Wall clock time and date at job start Fri Apr 10 2020 20:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47370 * 2 1 4 4 H 1.08998 * 109.47938 * 305.00139 * 3 2 1 5 5 C 1.53090 * 109.47946 * 184.97585 * 3 2 1 6 6 C 1.53198 * 109.15321 * 297.61797 * 5 3 2 7 7 H 1.09000 * 109.54587 * 62.89669 * 6 5 3 8 8 C 1.53003 * 109.61553 * 183.11445 * 6 5 3 9 9 N 1.46906 * 109.47234 * 181.57227 * 8 6 5 10 10 C 1.46848 * 110.99831 * 52.00401 * 9 8 6 11 11 C 1.53041 * 109.52023 * 185.84031 * 10 9 8 12 12 C 1.53117 * 109.27649 * 300.82258 * 11 10 9 13 13 C 1.52998 * 109.52148 * 177.56266 * 12 11 10 14 14 C 1.50700 * 109.47526 * 65.31381 * 13 12 11 15 15 H 1.08001 * 119.99599 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00388 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99635 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99974 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47294 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46954 * 120.00098 * 18 16 14 21 21 H 1.48494 * 109.47034 * 239.99538 * 18 16 14 22 22 C 1.53113 * 109.16521 * 57.65547 * 12 11 10 23 23 C 1.46841 * 110.99770 * 176.21493 * 9 8 6 24 24 C 1.53180 * 109.04236 * 303.02545 * 6 5 3 25 25 C 1.53096 * 109.16319 * 56.97996 * 24 6 5 26 26 O 1.42901 * 109.41343 * 302.39257 * 25 24 6 27 27 H 1.09002 * 109.47200 * 59.99666 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99768 * 1 2 3 29 29 H 1.09001 * 109.47322 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46750 * 120.00622 * 2 1 3 31 31 H 1.09003 * 109.46694 * 239.99961 * 2 1 3 32 32 H 1.09003 * 109.52375 * 57.53540 * 5 3 2 33 33 H 1.09000 * 109.52183 * 177.71959 * 5 3 2 34 34 H 1.09001 * 109.47092 * 301.56976 * 8 6 5 35 35 H 1.09002 * 109.47198 * 61.57290 * 8 6 5 36 36 H 1.09004 * 109.46134 * 305.85433 * 10 9 8 37 37 H 1.08992 * 109.46326 * 65.82637 * 10 9 8 38 38 H 1.09001 * 109.50132 * 180.87800 * 11 10 9 39 39 H 1.09001 * 109.50433 * 60.76034 * 11 10 9 40 40 H 1.09000 * 109.57408 * 297.71617 * 12 11 10 41 41 H 1.09003 * 109.47166 * 185.31613 * 13 12 11 42 42 H 1.09005 * 109.46896 * 305.31453 * 13 12 11 43 43 H 0.97003 * 119.99601 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.50361 * 182.40432 * 22 12 11 45 45 H 1.08997 * 109.50295 * 62.28051 * 22 12 11 46 46 H 1.08999 * 109.46243 * 294.17544 * 23 9 8 47 47 H 1.08997 * 109.46581 * 54.15446 * 23 9 8 48 48 H 1.08997 * 109.52159 * 297.07565 * 24 6 5 49 49 H 1.08997 * 109.57473 * 176.91910 * 24 6 5 50 50 H 1.08997 * 109.48399 * 182.41028 * 25 24 6 51 51 H 1.09003 * 109.48614 * 62.37794 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8417 5 6 3.5658 1.4444 -0.1252 6 6 4.1709 0.7374 1.0918 7 1 3.8498 -0.3042 1.1053 8 6 5.6977 0.8013 1.0163 9 7 6.2750 0.0900 2.1648 10 6 5.7157 -1.2628 2.2812 11 6 6.2275 -1.9190 3.5656 12 6 7.7570 -1.9802 3.5272 13 6 8.2776 -2.5799 4.8350 14 6 7.8310 -4.0152 4.9424 15 1 7.2350 -4.4555 4.1567 16 6 8.1824 -4.7659 6.0442 17 7 8.9077 -4.2295 7.0012 18 14 7.6281 -6.5448 6.1776 19 1 6.8290 -6.9055 4.9791 20 1 8.8182 -7.4289 6.2641 21 1 6.7963 -6.7140 7.3960 22 6 8.3126 -0.5636 3.3569 23 6 7.7404 0.0533 2.0786 24 6 3.6911 1.4381 2.3666 25 6 2.1604 1.4364 2.3953 26 8 1.6626 2.0814 1.2213 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 3.8574 0.9187 -1.0345 33 1 3.9266 2.4722 -0.1660 34 1 6.0357 0.3331 0.0918 35 1 6.0192 1.8427 1.0350 36 1 4.6277 -1.2046 2.3117 37 1 6.0235 -1.8582 1.4217 38 1 5.8246 -2.9288 3.6438 39 1 5.9083 -1.3315 4.4265 40 1 8.0767 -2.6000 2.6896 41 1 9.3667 -2.5364 4.8464 42 1 7.8824 -2.0124 5.6776 43 1 9.1552 -4.7578 7.7762 44 1 9.3995 -0.6051 3.2861 45 1 8.0262 0.0451 4.2145 46 1 8.0387 -0.5483 1.2200 47 1 8.1229 1.0672 1.9621 48 1 4.0544 2.4657 2.3761 49 1 4.0724 0.9089 3.2398 50 1 1.8128 1.9714 3.2791 51 1 1.7985 0.4087 2.4267 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567906310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:21:26 Heat of formation + Delta-G solvation = -79.849964 kcal Electronic energy + Delta-G solvation = -25233.584254 eV Core-core repulsion = 21938.175876 eV Total energy + Delta-G solvation = -3295.408377 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 295.225 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.30510 -38.64127 -35.44765 -33.68417 -33.33437 -31.90731 -30.46804 -30.24875 -28.40755 -26.29897 -24.16544 -23.67177 -23.05711 -22.82982 -21.42200 -20.44109 -19.17522 -18.84304 -16.70099 -16.24449 -16.07593 -15.87289 -15.25017 -14.76953 -14.56231 -14.45532 -13.98056 -13.77914 -13.62995 -13.48098 -13.10496 -12.97340 -12.58190 -12.37539 -12.21340 -12.06513 -11.81114 -11.77287 -11.44621 -11.34203 -11.16715 -11.10788 -10.86857 -10.81120 -10.65808 -10.62743 -10.50922 -10.24166 -10.07680 -9.91034 -9.53191 -9.44541 -9.00795 -8.85120 -8.31996 -8.04358 -5.96702 -3.98017 3.31613 3.39363 3.42758 3.72377 4.05184 4.47928 4.49179 4.56584 4.70283 4.76152 4.90214 4.97906 5.16494 5.21555 5.26206 5.35240 5.36878 5.38595 5.39445 5.47182 5.53362 5.59377 5.60463 5.69427 5.71977 5.76746 5.78676 5.83046 5.90446 5.92029 5.99036 6.03265 6.05107 6.15238 6.21009 6.24080 6.36337 6.46895 6.60057 6.69703 7.00059 7.11565 7.12577 7.21603 7.37418 7.41658 7.72139 7.88819 8.04440 8.47650 9.08873 9.65439 11.14692 Molecular weight = 295.23amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.003276 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.960362 B = 8545.154903 C = 9395.910845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.160 4.160 3 C 0.093 3.907 4 H 0.098 0.902 5 C -0.144 4.144 6 C -0.091 4.091 7 H 0.077 0.923 8 C 0.062 3.938 9 N -0.533 5.533 10 C 0.051 3.949 11 C -0.099 4.099 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.513 4.513 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.111 4.111 23 C 0.060 3.940 24 C -0.140 4.140 25 C 0.054 3.946 26 O -0.377 6.377 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.024 0.976 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.013 0.987 42 H 0.016 0.984 43 H 0.259 0.741 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.026 0.974 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.087 0.913 50 H 0.091 0.909 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.706 12.333 -14.858 23.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.197 4.197 3 C 0.035 3.965 4 H 0.116 0.884 5 C -0.182 4.182 6 C -0.110 4.110 7 H 0.095 0.905 8 C -0.066 4.066 9 N -0.257 5.257 10 C -0.077 4.077 11 C -0.137 4.137 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.551 4.551 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.149 4.149 23 C -0.068 4.068 24 C -0.178 4.178 25 C -0.023 4.023 26 O -0.296 6.296 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.042 0.958 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.035 0.965 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.044 0.956 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.105 0.895 50 H 0.109 0.891 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.857 12.712 -14.259 23.027 hybrid contribution 0.281 -1.767 -0.610 1.891 sum -12.575 10.945 -14.869 22.338 Atomic orbital electron populations 1.21699 0.95249 1.01423 1.02167 1.22206 0.96932 0.97529 1.03051 1.22166 0.93593 0.93104 0.87662 0.88448 1.22223 0.95850 1.01653 0.98499 1.21338 0.94723 1.00066 0.94832 0.90482 1.22107 0.93765 0.98998 0.91752 1.61977 1.05836 1.17549 1.40379 1.22296 0.98923 0.87918 0.98520 1.21542 0.96612 1.00061 0.95468 1.21225 0.94294 0.93625 1.00820 1.19118 0.95963 0.95091 0.90736 1.21294 1.32548 0.96777 1.04530 0.92704 1.25021 0.95350 0.98173 0.95983 1.69979 1.37900 1.36412 1.09274 0.86606 0.78424 0.85454 0.77931 1.19821 1.21121 1.21076 1.21682 0.99080 0.97682 0.96458 1.22084 0.87006 0.99671 0.98007 1.22111 0.95166 1.01666 0.98809 1.22664 0.93922 0.97826 0.87868 1.87958 1.74764 1.53216 1.13689 0.92893 0.92183 0.92892 0.90956 0.91163 0.91217 0.91051 0.95475 0.91096 0.91262 0.95756 0.91064 0.91920 0.93178 0.96827 0.96527 0.93165 0.92247 0.91621 0.95570 0.91781 0.91404 0.89457 0.89112 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.81 37.16 0.36 -0.81 16 2 C -0.16 -1.34 4.74 -26.73 -0.13 -1.47 16 3 C 0.09 0.82 3.29 -26.69 -0.09 0.74 16 4 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 5 C -0.14 -1.27 4.93 -26.58 -0.13 -1.40 16 6 C -0.09 -0.93 1.47 -90.42 -0.13 -1.06 16 7 H 0.08 0.84 4.68 -51.93 -0.24 0.59 16 8 C 0.06 0.71 4.56 -3.82 -0.02 0.69 16 9 N -0.53 -7.46 4.15 -234.66 -0.97 -8.44 16 10 C 0.05 0.76 4.99 -3.83 -0.02 0.74 16 11 C -0.10 -1.84 5.15 -26.65 -0.14 -1.97 16 12 C -0.08 -1.65 2.20 -90.50 -0.20 -1.85 16 13 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 14 C -0.51 -14.31 8.45 -34.44 -0.29 -14.60 16 15 H 0.05 1.49 7.08 -52.49 -0.37 1.12 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 18 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.11 -1.93 5.38 -26.65 -0.14 -2.07 16 23 C 0.06 0.88 5.46 -3.83 -0.02 0.86 16 24 C -0.14 -1.49 5.17 -26.59 -0.14 -1.63 16 25 C 0.05 0.54 6.52 37.21 0.24 0.78 16 26 O -0.38 -4.08 10.13 -35.23 -0.36 -4.44 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.52 7.82 -51.93 -0.41 0.12 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.67 4.98 -51.93 -0.26 0.41 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.94 5.66 -51.93 -0.29 0.65 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 1.41 7.05 -51.93 -0.37 1.05 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.09 1.06 7.62 -51.93 -0.40 0.66 16 50 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.05 0.51 6.23 -51.93 -0.32 0.18 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -29.48 374.56 -10.86 -40.34 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -9.83 Total: -2.49 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -1.06 Total: -20.98 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.24 Total: -34.70 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.36 Total: -4.44 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.48 -10.86 -40.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567906310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.514 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds