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.29 Total: -5.23 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -26.83 -9.75 -36.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430748621.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.293 kcal (2) G-P(sol) polarization free energy of solvation -26.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds