Wall clock time and date at job start Fri Apr 10 2020 20:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47370 * 2 1 4 4 H 1.08998 * 109.47938 * 305.00139 * 3 2 1 5 5 C 1.53090 * 109.47946 * 184.97585 * 3 2 1 6 6 C 1.53198 * 109.15321 * 297.61797 * 5 3 2 7 7 H 1.09000 * 109.54587 * 62.89669 * 6 5 3 8 8 C 1.53003 * 109.61553 * 183.11445 * 6 5 3 9 9 N 1.46906 * 109.47234 * 181.57227 * 8 6 5 10 10 C 1.46848 * 110.99831 * 52.00401 * 9 8 6 11 11 C 1.53041 * 109.52023 * 185.84031 * 10 9 8 12 12 C 1.53117 * 109.27649 * 300.82258 * 11 10 9 13 13 C 1.52998 * 109.52148 * 177.56266 * 12 11 10 14 14 C 1.50700 * 109.47526 * 65.31381 * 13 12 11 15 15 H 1.08001 * 119.99599 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00388 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99635 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99974 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47294 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46954 * 120.00098 * 18 16 14 21 21 H 1.48494 * 109.47034 * 239.99538 * 18 16 14 22 22 C 1.53113 * 109.16521 * 57.65547 * 12 11 10 23 23 C 1.46841 * 110.99770 * 176.21493 * 9 8 6 24 24 C 1.53180 * 109.04236 * 303.02545 * 6 5 3 25 25 C 1.53096 * 109.16319 * 56.97996 * 24 6 5 26 26 O 1.42901 * 109.41343 * 302.39257 * 25 24 6 27 27 H 1.09002 * 109.47200 * 59.99666 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99768 * 1 2 3 29 29 H 1.09001 * 109.47322 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46750 * 120.00622 * 2 1 3 31 31 H 1.09003 * 109.46694 * 239.99961 * 2 1 3 32 32 H 1.09003 * 109.52375 * 57.53540 * 5 3 2 33 33 H 1.09000 * 109.52183 * 177.71959 * 5 3 2 34 34 H 1.09001 * 109.47092 * 301.56976 * 8 6 5 35 35 H 1.09002 * 109.47198 * 61.57290 * 8 6 5 36 36 H 1.09004 * 109.46134 * 305.85433 * 10 9 8 37 37 H 1.08992 * 109.46326 * 65.82637 * 10 9 8 38 38 H 1.09001 * 109.50132 * 180.87800 * 11 10 9 39 39 H 1.09001 * 109.50433 * 60.76034 * 11 10 9 40 40 H 1.09000 * 109.57408 * 297.71617 * 12 11 10 41 41 H 1.09003 * 109.47166 * 185.31613 * 13 12 11 42 42 H 1.09005 * 109.46896 * 305.31453 * 13 12 11 43 43 H 0.97003 * 119.99601 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.50361 * 182.40432 * 22 12 11 45 45 H 1.08997 * 109.50295 * 62.28051 * 22 12 11 46 46 H 1.08999 * 109.46243 * 294.17544 * 23 9 8 47 47 H 1.08997 * 109.46581 * 54.15446 * 23 9 8 48 48 H 1.08997 * 109.52159 * 297.07565 * 24 6 5 49 49 H 1.08997 * 109.57473 * 176.91910 * 24 6 5 50 50 H 1.08997 * 109.48399 * 182.41028 * 25 24 6 51 51 H 1.09003 * 109.48614 * 62.37794 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8417 5 6 3.5658 1.4444 -0.1252 6 6 4.1709 0.7374 1.0918 7 1 3.8498 -0.3042 1.1053 8 6 5.6977 0.8013 1.0163 9 7 6.2750 0.0900 2.1648 10 6 5.7157 -1.2628 2.2812 11 6 6.2275 -1.9190 3.5656 12 6 7.7570 -1.9802 3.5272 13 6 8.2776 -2.5799 4.8350 14 6 7.8310 -4.0152 4.9424 15 1 7.2350 -4.4555 4.1567 16 6 8.1824 -4.7659 6.0442 17 7 8.9077 -4.2295 7.0012 18 14 7.6281 -6.5448 6.1776 19 1 6.8290 -6.9055 4.9791 20 1 8.8182 -7.4289 6.2641 21 1 6.7963 -6.7140 7.3960 22 6 8.3126 -0.5636 3.3569 23 6 7.7404 0.0533 2.0786 24 6 3.6911 1.4381 2.3666 25 6 2.1604 1.4364 2.3953 26 8 1.6626 2.0814 1.2213 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 3.8574 0.9187 -1.0345 33 1 3.9266 2.4722 -0.1660 34 1 6.0357 0.3331 0.0918 35 1 6.0192 1.8427 1.0350 36 1 4.6277 -1.2046 2.3117 37 1 6.0235 -1.8582 1.4217 38 1 5.8246 -2.9288 3.6438 39 1 5.9083 -1.3315 4.4265 40 1 8.0767 -2.6000 2.6896 41 1 9.3667 -2.5364 4.8464 42 1 7.8824 -2.0124 5.6776 43 1 9.1552 -4.7578 7.7762 44 1 9.3995 -0.6051 3.2861 45 1 8.0262 0.0451 4.2145 46 1 8.0387 -0.5483 1.2200 47 1 8.1229 1.0672 1.9621 48 1 4.0544 2.4657 2.3761 49 1 4.0724 0.9089 3.2398 50 1 1.8128 1.9714 3.2791 51 1 1.7985 0.4087 2.4267 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567906310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:21:25 Heat of formation + Delta-G solvation = -95.631828 kcal Electronic energy + Delta-G solvation = -25234.268607 eV Core-core repulsion = 21938.175876 eV Total energy + Delta-G solvation = -3296.092730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 295.225 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.14018 -39.85056 -36.75489 -35.00130 -34.32828 -33.52397 -31.70483 -31.07060 -29.99936 -27.59029 -25.61530 -24.53609 -24.19926 -23.93580 -22.69162 -21.68592 -20.44651 -19.87836 -18.43089 -17.44270 -17.07319 -16.78530 -16.46958 -16.15502 -15.71087 -15.53530 -15.16609 -14.93113 -14.70252 -14.64080 -14.44539 -13.95364 -13.83893 -13.67090 -13.36970 -13.28026 -13.04669 -12.86234 -12.66360 -12.59811 -12.54683 -12.37418 -12.13033 -12.05574 -11.98054 -11.85083 -11.71159 -11.54987 -11.41558 -11.22802 -10.85660 -10.80288 -10.68721 -10.52101 -10.21756 -9.15703 -8.17592 -6.27175 1.38927 1.39269 1.52118 2.41375 2.95667 3.03029 3.15651 3.72211 3.80929 3.88831 4.03570 4.08228 4.10582 4.10907 4.17455 4.29277 4.37565 4.44338 4.46253 4.50654 4.56476 4.65013 4.67757 4.73538 4.78681 4.81885 4.87061 4.88950 4.91121 4.96665 4.99812 5.05882 5.11258 5.14088 5.17025 5.18459 5.29954 5.38350 5.39335 5.41639 5.44167 5.46634 5.52293 5.58345 5.81601 5.89729 6.20880 6.26388 6.31921 6.38524 6.89307 7.41278 8.94586 Molecular weight = 295.23amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.003276 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.960362 B = 8545.154903 C = 9395.910845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.158 4.158 3 C 0.089 3.911 4 H 0.110 0.890 5 C -0.138 4.138 6 C -0.087 4.087 7 H 0.073 0.927 8 C 0.065 3.935 9 N -0.541 5.541 10 C 0.064 3.936 11 C -0.093 4.093 12 C -0.074 4.074 13 C 0.034 3.966 14 C -0.528 4.528 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.936 5.936 18 Si 0.960 3.040 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.279 1.279 22 C -0.106 4.106 23 C 0.067 3.933 24 C -0.135 4.135 25 C 0.055 3.945 26 O -0.391 6.391 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.026 0.974 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.045 0.955 41 H -0.016 1.016 42 H -0.013 1.013 43 H 0.262 0.738 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.031 0.969 47 H 0.086 0.914 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.094 0.906 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.932 12.367 -17.038 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.195 4.195 3 C 0.032 3.968 4 H 0.127 0.873 5 C -0.176 4.176 6 C -0.105 4.105 7 H 0.091 0.909 8 C -0.062 4.062 9 N -0.266 5.266 10 C -0.064 4.064 11 C -0.131 4.131 12 C -0.093 4.093 13 C -0.003 4.003 14 C -0.566 4.566 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.577 5.577 18 Si 0.785 3.215 19 H -0.185 1.185 20 H -0.206 1.206 21 H -0.205 1.205 22 C -0.144 4.144 23 C -0.060 4.060 24 C -0.173 4.173 25 C -0.021 4.021 26 O -0.311 6.311 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.003 0.997 42 H 0.006 0.994 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.049 0.951 47 H 0.104 0.896 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.113 0.887 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.091 12.757 -16.459 25.144 hybrid contribution 0.682 -1.739 0.099 1.871 sum -13.409 11.018 -16.360 23.851 Atomic orbital electron populations 1.21686 0.95077 1.01636 1.02025 1.22190 0.97086 0.97182 1.03053 1.22316 0.93779 0.93461 0.87279 0.87262 1.22179 0.95572 1.01643 0.98198 1.21293 0.93968 0.99970 0.95294 0.90860 1.22153 0.94293 0.98992 0.90805 1.61931 1.05533 1.16898 1.42207 1.22106 0.99793 0.88317 0.96161 1.21412 0.95076 0.99389 0.97245 1.21076 0.95704 0.95121 0.97385 1.19007 0.94002 0.94605 0.92686 1.21677 1.32376 0.97832 1.04712 0.92195 1.25963 0.95363 1.03080 0.95599 1.70117 1.39186 1.38383 1.09986 0.85466 0.78149 0.79505 0.78353 1.18503 1.20568 1.20507 1.21586 0.99217 0.95627 0.97985 1.21993 0.87370 1.00655 0.96022 1.22029 0.95592 1.01167 0.98466 1.22645 0.93425 0.97976 0.88056 1.87943 1.75002 1.53782 1.14346 0.92058 0.93287 0.92530 0.91960 0.90084 0.89807 0.90971 0.94671 0.90264 0.89562 0.95527 0.92746 0.93291 0.93621 0.99747 0.99443 0.92962 0.92217 0.92707 0.95093 0.89555 0.91813 0.91130 0.88742 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.81 71.98 0.71 -1.37 16 2 C -0.16 -2.30 4.74 30.59 0.14 -2.15 16 3 C 0.09 1.38 3.29 30.62 0.10 1.48 16 4 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 5 C -0.14 -2.03 4.93 30.69 0.15 -1.88 16 6 C -0.09 -1.57 1.47 -10.67 -0.02 -1.59 16 7 H 0.07 1.41 4.68 -2.39 -0.01 1.40 16 8 C 0.06 1.31 4.56 86.30 0.39 1.70 16 9 N -0.54 -14.13 4.15 -896.34 -3.72 -17.85 16 10 C 0.06 1.82 4.99 86.33 0.43 2.25 16 11 C -0.09 -3.49 5.15 30.65 0.16 -3.33 16 12 C -0.07 -3.08 2.20 -10.72 -0.02 -3.10 16 13 C 0.03 1.82 4.45 29.85 0.13 1.96 16 14 C -0.53 -30.12 8.45 25.60 0.22 -29.90 16 15 H 0.06 3.28 7.08 -2.91 -0.02 3.26 16 16 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 17 N -0.94 -57.88 13.29 21.45 0.28 -57.59 16 18 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 22 C -0.11 -3.69 5.38 30.65 0.16 -3.52 16 23 C 0.07 1.84 5.46 86.33 0.47 2.31 16 24 C -0.13 -2.69 5.17 30.69 0.16 -2.54 16 25 C 0.06 1.05 6.52 72.01 0.47 1.52 16 26 O -0.39 -7.82 10.13 -148.98 -1.51 -9.33 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.80 7.82 -2.39 -0.02 0.78 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 1.04 4.98 -2.39 -0.01 1.03 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 2.20 5.66 -2.38 -0.01 2.18 16 37 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.05 2.18 7.05 -2.39 -0.02 2.17 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 41 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 42 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 43 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.09 2.02 8.12 -2.39 -0.02 2.00 16 48 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.07 1.66 7.62 -2.39 -0.02 1.64 16 50 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 51 H 0.05 0.98 6.23 -2.39 -0.01 0.97 16 Total: -1.00 -64.29 374.56 2.06 -62.24 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.86 Total: 13.69 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 4.12 Total: -37.89 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -3.44 Total: -75.44 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -1.51 Total: -9.33 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -64.29 2.06 -62.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567906310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.394 kcal (2) G-P(sol) polarization free energy of solvation -64.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds